data_3AA
#

_chem_comp.id                                   3AA
_chem_comp.name                                 "3-AMINOPYRIDINE-ADENINE DINUCLEOTIDE PHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H29 N7 O16 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;ADENOSINE 5'-(TRIHYDROGEN DIPHOSPHATE) 2'-(DIHYDROGEN PHOSPHATE)ESTER WITH 3-(AMINO)-1-BETA-D-RIBOFURANOSYLPYRIDINIUM
INNER SALT
;

_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2000-06-27
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       716.403
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3AA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1F6M
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3AA  PA      AP    P  0  1  N  N  R  15.826   -5.805  83.619   -0.327   2.921  -0.371  PA      3AA   1  
3AA  O1A     AO1   O  0  1  N  N  N  15.981   -4.476  84.278    0.141   3.284  -1.868  O1A     3AA   2  
3AA  O2A     AO2   O  0  1  N  N  N  15.168   -5.887  82.289   -0.456   4.166   0.421  O2A     3AA   3  
3AA  O5B     AO5*  O  0  1  N  N  N  15.002   -6.690  84.568    0.767   1.960   0.315  O5B     3AA   4  
3AA  C5B     AC5*  C  0  1  N  N  N  15.403   -6.967  85.879    2.103   2.379   0.600  C5B     3AA   5  
3AA  C4B     AC4*  C  0  1  N  N  R  14.448   -7.950  86.536    2.872   1.226   1.248  C4B     3AA   6  
3AA  O4B     AO4*  O  0  1  N  N  N  15.053   -8.305  87.770    3.039   0.157   0.301  O4B     3AA   7  
3AA  C1B     AC1*  C  0  1  N  N  R  14.159   -7.950  88.840    4.319  -0.453   0.576  C1B     3AA   8  
3AA  N9A     AN9   N  0  1  Y  N  N  14.946   -7.443  89.980    4.805  -1.181  -0.599  N9A     3AA   9  
3AA  C4A     AC4   C  0  1  Y  N  N  15.016   -8.026  91.205    5.704  -2.218  -0.596  C4A     3AA  10  
3AA  N3A     AN3   N  0  1  Y  N  N  14.402   -9.159  91.589    6.384  -2.868   0.343  N3A     3AA  11  
3AA  C2A     AC2   C  0  1  Y  N  N  14.709   -9.418  92.846    7.196  -3.853   0.023  C2A     3AA  12  
3AA  N1A     AN1   N  0  1  Y  N  N  15.478   -8.738  93.688    7.380  -4.242  -1.226  N1A     3AA  13  
3AA  C6A     AC6   C  0  1  Y  N  N  16.072   -7.612  93.271    6.744  -3.651  -2.232  C6A     3AA  14  
3AA  N6A     AN6   N  0  1  N  N  N  16.772   -6.850  94.121    6.943  -4.067  -3.537  N6A     3AA  15  
3AA  C5A     AC5   C  0  1  Y  N  N  15.833   -7.244  91.952    5.865  -2.595  -1.940  C5A     3AA  16  
3AA  N7A     AN7   N  0  1  Y  N  N  16.290   -6.191  91.213    5.070  -1.784  -2.679  N7A     3AA  17  
3AA  C8A     AC8   C  0  1  Y  N  N  15.741   -6.350  90.065    4.444  -0.957  -1.894  C8A     3AA  18  
3AA  C2B     AC2*  C  0  1  N  N  R  13.215   -6.941  88.289    5.237   0.757   0.886  C2B     3AA  19  
3AA  O2B     AO2*  O  0  1  N  N  N  12.005   -6.860  89.017    6.337   0.364   1.709  O2B     3AA  20  
3AA  P2B     AP2*  P  0  1  N  N  N  10.805   -5.809  88.673    7.873   0.525   1.254  P2B     3AA  21  
3AA  O1X     AOP1  O  0  1  N  N  N   9.934   -5.730  89.910    8.077  -0.157  -0.044  O1X     3AA  22  
3AA  O2X     AOP2  O  0  1  N  N  N  11.519   -4.497  88.392    8.227   2.088   1.100  O2X     3AA  23  
3AA  O3X     AOP3  O  0  1  N  N  N  10.058   -6.375  87.463    8.833  -0.136   2.364  O3X     3AA  24  
3AA  C3B     AC3*  C  0  1  N  N  R  13.057   -7.399  86.827    4.280   1.700   1.656  C3B     3AA  25  
3AA  O3B     AO3*  O  0  1  N  N  N  11.946   -8.305  86.622    4.466   1.559   3.066  O3B     3AA  26  
3AA  O3      O3    O  0  1  N  N  N  17.248   -6.509  83.479   -1.749   2.168  -0.421  O3      3AA  27  
3AA  PN      NP    P  0  1  N  N  R  17.677   -7.503  82.298   -3.263   2.651  -0.680  PN      3AA  28  
3AA  O1N     NO1   O  0  1  N  N  N  16.580   -8.440  82.046   -3.295   3.572  -1.837  O1N     3AA  29  
3AA  O2N     NO2   O  0  1  N  N  N  19.035   -8.002  82.578   -3.814   3.412   0.627  O2N     3AA  30  
3AA  O5D     NO5*  O  0  1  N  N  N  17.729   -6.602  81.030   -4.190   1.371  -0.986  O5D     3AA  31  
3AA  C5D     NC5*  C  0  1  N  N  N  18.362   -5.311  80.825   -5.565   1.478  -1.360  C5D     3AA  32  
3AA  C4D     NC4*  C  0  1  N  N  R  18.139   -4.650  79.377   -6.144   0.078  -1.576  C4D     3AA  33  
3AA  O4D     NO4*  O  0  1  N  N  N  18.690   -5.422  78.295   -6.179  -0.635  -0.328  O4D     3AA  34  
3AA  C3D     NC3*  C  0  1  N  N  S  16.667   -4.421  78.989   -7.596   0.185  -2.083  C3D     3AA  35  
3AA  O3D     NO3*  O  0  1  N  N  N  16.458   -3.139  78.326   -7.725  -0.435  -3.364  O3D     3AA  36  
3AA  C2D     NC2*  C  0  1  N  N  R  16.317   -5.658  78.207   -8.425  -0.582  -1.024  C2D     3AA  37  
3AA  O2D     NO2*  O  0  1  N  N  N  15.169   -5.468  77.409   -9.437  -1.376  -1.645  O2D     3AA  38  
3AA  C1D     NC1*  C  0  1  N  N  R  17.630   -5.936  77.488   -7.351  -1.478  -0.357  C1D     3AA  39  
3AA  N1N     NN1   N  1  1  Y  N  N  17.853   -7.367  77.151   -7.756  -1.844   1.003  N1N     3AA  40  
3AA  C2N     NC2   C  0  1  Y  N  N  17.322   -7.814  75.922   -8.201  -3.063   1.232  C2N     3AA  41  
3AA  C4N     NC4   C  0  1  Y  N  N  17.811  -10.165  76.626   -8.510  -2.519   3.547  C4N     3AA  42  
3AA  C5N     NC5   C  0  1  Y  N  N  18.326   -9.668  77.843   -8.031  -1.251   3.260  C5N     3AA  43  
3AA  C6N     NC6   C  0  1  Y  N  N  18.360   -8.302  78.120   -7.660  -0.946   1.964  C6N     3AA  44  
3AA  C3N     NC3   C  0  1  Y  N  N  17.311   -9.222  75.664   -8.594  -3.445   2.509  C3N     3AA  45  
3AA  N7N     NN7   N  0  1  N  N  N  16.847   -9.656  74.530   -9.066  -4.738   2.749  N7N     3AA  46  
3AA  HA1     HA1   H  0  1  N  N  N  16.401   -4.423  85.128    0.246   2.515  -2.445  HA1     3AA  47  
3AA  "H5'1"  1H5*  H  0  0  N  N  N  16.458   -7.324  85.921    2.597   2.671  -0.327  "H5'1"  3AA  48  
3AA  "H5'2"  2H5*  H  0  0  N  N  N  15.517   -6.036  86.481    2.079   3.229   1.282  "H5'2"  3AA  49  
3AA  "H'4"   4H*   H  0  1  N  N  N  14.288   -8.799  85.832    2.332   0.866   2.123  "H'4"   3AA  50  
3AA  "H'1"   1H*   H  0  1  N  N  N  13.575   -8.819  89.222    4.251  -1.117   1.437  "H'1"   3AA  51  
3AA  H2      H2    H  0  1  N  N  N  14.256  -10.338  93.252    7.734  -4.360   0.810  H2      3AA  52  
3AA  HN61    1HN6  H  0  0  N  N  N  17.224   -5.992  93.803    7.553  -4.797  -3.726  HN61    3AA  53  
3AA  HN62    2HN6  H  0  0  N  N  N  17.478   -7.436  94.565    6.473  -3.628  -4.263  HN62    3AA  54  
3AA  H8      H8    H  0  1  N  N  N  15.929   -5.632  89.248    3.743  -0.203  -2.220  H8      3AA  55  
3AA  "H'2"   2H*   H  0  1  N  N  N  13.584   -5.891  88.362    5.588   1.225  -0.033  "H'2"   3AA  56  
3AA  H0P2    H0P2  H  0  0  N  N  N  10.820   -3.885  88.191    8.116   2.598   1.914  H0P2    3AA  57  
3AA  H0P3    H0P3  H  0  0  N  N  N   9.359   -5.763  87.262    9.776  -0.076   2.155  H0P3    3AA  58  
3AA  "H'3"   3H*   H  0  1  N  N  N  12.768   -6.596  86.109    4.438   2.735   1.352  "H'3"   3AA  59  
3AA  "HA3'"  HA3*  H  0  0  N  N  N  11.079   -7.961  86.803    3.853   2.084   3.598  "HA3'"  3AA  60  
3AA  HN1     HN1   H  0  1  N  N  N  19.289   -8.591  81.877   -3.821   2.867   1.426  HN1     3AA  61  
3AA  "H15'"  H15*  H  0  0  N  N  N  18.042   -4.599  81.621   -6.118   1.982  -0.568  "H15'"  3AA  62  
3AA  "H25'"  H25*  H  0  0  N  N  N  19.452   -5.381  81.047   -5.647   2.052  -2.283  "H25'"  3AA  63  
3AA  "HC4'"  HC4*  H  0  0  N  N  N  18.668   -3.676  79.502   -5.536  -0.467  -2.298  "HC4'"  3AA  64  
3AA  "H3'"   H3*   H  0  1  N  N  N  15.972   -4.311  79.854   -7.907   1.228  -2.132  "H3'"   3AA  65  
3AA  "HO3'"  HO3*  H  0  0  N  N  N  15.549   -2.997  78.086   -8.619  -0.398  -3.731  "HO3'"  3AA  66  
3AA  "H2'"   H2*   H  0  1  N  N  N  15.994   -6.545  78.800   -8.863   0.106  -0.300  "H2'"   3AA  67  
3AA  "HO2'"  HO2*  H  0  0  N  N  N  14.948   -6.249  76.915  -10.083  -0.864  -2.152  "HO2'"  3AA  68  
3AA  "H1'"   H1*   H  0  1  N  N  N  17.593   -5.423  76.498   -7.168  -2.369  -0.957  "H1'"   3AA  69  
3AA  HC2     HC2   H  0  1  N  N  N  16.929   -7.088  75.189   -8.261  -3.772   0.420  HC2     3AA  70  
3AA  HC4     HC4   H  0  1  N  N  N  18.582  -10.806  76.139   -8.808  -2.785   4.550  HC4     3AA  71  
3AA  HC5     HC5   H  0  1  N  N  N  18.714  -10.368  78.601   -7.953  -0.508   4.040  HC5     3AA  72  
3AA  HC6     HC6   H  0  1  N  N  N  18.778   -7.968  79.084   -7.286   0.041   1.736  HC6     3AA  73  
3AA  HN71    1HN7  H  0  0  N  N  N  16.839  -10.659  74.346   -9.122  -5.376   2.021  HN71    3AA  74  
3AA  HN72    2HN7  H  0  0  N  N  N  17.345   -9.188  73.772   -9.339  -4.996   3.643  HN72    3AA  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3AA  PA   O1A     SING  N  N   1  
3AA  PA   O2A     DOUB  N  N   2  
3AA  PA   O5B     SING  N  N   3  
3AA  PA   O3      SING  N  N   4  
3AA  O1A  HA1     SING  N  N   5  
3AA  O5B  C5B     SING  N  N   6  
3AA  C5B  C4B     SING  N  N   7  
3AA  C5B  "H5'1"  SING  N  N   8  
3AA  C5B  "H5'2"  SING  N  N   9  
3AA  C4B  O4B     SING  N  N  10  
3AA  C4B  C3B     SING  N  N  11  
3AA  C4B  "H'4"   SING  N  N  12  
3AA  O4B  C1B     SING  N  N  13  
3AA  C1B  N9A     SING  N  N  14  
3AA  C1B  C2B     SING  N  N  15  
3AA  C1B  "H'1"   SING  N  N  16  
3AA  N9A  C4A     SING  Y  N  17  
3AA  N9A  C8A     SING  Y  N  18  
3AA  C4A  N3A     SING  Y  N  19  
3AA  C4A  C5A     DOUB  Y  N  20  
3AA  N3A  C2A     DOUB  Y  N  21  
3AA  C2A  N1A     SING  Y  N  22  
3AA  C2A  H2      SING  N  N  23  
3AA  N1A  C6A     DOUB  Y  N  24  
3AA  C6A  N6A     SING  N  N  25  
3AA  C6A  C5A     SING  Y  N  26  
3AA  N6A  HN61    SING  N  N  27  
3AA  N6A  HN62    SING  N  N  28  
3AA  C5A  N7A     SING  Y  N  29  
3AA  N7A  C8A     DOUB  Y  N  30  
3AA  C8A  H8      SING  N  N  31  
3AA  C2B  O2B     SING  N  N  32  
3AA  C2B  C3B     SING  N  N  33  
3AA  C2B  "H'2"   SING  N  N  34  
3AA  O2B  P2B     SING  N  N  35  
3AA  P2B  O1X     DOUB  N  N  36  
3AA  P2B  O2X     SING  N  N  37  
3AA  P2B  O3X     SING  N  N  38  
3AA  O2X  H0P2    SING  N  N  39  
3AA  O3X  H0P3    SING  N  N  40  
3AA  C3B  O3B     SING  N  N  41  
3AA  C3B  "H'3"   SING  N  N  42  
3AA  O3B  "HA3'"  SING  N  N  43  
3AA  O3   PN      SING  N  N  44  
3AA  PN   O1N     DOUB  N  N  45  
3AA  PN   O2N     SING  N  N  46  
3AA  PN   O5D     SING  N  N  47  
3AA  O2N  HN1     SING  N  N  48  
3AA  O5D  C5D     SING  N  N  49  
3AA  C5D  C4D     SING  N  N  50  
3AA  C5D  "H15'"  SING  N  N  51  
3AA  C5D  "H25'"  SING  N  N  52  
3AA  C4D  O4D     SING  N  N  53  
3AA  C4D  C3D     SING  N  N  54  
3AA  C4D  "HC4'"  SING  N  N  55  
3AA  O4D  C1D     SING  N  N  56  
3AA  C3D  O3D     SING  N  N  57  
3AA  C3D  C2D     SING  N  N  58  
3AA  C3D  "H3'"   SING  N  N  59  
3AA  O3D  "HO3'"  SING  N  N  60  
3AA  C2D  O2D     SING  N  N  61  
3AA  C2D  C1D     SING  N  N  62  
3AA  C2D  "H2'"   SING  N  N  63  
3AA  O2D  "HO2'"  SING  N  N  64  
3AA  C1D  N1N     SING  N  N  65  
3AA  C1D  "H1'"   SING  N  N  66  
3AA  N1N  C2N     DOUB  Y  N  67  
3AA  N1N  C6N     SING  Y  N  68  
3AA  C2N  C3N     SING  Y  N  69  
3AA  C2N  HC2     SING  N  N  70  
3AA  C4N  C5N     SING  Y  N  71  
3AA  C4N  C3N     DOUB  Y  N  72  
3AA  C4N  HC4     SING  N  N  73  
3AA  C5N  C6N     DOUB  Y  N  74  
3AA  C5N  HC5     SING  N  N  75  
3AA  C6N  HC6     SING  N  N  76  
3AA  C3N  N7N     SING  N  N  77  
3AA  N7N  HN71    SING  N  N  78  
3AA  N7N  HN72    SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3AA  InChI             InChI                 1.03   "InChI=1S/C20H28N7O16P3/c21-9-2-1-3-26(4-9)19-15(30)13(28)10(40-19)5-38-45(34,35)43-46(36,37)39-6-11-14(29)16(42-44(31,32)33)20(41-11)27-8-25-12-17(22)23-7-24-18(12)27/h1-4,7-8,10-11,13-16,19-20,28-30H,5-6,21H2,(H5-,22,23,24,31,32,33,34,35,36,37)/p+1/t10-,11-,13-,14-,15-,16-,19-,20-/m1/s1"  
3AA  InChIKey          InChI                 1.03   JRGQEVHOKKZPIX-HISDBWNOSA-O  
3AA  SMILES_CANONICAL  CACTVS                3.385  "Nc1ccc[n+](c1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O"  
3AA  SMILES            CACTVS                3.385  "Nc1ccc[n+](c1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O"  
3AA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)N"  
3AA  SMILES            "OpenEye OEToolkits"  1.7.5  "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          3AA
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.5.0
_pdbx_chem_comp_identifier.identifier       "[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methyl [[(2R,3S,4R,5R)-5-(3-aminopyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3AA  "Create component"    2000-06-27  EBI   
3AA  "Modify descriptor"   2011-06-04  RCSB  
3AA  "Modify descriptor"   2012-01-05  RCSB  
3AA  "Modify coordinates"  2012-01-05  RCSB  
3AA  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3AA
_pdbx_chem_comp_synonyms.name        "ADENOSINE 5'-(TRIHYDROGEN DIPHOSPHATE) 2'-(DIHYDROGEN PHOSPHATE)ESTER WITH 3-(AMINO)-1-BETA-D-RIBOFURANOSYLPYRIDINIUM INNER SALT"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
