data_9HA
# 
_chem_comp.id                                    9HA 
_chem_comp.name                                  "benzyl [(2S,3R)-1-({(2S)-1-[2-acetyl-2-(3-amino-3-oxopropyl)hydrazinyl]-3-cyclohexyl-1-oxopropan-2-yl}amino)-3-tert-butoxy-1-oxobutan-2-yl]carbamate (non-preferred name)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H47 N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        589.723 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9HA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7SH9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9HA N   N1  N 0 1 N N N N N N -9.172  -18.914 -17.424 3.280  -0.324 -0.196 N   9HA 1  
9HA C   C1  C 0 1 Y N N N N N -5.757  -23.534 -20.107 10.030 2.033  0.363  C   9HA 2  
9HA O   O1  O 0 1 N N N N N N -7.219  -20.116 -16.824 5.509  0.252  -0.576 O   9HA 3  
9HA C1  C2  C 0 1 Y N N N N N -5.564  -22.199 -20.479 9.823  0.668  0.445  C1  9HA 4  
9HA C10 C3  C 0 1 N N S N N N -9.973  -14.348 -17.369 -1.483 0.536  0.181  C10 9HA 5  
9HA C11 C4  C 0 1 N N N N N N -11.443 -14.104 -17.150 -2.770 -0.193 -0.107 C11 9HA 6  
9HA C12 C5  C 0 1 N N N N N N -13.828 -14.285 -14.848 -6.176 -0.092 -0.225 C12 9HA 7  
9HA C13 C6  C 0 1 N N N N N N -14.362 -15.416 -15.723 -6.133 -0.422 -1.718 C13 9HA 8  
9HA C14 C7  C 0 1 N N N N N N -15.218 -16.345 -14.860 -7.313 0.213  -2.407 C14 9HA 9  
9HA C15 C8  C 0 1 N N N N N N -13.648 -12.213 -16.112 -5.097 -1.990 0.858  C15 9HA 10 
9HA C16 C9  C 0 1 N N N N N N -12.806 -11.018 -16.548 -3.917 -2.625 1.546  C16 9HA 11 
9HA C18 C10 C 0 1 N N R N N N -11.305 -18.666 -18.501 1.837  -2.290 -0.383 C18 9HA 12 
9HA C2  C11 C 0 1 Y N N N N N -5.590  -21.196 -19.515 8.719  0.099  -0.162 C2  9HA 13 
9HA C20 C12 C 0 1 N N N N N N -11.615 -20.937 -19.337 0.985  -3.507 1.498  C20 9HA 14 
9HA C21 C13 C 0 1 N N N N N N -10.775 -21.600 -18.247 -0.463 -3.125 1.181  C21 9HA 15 
9HA C22 C14 C 0 1 N N N N N N -11.477 -21.747 -20.622 1.149  -3.672 3.010  C22 9HA 16 
9HA C23 C15 C 0 1 N N N N N N -13.095 -20.952 -18.948 1.329  -4.824 0.800  C23 9HA 17 
9HA C24 C16 C 0 1 N N N N N N -9.312  -13.209 -18.167 -1.601 1.985  -0.295 C24 9HA 18 
9HA C25 C17 C 0 1 N N N N N N -7.797  -13.387 -18.339 -2.647 2.716  0.549  C25 9HA 19 
9HA C26 C18 C 0 1 N N N N N N -7.116  -13.572 -16.987 -2.905 4.102  -0.047 C26 9HA 20 
9HA C27 C19 C 0 1 N N N N N N -5.600  -13.712 -17.150 -3.951 4.833  0.797  C27 9HA 21 
9HA C28 C20 C 0 1 N N N N N N -4.998  -12.484 -17.812 -3.437 4.981  2.231  C28 9HA 22 
9HA C29 C21 C 0 1 N N N N N N -5.668  -12.274 -19.165 -3.179 3.595  2.826  C29 9HA 23 
9HA C3  C22 C 0 1 Y N N N N N -5.815  -21.520 -18.170 7.822  0.894  -0.851 C3  9HA 24 
9HA C30 C23 C 0 1 N N N N N N -7.192  -12.154 -19.013 -2.133 2.864  1.982  C30 9HA 25 
9HA C4  C24 C 0 1 Y N N N N N -6.011  -22.850 -17.797 8.029  2.258  -0.933 C4  9HA 26 
9HA C5  C25 C 0 1 Y N N N N N -5.980  -23.854 -18.768 9.133  2.828  -0.326 C5  9HA 27 
9HA C6  C26 C 0 1 N N N N N N -5.855  -20.441 -17.108 6.618  0.273  -1.512 C6  9HA 28 
9HA C60 C27 C 0 1 N N N N N N -12.352 -17.627 -18.909 2.988  -3.070 -1.021 C60 9HA 29 
9HA C7  C28 C 0 1 N N N N N N -7.945  -19.271 -17.760 4.349  -0.274 -1.014 C7  9HA 30 
9HA C8  C29 C 0 1 N N S N N N -9.959  -18.007 -18.217 1.991  -0.801 -0.702 C8  9HA 31 
9HA C9  C30 C 0 1 N N N N N N -10.145 -16.730 -17.451 0.876  -0.029 -0.046 C9  9HA 32 
9HA N1  N2  N 0 1 N N N N N N -9.795  -15.605 -18.068 -0.381 -0.122 -0.524 N1  9HA 33 
9HA N2  N3  N 0 1 N N N N N N -11.806 -13.618 -15.961 -3.858 0.032  0.656  N2  9HA 34 
9HA N3  N4  N 0 1 N N N N N N -13.077 -13.341 -15.683 -5.028 -0.709 0.445  N3  9HA 35 
9HA N4  N5  N 0 1 N N N N N N -16.095 -17.122 -15.479 -7.483 0.056  -3.735 N4  9HA 36 
9HA O1  O2  O 0 1 N N N N N N -7.400  -18.923 -18.800 4.267  -0.704 -2.148 O1  9HA 37 
9HA O2  O3  O 0 1 N N N N N N -10.588 -16.754 -16.307 1.109  0.677  0.912  O2  9HA 38 
9HA O3  O4  O 0 1 N N N N N N -12.245 -14.355 -18.038 -2.827 -0.983 -1.026 O3  9HA 39 
9HA O4  O5  O 0 1 N N N N N N -15.109 -16.373 -13.652 -8.110 0.865  -1.766 O4  9HA 40 
9HA O5  O6  O 0 1 N N N N N N -14.864 -12.132 -16.134 -6.110 -2.632 0.675  O5  9HA 41 
9HA O6  O7  O 0 1 N N N N N N -11.103 -19.607 -19.555 1.861  -2.478 1.033  O6  9HA 42 
9HA H1  H1  H 0 1 N N N N N N -9.569  -19.289 -16.586 3.365  -0.048 0.730  H1  9HA 43 
9HA H2  H2  H 0 1 N N N N N N -5.733  -24.314 -20.854 10.890 2.478  0.841  H2  9HA 44 
9HA H3  H3  H 0 1 N N N N N N -5.395  -21.947 -21.515 10.524 0.047  0.982  H3  9HA 45 
9HA H4  H4  H 0 1 N N N N N N -9.480  -14.407 -16.387 -1.289 0.521  1.254  H4  9HA 46 
9HA H5  H5  H 0 1 N N N N N N -14.669 -13.763 -14.368 -6.137 0.989  -0.090 H5  9HA 47 
9HA H6  H6  H 0 1 N N N N N N -13.165 -14.700 -14.075 -7.099 -0.479 0.206  H6  9HA 48 
9HA H7  H7  H 0 1 N N N N N N -13.521 -15.980 -16.152 -5.209 -0.035 -2.149 H7  9HA 49 
9HA H8  H8  H 0 1 N N N N N N -14.974 -14.997 -16.535 -6.172 -1.503 -1.853 H8  9HA 50 
9HA H9  H9  H 0 1 N N N N N N -13.468 -10.190 -16.843 -3.106 -1.900 1.620  H9  9HA 51 
9HA H10 H10 H 0 1 N N N N N N -12.166 -10.696 -15.713 -4.209 -2.947 2.546  H10 9HA 52 
9HA H11 H11 H 0 1 N Y N N N N -12.176 -11.306 -17.403 -3.581 -3.488 0.971  H11 9HA 53 
9HA H12 H12 H 0 1 N N N N N N -11.650 -19.180 -17.592 0.889  -2.651 -0.781 H12 9HA 54 
9HA H13 H13 H 0 1 N N N N N N -5.437  -20.167 -19.803 8.557  -0.967 -0.099 H13 9HA 55 
9HA H14 H14 H 0 1 N N N N N N -10.865 -21.025 -17.313 -1.137 -3.857 1.624  H14 9HA 56 
9HA H15 H15 H 0 1 N N N N N N -11.133 -22.627 -18.082 -0.677 -2.138 1.592  H15 9HA 57 
9HA H16 H16 H 0 1 N N N N N N -9.721  -21.626 -18.561 -0.605 -3.107 0.100  H16 9HA 58 
9HA H17 H17 H 0 1 N N N N N N -11.867 -22.763 -20.459 2.180  -3.944 3.236  H17 9HA 59 
9HA H18 H18 H 0 1 N N N N N N -12.048 -21.259 -21.426 0.904  -2.733 3.507  H18 9HA 60 
9HA H19 H19 H 0 1 N N N N N N -10.416 -21.803 -20.908 0.480  -4.456 3.365  H19 9HA 61 
9HA H20 H20 H 0 1 N N N N N N -13.237 -20.376 -18.022 1.199  -4.710 -0.276 H20 9HA 62 
9HA H21 H21 H 0 1 N N N N N N -13.691 -20.501 -19.755 2.364  -5.089 1.015  H21 9HA 63 
9HA H22 H22 H 0 1 N N N N N N -13.421 -21.990 -18.788 0.669  -5.611 1.165  H22 9HA 64 
9HA H23 H23 H 0 1 N N N N N N -9.494  -12.261 -17.639 -0.637 2.482  -0.189 H23 9HA 65 
9HA H24 H24 H 0 1 N N N N N N -9.774  -13.168 -19.164 -1.904 2.000  -1.342 H24 9HA 66 
9HA H25 H25 H 0 1 N N N N N N -7.607  -14.271 -18.965 -3.575 2.144  0.552  H25 9HA 67 
9HA H26 H26 H 0 1 N N N N N N -7.330  -12.698 -16.354 -1.977 4.674  -0.050 H26 9HA 68 
9HA H27 H27 H 0 1 N N N N N N -7.511  -14.479 -16.506 -3.271 3.997  -1.068 H27 9HA 69 
9HA H28 H28 H 0 1 N N N N N N -5.387  -14.594 -17.771 -4.134 5.820  0.373  H28 9HA 70 
9HA H29 H29 H 0 1 N N N N N N -5.144  -13.843 -16.158 -4.878 4.261  0.801  H29 9HA 71 
9HA H30 H30 H 0 1 N N N N N N -3.918  -12.633 -17.954 -2.509 5.553  2.227  H30 9HA 72 
9HA H31 H31 H 0 1 N N N N N N -5.166  -11.602 -17.176 -4.182 5.502  2.832  H31 9HA 73 
9HA H32 H32 H 0 1 N N N N N N -5.438  -13.130 -19.817 -2.813 3.701  3.847  H32 9HA 74 
9HA H33 H33 H 0 1 N N N N N N -5.278  -11.351 -19.620 -4.107 3.023  2.830  H33 9HA 75 
9HA H34 H34 H 0 1 N N N N N N -7.420  -11.267 -18.403 -1.950 1.877  2.406  H34 9HA 76 
9HA H35 H35 H 0 1 N N N N N N -7.641  -12.038 -20.011 -1.205 3.436  1.978  H35 9HA 77 
9HA H36 H36 H 0 1 N N N N N N -6.186  -23.102 -16.762 7.328  2.880  -1.470 H36 9HA 78 
9HA H37 H37 H 0 1 N N N N N N -6.130  -24.884 -18.480 9.292  3.894  -0.386 H37 9HA 79 
9HA H38 H38 H 0 1 N N N N N N -5.365  -20.806 -16.193 6.856  -0.746 -1.817 H38 9HA 80 
9HA H39 H39 H 0 1 N N N N N N -5.331  -19.545 -17.473 6.343  0.860  -2.389 H39 9HA 81 
9HA H40 H40 H 0 1 N N N N N N -12.497 -16.910 -18.088 3.928  -2.777 -0.555 H40 9HA 82 
9HA H41 H41 H 0 1 N N N N N N -12.007 -17.092 -19.806 2.828  -4.138 -0.876 H41 9HA 83 
9HA H42 H42 H 0 1 N N N N N N -13.305 -18.132 -19.126 3.028  -2.851 -2.088 H42 9HA 84 
9HA H43 H43 H 0 1 N N N N N N -9.453  -17.793 -19.170 1.948  -0.655 -1.782 H43 9HA 85 
9HA H44 H44 H 0 1 N N N N N N -9.417  -15.626 -18.994 -0.555 -0.625 -1.335 H44 9HA 86 
9HA H45 H45 H 0 1 N N N N N N -11.107 -13.459 -15.264 -3.831 0.708  1.351  H45 9HA 87 
9HA H46 H46 H 0 1 N N N N N N -16.676 -17.740 -14.950 -6.846 -0.466 -4.247 H46 9HA 88 
9HA H47 H47 H 0 1 N N N N N N -16.176 -17.090 -16.475 -8.243 0.465  -4.178 H47 9HA 89 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9HA C22 C20 SING N N 1  
9HA C1  C   DOUB Y N 2  
9HA C1  C2  SING Y N 3  
9HA C   C5  SING Y N 4  
9HA O6  C20 SING N N 5  
9HA O6  C18 SING N N 6  
9HA C2  C3  DOUB Y N 7  
9HA C20 C23 SING N N 8  
9HA C20 C21 SING N N 9  
9HA C29 C30 SING N N 10 
9HA C29 C28 SING N N 11 
9HA C30 C25 SING N N 12 
9HA C60 C18 SING N N 13 
9HA O1  C7  DOUB N N 14 
9HA C5  C4  DOUB Y N 15 
9HA C18 C8  SING N N 16 
9HA C25 C24 SING N N 17 
9HA C25 C26 SING N N 18 
9HA C8  C9  SING N N 19 
9HA C8  N   SING N N 20 
9HA C3  C4  SING Y N 21 
9HA C3  C6  SING N N 22 
9HA C24 C10 SING N N 23 
9HA N1  C9  SING N N 24 
9HA N1  C10 SING N N 25 
9HA O3  C11 DOUB N N 26 
9HA C28 C27 SING N N 27 
9HA C7  N   SING N N 28 
9HA C7  O   SING N N 29 
9HA C9  O2  DOUB N N 30 
9HA C10 C11 SING N N 31 
9HA C27 C26 SING N N 32 
9HA C11 N2  SING N N 33 
9HA C6  O   SING N N 34 
9HA C16 C15 SING N N 35 
9HA O5  C15 DOUB N N 36 
9HA C15 N3  SING N N 37 
9HA N2  N3  SING N N 38 
9HA C13 C14 SING N N 39 
9HA C13 C12 SING N N 40 
9HA N3  C12 SING N N 41 
9HA N4  C14 SING N N 42 
9HA C14 O4  DOUB N N 43 
9HA N   H1  SING N N 44 
9HA C   H2  SING N N 45 
9HA C1  H3  SING N N 46 
9HA C10 H4  SING N N 47 
9HA C12 H5  SING N N 48 
9HA C12 H6  SING N N 49 
9HA C13 H7  SING N N 50 
9HA C13 H8  SING N N 51 
9HA C16 H9  SING N N 52 
9HA C16 H10 SING N N 53 
9HA C16 H11 SING N N 54 
9HA C18 H12 SING N N 55 
9HA C2  H13 SING N N 56 
9HA C21 H14 SING N N 57 
9HA C21 H15 SING N N 58 
9HA C21 H16 SING N N 59 
9HA C22 H17 SING N N 60 
9HA C22 H18 SING N N 61 
9HA C22 H19 SING N N 62 
9HA C23 H20 SING N N 63 
9HA C23 H21 SING N N 64 
9HA C23 H22 SING N N 65 
9HA C24 H23 SING N N 66 
9HA C24 H24 SING N N 67 
9HA C25 H25 SING N N 68 
9HA C26 H26 SING N N 69 
9HA C26 H27 SING N N 70 
9HA C27 H28 SING N N 71 
9HA C27 H29 SING N N 72 
9HA C28 H30 SING N N 73 
9HA C28 H31 SING N N 74 
9HA C29 H32 SING N N 75 
9HA C29 H33 SING N N 76 
9HA C30 H34 SING N N 77 
9HA C30 H35 SING N N 78 
9HA C4  H36 SING N N 79 
9HA C5  H37 SING N N 80 
9HA C6  H38 SING N N 81 
9HA C6  H39 SING N N 82 
9HA C60 H40 SING N N 83 
9HA C60 H41 SING N N 84 
9HA C60 H42 SING N N 85 
9HA C8  H43 SING N N 86 
9HA N1  H44 SING N N 87 
9HA N2  H45 SING N N 88 
9HA N4  H46 SING N N 89 
9HA N4  H47 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9HA SMILES           ACDLabs              12.01 "CC(=O)N(CCC(N)=O)NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)C(C)OC(C)(C)C)CC1CCCCC1"                                                                                                                                                                                      
9HA InChI            InChI                1.03  "InChI=1S/C30H47N5O7/c1-20(42-30(3,4)5)26(33-29(40)41-19-23-14-10-7-11-15-23)28(39)32-24(18-22-12-8-6-9-13-22)27(38)34-35(21(2)36)17-16-25(31)37/h7,10-11,14-15,20,22,24,26H,6,8-9,12-13,16-19H2,1-5H3,(H2,31,37)(H,32,39)(H,33,40)(H,34,38)/t20-,24+,26+/m1/s1" 
9HA InChIKey         InChI                1.03  SHNDMVPNEQWUDZ-PSUQPPDWSA-N                                                                                                                                                                                                                                      
9HA SMILES_CANONICAL CACTVS               3.385 "C[C@@H](OC(C)(C)C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](CC2CCCCC2)C(=O)NN(CCC(N)=O)C(C)=O"                                                                                                                                                                        
9HA SMILES           CACTVS               3.385 "C[CH](OC(C)(C)C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CC2CCCCC2)C(=O)NN(CCC(N)=O)C(C)=O"                                                                                                                                                                             
9HA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C(=O)N[C@@H](CC1CCCCC1)C(=O)NN(CCC(=O)N)C(=O)C)NC(=O)OCc2ccccc2)OC(C)(C)C"                                                                                                                                                                        
9HA SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)NC(CC1CCCCC1)C(=O)NN(CCC(=O)N)C(=O)C)NC(=O)OCc2ccccc2)OC(C)(C)C"                                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9HA "SYSTEMATIC NAME" ACDLabs              12.01 "benzyl [(2S,3R)-1-({(2S)-1-[2-acetyl-2-(3-amino-3-oxopropyl)hydrazinyl]-3-cyclohexyl-1-oxopropan-2-yl}amino)-3-tert-butoxy-1-oxobutan-2-yl]carbamate (non-preferred name)"                                                      
9HA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-1-[2-(3-azanyl-3-oxidanylidene-propyl)-2-ethanoyl-hydrazinyl]-3-cyclohexyl-1-oxidanylidene-propan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9HA "Create component" 2021-10-13 RCSB 
9HA "Initial release"  2023-04-12 RCSB 
9HA "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            9HA 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C16 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
