data_1MA
# 
_chem_comp.id                                    1MA 
_chem_comp.name                                  "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H16 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2018-04-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         MAD 
_chem_comp.formula_weight                        361.248 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     1MA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1EVV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1MA P      P      P 0 1 N N N 46.529 22.817 33.964 -5.074 -0.976 0.070  P      1MA 1  
1MA OP1    O1P    O 0 1 N N N 46.409 23.293 35.345 -6.104 0.010  -0.327 OP1    1MA 2  
1MA OP2    O2P    O 0 1 N N N 45.367 22.870 33.064 -5.612 -1.843 1.315  OP2    1MA 3  
1MA OP3    O3P    O 0 1 N Y N 47.720 23.514 33.183 -4.761 -1.954 -1.170 OP3    1MA 4  
1MA "O5'"  "O5'"  O 0 1 N N N 46.992 21.295 34.148 -3.728 -0.203 0.497  "O5'"  1MA 5  
1MA "C5'"  "C5'"  C 0 1 N N N 47.255 20.477 33.035 -3.063 0.732  -0.356 "C5'"  1MA 6  
1MA "C4'"  "C4'"  C 0 1 N N R 46.967 19.012 33.364 -1.824 1.279  0.354  "C4'"  1MA 7  
1MA "O4'"  "O4'"  O 0 1 N N N 47.644 18.625 34.598 -0.860 0.228  0.534  "O4'"  1MA 8  
1MA "C3'"  "C3'"  C 0 1 N N S 45.501 18.599 33.578 -1.160 2.366  -0.513 "C3'"  1MA 9  
1MA "O3'"  "O3'"  O 0 1 N N N 45.397 17.196 33.301 -1.127 3.612  0.186  "O3'"  1MA 10 
1MA "C2'"  "C2'"  C 0 1 N N R 45.394 18.795 35.079 0.276  1.839  -0.749 "C2'"  1MA 11 
1MA "O2'"  "O2'"  O 0 1 N N N 44.335 18.133 35.717 1.231  2.898  -0.651 "O2'"  1MA 12 
1MA "C1'"  "C1'"  C 0 1 N N R 46.700 18.145 35.524 0.447  0.830  0.415  "C1'"  1MA 13 
1MA N9     N9     N 0 1 Y N N 47.110 18.482 36.893 1.452  -0.181 0.078  N9     1MA 14 
1MA C8     C8     C 0 1 Y N N 46.675 19.534 37.642 1.219  -1.380 -0.536 C8     1MA 15 
1MA N7     N7     N 0 1 Y N N 47.139 19.537 38.863 2.345  -2.030 -0.678 N7     1MA 16 
1MA C5     C5     C 0 1 Y N N 47.966 18.423 38.919 3.339  -1.297 -0.172 C5     1MA 17 
1MA C6     C6     C 0 1 N N N 48.755 17.971 40.070 4.792  -1.508 -0.045 C6     1MA 18 
1MA N6     N6     N 0 1 N N N 48.694 18.686 41.361 5.367  -2.684 -0.141 N6     1MA 19 
1MA N1     N1     N 0 1 N N N 49.517 16.774 39.781 5.491  -0.321 0.189  N1     1MA 20 
1MA CM1    CM1    C 0 1 N N N 50.300 16.311 40.944 6.874  -0.169 -0.271 CM1    1MA 21 
1MA C2     C2     C 0 1 N N N 49.413 16.251 38.532 4.866  0.693  0.852  C2     1MA 22 
1MA N3     N3     N 0 1 N N N 48.678 16.652 37.448 3.565  0.833  0.892  N3     1MA 23 
1MA C4     C4     C 0 1 Y N N 47.963 17.774 37.712 2.785  -0.097 0.312  C4     1MA 24 
1MA HOP2   HOP2   H 0 0 N N N 44.623 23.236 33.528 -6.423 -2.336 1.130  HOP2   1MA 25 
1MA HOP3   HOP3   H 0 0 N N N 48.158 24.131 33.757 -4.093 -2.627 -0.981 HOP3   1MA 26 
1MA "H5'"  "H5'1" H 0 1 N N N 46.617 20.791 32.196 -2.764 0.233  -1.278 "H5'"  1MA 27 
1MA "H5''" "H5'2" H 0 0 N N N 48.312 20.583 32.751 -3.740 1.554  -0.591 "H5''" 1MA 28 
1MA "H4'"  "H4'"  H 0 1 N N N 47.366 18.401 32.541 -2.104 1.694  1.322  "H4'"  1MA 29 
1MA "H3'"  "H3'"  H 0 1 N N N 44.797 19.227 33.012 -1.689 2.475  -1.460 "H3'"  1MA 30 
1MA "HO3'" "HO3'" H 0 0 N Y N 44.499 16.914 33.426 -0.719 4.333  -0.313 "HO3'" 1MA 31 
1MA "H2'"  "H2'"  H 0 1 N N N 45.408 19.868 35.321 0.353  1.337  -1.714 "H2'"  1MA 32 
1MA "HO2'" "HO2'" H 0 0 N N N 44.359 18.321 36.648 1.108  3.600  -1.304 "HO2'" 1MA 33 
1MA "H1'"  "H1'"  H 0 1 N N N 46.598 17.054 35.432 0.716  1.348  1.335  "H1'"  1MA 34 
1MA H8     H8     H 0 1 N N N 46.009 20.294 37.262 0.251  -1.737 -0.855 H8     1MA 35 
1MA HN61   HN61   H 0 0 N N N 49.258 18.246 42.060 6.329  -2.762 -0.048 HN61   1MA 36 
1MA HM11   HM11   H 0 0 N N N 50.858 15.403 40.673 6.878  0.245  -1.279 HM11   1MA 37 
1MA HM12   HM12   H 0 0 N N N 51.006 17.098 41.247 7.408  0.504  0.400  HM12   1MA 38 
1MA HM13   HM13   H 0 0 N N N 49.619 16.087 41.779 7.365  -1.142 -0.276 HM13   1MA 39 
1MA H2     H2     H 0 1 N N N 50.012 15.368 38.365 5.475  1.418  1.371  H2     1MA 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1MA P     OP1    DOUB N N 1  
1MA P     OP2    SING N N 2  
1MA P     OP3    SING N N 3  
1MA P     "O5'"  SING N N 4  
1MA OP2   HOP2   SING N N 5  
1MA OP3   HOP3   SING N N 6  
1MA "O5'" "C5'"  SING N N 7  
1MA "C5'" "C4'"  SING N N 8  
1MA "C5'" "H5'"  SING N N 9  
1MA "C5'" "H5''" SING N N 10 
1MA "C4'" "O4'"  SING N N 11 
1MA "C4'" "C3'"  SING N N 12 
1MA "C4'" "H4'"  SING N N 13 
1MA "O4'" "C1'"  SING N N 14 
1MA "C3'" "O3'"  SING N N 15 
1MA "C3'" "C2'"  SING N N 16 
1MA "C3'" "H3'"  SING N N 17 
1MA "O3'" "HO3'" SING N N 18 
1MA "C2'" "O2'"  SING N N 19 
1MA "C2'" "C1'"  SING N N 20 
1MA "C2'" "H2'"  SING N N 21 
1MA "O2'" "HO2'" SING N N 22 
1MA "C1'" N9     SING N N 23 
1MA "C1'" "H1'"  SING N N 24 
1MA N9    C8     SING Y N 25 
1MA N9    C4     SING Y N 26 
1MA C8    N7     DOUB Y N 27 
1MA C8    H8     SING N N 28 
1MA N7    C5     SING Y N 29 
1MA C5    C6     SING N N 30 
1MA C5    C4     DOUB Y N 31 
1MA C6    N6     DOUB N N 32 
1MA C6    N1     SING N N 33 
1MA N6    HN61   SING N N 34 
1MA N1    CM1    SING N N 35 
1MA N1    C2     SING N N 36 
1MA CM1   HM11   SING N N 37 
1MA CM1   HM12   SING N N 38 
1MA CM1   HM13   SING N N 39 
1MA C2    N3     DOUB N N 40 
1MA C2    H2     SING N N 41 
1MA N3    C4     SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1MA SMILES           ACDLabs              12.01 "P(=O)(O)(O)OCC1OC(C(C1O)O)n2cnc3\C(=N)N(C)C=Nc23"                                                                                                                     
1MA InChI            InChI                1.03  "InChI=1S/C11H16N5O7P/c1-15-3-14-10-6(9(15)12)13-4-16(10)11-8(18)7(17)5(23-11)2-22-24(19,20)21/h3-5,7-8,11-12,17-18H,2H2,1H3,(H2,19,20,21)/b12-9-/t5-,7-,8-,11-/m1/s1" 
1MA InChIKey         InChI                1.03  BKBYKEWNXKDACS-JOLDIKRXSA-N                                                                                                                                            
1MA SMILES_CANONICAL CACTVS               3.385 "CN1C=Nc2n(cnc2C1=N)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O"                                                                                                      
1MA SMILES           CACTVS               3.385 "CN1C=Nc2n(cnc2C1=N)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O"                                                                                                            
1MA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C\1/c2c(n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N=CN1C"                                                                                              
1MA SMILES           "OpenEye OEToolkits" 1.7.6 "CN1C=Nc2c(ncn2C3C(C(C(O3)COP(=O)(O)O)O)O)C1=N"                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1MA "SYSTEMATIC NAME" ACDLabs              12.01 
;1-methyladenosine 5'-(dihydrogen phosphate)
;
1MA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(6-azanylidene-1-methyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1MA "Create component"   1999-07-08 RCSB 
1MA "Modify descriptor"  2010-09-29 RCSB 
1MA "Other modification" 2012-06-14 RCSB 
1MA "Other modification" 2015-08-19 RCSB 
1MA "Other modification" 2018-04-17 RCSB 
# 
