data_F3A
# 
_chem_comp.id                                    F3A 
_chem_comp.name                                  "2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H16 F2 N5 O11 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-09-07 
_chem_comp.pdbx_modified_date                    2012-03-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        525.190 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F3A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3TFR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F3A N1     N1     N 0 1 Y N N 9.637  8.393  8.177  -8.419 -1.965 -0.848 N1     F3A 1  
F3A C2     C2     C 0 1 Y N N 8.382  8.489  7.585  -7.986 -1.027 -1.671 C2     F3A 2  
F3A N3     N3     N 0 1 Y N N 7.223  8.180  8.314  -6.854 -0.384 -1.477 N3     F3A 3  
F3A C4     C4     C 0 1 Y N N 7.357  7.792  9.607  -6.089 -0.660 -0.426 C4     F3A 4  
F3A C5     C5     C 0 1 Y N N 8.623  7.693  10.208 -6.506 -1.650 0.480  C5     F3A 5  
F3A C6     C6     C 0 1 Y N N 9.762  8.005  9.478  -7.722 -2.309 0.230  C6     F3A 6  
F3A N6     N6     N 0 1 N N N 11.054 7.850  10.088 -8.183 -3.293 1.087  N6     F3A 7  
F3A N7     N7     N 0 1 Y N N 8.458  7.262  11.535 -5.558 -1.732 1.445  N7     F3A 8  
F3A C8     C8     C 0 1 Y N N 7.119  7.092  11.760 -4.610 -0.877 1.195  C8     F3A 9  
F3A N9     N9     N 0 1 Y N N 6.437  7.457  10.559 -4.892 -0.191 0.051  N9     F3A 10 
F3A PA     PA     P 0 1 N N N 4.985  5.345  15.032 1.664  1.205  0.619  PA     F3A 11 
F3A PB     PB     P 0 1 N N N 3.842  2.568  14.107 4.372  0.002  0.333  PB     F3A 12 
F3A PG     PG     P 0 1 N N N 3.679  1.201  16.481 6.820  -1.463 -0.469 PG     F3A 13 
F3A "C1'"  "C1'"  C 0 1 N N R 5.034  7.252  10.340 -4.066 0.855  -0.558 "C1'"  F3A 14 
F3A F1A    F1A    F 0 1 N N N 6.108  3.729  13.403 2.135  -1.164 -0.451 F1A    F3A 15 
F3A O1A    O1A    O 0 1 N N N 3.845  5.453  16.069 1.555  0.606  2.110  O1A    F3A 16 
F3A O1B    O1B    O 0 1 N N N 3.904  2.209  12.614 4.272  -0.549 1.704  O1B    F3A 17 
F3A O1G    O1G    O 0 1 N N N 4.850  0.490  17.218 7.308  -1.984 -1.913 O1G    F3A 18 
F3A "C2'"  "C2'"  C 0 1 N N N 4.412  5.990  9.763  -4.495 2.247  -0.043 "C2'"  F3A 19 
F3A F2A    F2A    F 0 1 N N N 5.974  2.965  15.451 2.802  0.632  -1.696 F2A    F3A 20 
F3A O2A    O2A    O 0 1 N N N 6.228  5.928  15.612 2.270  2.555  0.673  O2A    F3A 21 
F3A O2B    O2B    O 0 1 N N N 2.532  3.215  14.389 5.030  1.470  0.392  O2B    F3A 22 
F3A O2G    O2G    O 0 1 N N N 2.361  0.420  16.777 7.680  -0.340 -0.034 O2G    F3A 23 
F3A "C3'"  "C3'"  C 0 1 N N S 3.933  5.332  10.985 -3.167 3.025  0.087  "C3'"  F3A 24 
F3A "O3'"  "O3'"  O 0 1 N N N 3.207  4.161  10.885 -3.170 4.168  -0.771 "O3'"  F3A 25 
F3A C3A    C3A    C 0 1 N N N 5.317  3.612  14.485 2.707  0.112  -0.400 C3A    F3A 26 
F3A O3B    O3B    O 0 1 N N N 3.945  1.238  14.937 5.293  -0.964 -0.567 O3B    F3A 27 
F3A O3G    O3G    O 0 1 N N N 3.631  2.607  16.992 6.925  -2.664 0.598  O3G    F3A 28 
F3A "C4'"  "C4'"  C 0 1 N N R 3.360  6.480  11.802 -2.092 2.011  -0.365 "C4'"  F3A 29 
F3A "O4'"  "O4'"  O 0 1 N N N 3.983  7.728  11.279 -2.690 0.716  -0.142 "O4'"  F3A 30 
F3A "C5'"  "C5'"  C 0 1 N N N 3.330  6.307  13.283 -0.826 2.165  0.479  "C5'"  F3A 31 
F3A "O5'"  "O5'"  O 0 1 N N N 4.629  6.242  13.787 0.193  1.302  -0.029 "O5'"  F3A 32 
F3A H2     H2     H 0 1 N N N 8.299  8.804  6.555  -8.584 -0.779 -2.535 H2     F3A 33 
F3A HN6    HN6    H 0 1 N N N 11.766 8.066  9.420  -9.024 -3.740 0.904  HN6    F3A 34 
F3A HN6A   HN6A   H 0 0 N N N 11.130 8.470  10.869 -7.665 -3.535 1.871  HN6A   F3A 35 
F3A H8     H8     H 0 1 N N N 6.663  6.746  12.676 -3.730 -0.731 1.804  H8     F3A 36 
F3A "H1'"  "H1'"  H 0 1 N N N 5.303  7.969  9.550  -4.141 0.812  -1.645 "H1'"  F3A 37 
F3A HO1A   HO1A   H 0 0 N N N 4.173  5.867  16.859 1.166  -0.278 2.151  HO1A   F3A 38 
F3A HO1G   HO1G   H 0 0 N N N 4.517  -0.264 17.689 8.222  -2.301 -1.928 HO1G   F3A 39 
F3A "H2'"  "H2'"  H 0 1 N N N 3.597  6.209  9.057  -5.154 2.734  -0.762 "H2'"  F3A 40 
F3A "H2'A" "H2'A" H 0 0 N N N 5.141  5.376  9.214  -4.984 2.161  0.928  "H2'A" F3A 41 
F3A HO2B   HO2B   H 0 0 N N N 2.024  3.264  13.588 5.127  1.892  -0.472 HO2B   F3A 42 
F3A "H3'"  "H3'"  H 0 1 N N N 4.756  4.825  11.510 -2.999 3.323  1.122  "H3'"  F3A 43 
F3A "HO3'" "HO3'" H 0 0 N N N 3.521  3.537  11.529 -3.865 4.809  -0.569 "HO3'" F3A 44 
F3A HO3G   HO3G   H 0 0 N N N 2.792  2.764  17.409 6.386  -3.436 0.376  HO3G   F3A 45 
F3A "H4'"  "H4'"  H 0 1 N N N 2.271  6.526  11.655 -1.862 2.148  -1.422 "H4'"  F3A 46 
F3A "H5'"  "H5'"  H 0 1 N N N 2.808  7.162  13.737 -0.482 3.199  0.434  "H5'"  F3A 47 
F3A "H5'A" "H5'A" H 0 0 N N N 2.799  5.375  13.528 -1.044 1.900  1.514  "H5'A" F3A 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F3A C2    N1     DOUB Y N 1  
F3A N1    C6     SING Y N 2  
F3A C2    N3     SING Y N 3  
F3A C2    H2     SING N N 4  
F3A N3    C4     DOUB Y N 5  
F3A C4    C5     SING Y N 6  
F3A C4    N9     SING Y N 7  
F3A C6    C5     DOUB Y N 8  
F3A C5    N7     SING Y N 9  
F3A C6    N6     SING N N 10 
F3A N6    HN6    SING N N 11 
F3A N6    HN6A   SING N N 12 
F3A N7    C8     DOUB Y N 13 
F3A N9    C8     SING Y N 14 
F3A C8    H8     SING N N 15 
F3A "C1'" N9     SING N N 16 
F3A "O5'" PA     SING N N 17 
F3A C3A   PA     SING N N 18 
F3A PA    O2A    DOUB N N 19 
F3A PA    O1A    SING N N 20 
F3A O1B   PB     DOUB N N 21 
F3A PB    O2B    SING N N 22 
F3A PB    C3A    SING N N 23 
F3A PB    O3B    SING N N 24 
F3A O3B   PG     SING N N 25 
F3A PG    O2G    DOUB N N 26 
F3A PG    O3G    SING N N 27 
F3A PG    O1G    SING N N 28 
F3A "C2'" "C1'"  SING N N 29 
F3A "C1'" "O4'"  SING N N 30 
F3A "C1'" "H1'"  SING N N 31 
F3A F1A   C3A    SING N N 32 
F3A O1A   HO1A   SING N N 33 
F3A O1G   HO1G   SING N N 34 
F3A "C2'" "C3'"  SING N N 35 
F3A "C2'" "H2'"  SING N N 36 
F3A "C2'" "H2'A" SING N N 37 
F3A C3A   F2A    SING N N 38 
F3A O2B   HO2B   SING N N 39 
F3A "O3'" "C3'"  SING N N 40 
F3A "C3'" "C4'"  SING N N 41 
F3A "C3'" "H3'"  SING N N 42 
F3A "O3'" "HO3'" SING N N 43 
F3A O3G   HO3G   SING N N 44 
F3A "O4'" "C4'"  SING N N 45 
F3A "C4'" "C5'"  SING N N 46 
F3A "C4'" "H4'"  SING N N 47 
F3A "C5'" "O5'"  SING N N 48 
F3A "C5'" "H5'"  SING N N 49 
F3A "C5'" "H5'A" SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F3A SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)C(F)(F)P(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)CC3O"                                                                                                                                       
F3A InChI            InChI                1.03  "InChI=1S/C11H16F2N5O11P3/c12-11(13,31(22,23)29-32(24,25)26)30(20,21)27-2-6-5(19)1-7(28-6)18-4-17-8-9(14)15-3-16-10(8)18/h3-7,19H,1-2H2,(H,20,21)(H,22,23)(H2,14,15,16)(H2,24,25,26)/t5-,6+,7+/m0/s1" 
F3A InChIKey         InChI                1.03  SRDWTQAPDNVDMA-RRKCRQDMSA-N                                                                                                                                                                           
F3A SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)C(F)(F)[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                  
F3A SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(=O)C(F)(F)[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                      
F3A SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(C(F)(F)[P@](=O)(O)OP(=O)(O)O)O)O)N"                                                                                                              
F3A SMILES           "OpenEye OEToolkits" 1.7.2 "c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(C(F)(F)P(=O)(O)OP(=O)(O)O)O)O)N"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F3A "SYSTEMATIC NAME" ACDLabs              12.01 "2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]adenosine"                                     
F3A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-[bis(fluoranyl)-[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F3A "Create component" 2011-09-07 RCSB 
# 
