data_JMA
# 
_chem_comp.id                                    JMA 
_chem_comp.name                                  "4-(5,6-dichloro-1H-benzimidazol-1-yl)butan-1-ol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H12 Cl2 N2 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-09-11 
_chem_comp.pdbx_modified_date                    2018-10-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        259.132 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JMA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5QF2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JMA C10  C1  C  0 1 Y N N -53.404 31.244 -7.381  2.306  1.442  0.401  C10  JMA 1  
JMA C13  C2  C  0 1 Y N N -55.034 29.550 -7.245  1.836  -0.831 -0.218 C13  JMA 2  
JMA C15  C3  C  0 1 Y N N -54.852 29.200 -8.531  0.527  -0.504 -0.502 C15  JMA 3  
JMA O01  O1  O  0 1 N N N -54.122 25.756 -14.972 -6.354 -1.668 0.444  O01  JMA 4  
JMA C02  C4  C  0 1 N N N -54.342 26.741 -13.892 -5.141 -1.066 0.900  C02  JMA 5  
JMA C03  C5  C  0 1 N N N -53.254 27.907 -14.116 -4.403 -0.443 -0.286 C03  JMA 6  
JMA C04  C6  C  0 1 N N N -53.477 29.143 -13.165 -3.104 0.201  0.202  C04  JMA 7  
JMA C05  C7  C  0 1 N N N -53.906 28.820 -11.689 -2.366 0.824  -0.984 C05  JMA 8  
JMA N06  N1  N  0 1 Y N N -53.496 29.747 -10.630 -1.122 1.441  -0.516 N06  JMA 9  
JMA C07  C8  C  0 1 Y N N -52.499 30.703 -10.859 -0.945 2.748  -0.182 C07  JMA 10 
JMA N08  N2  N  0 1 Y N N -52.338 31.435 -9.681  0.284  2.952  0.191  N08  JMA 11 
JMA C09  C9  C  0 1 Y N N -53.208 30.899 -8.693  0.981  1.788  0.123  C09  JMA 12 
JMA C11  C10 C  0 1 Y N N -54.322 30.543 -6.685  2.724  0.142  0.227  C11  JMA 13 
JMA CL12 CL1 CL 0 0 N N N -54.702 30.946 -5.170  4.372  -0.286 0.566  CL12 JMA 14 
JMA CL14 CL2 CL 0 0 N N N -56.184 28.725 -6.353  2.383  -2.465 -0.431 CL14 JMA 15 
JMA C16  C11 C  0 1 Y N N -53.915 29.870 -9.278  0.089  0.803  -0.332 C16  JMA 16 
JMA H101 H1  H  0 0 N N N -52.845 32.046 -6.922  3.001  2.193  0.747  H101 JMA 17 
JMA H151 H2  H  0 0 N N N -55.435 28.403 -8.970  -0.158 -1.264 -0.847 H151 JMA 18 
JMA H011 H3  H  0 0 N N N -54.744 25.043 -14.883 -6.875 -2.084 1.144  H011 JMA 19 
JMA H021 H4  H  0 0 N N N -55.360 27.153 -13.954 -5.372 -0.292 1.632  H021 JMA 20 
JMA H022 H5  H  0 0 N N N -54.197 26.268 -12.910 -4.510 -1.826 1.361  H022 JMA 21 
JMA H031 H6  H  0 0 N N N -52.252 27.494 -13.926 -4.172 -1.217 -1.018 H031 JMA 22 
JMA H032 H7  H  0 0 N N N -53.317 28.251 -15.159 -5.034 0.317  -0.748 H032 JMA 23 
JMA H041 H8  H  0 0 N N N -52.534 29.708 -13.123 -3.335 0.975  0.934  H041 JMA 24 
JMA H042 H9  H  0 0 N N N -54.261 29.772 -13.612 -2.473 -0.559 0.664  H042 JMA 25 
JMA H051 H10 H  0 0 N N N -55.005 28.771 -11.672 -2.135 0.050  -1.716 H051 JMA 26 
JMA H052 H11 H  0 0 N N N -53.491 27.833 -11.437 -2.997 1.584  -1.446 H052 JMA 27 
JMA H071 H12 H  0 0 N N N -51.953 30.848 -11.780 -1.714 3.506  -0.222 H071 JMA 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JMA O01 C02  SING N N 1  
JMA C03 C02  SING N N 2  
JMA C03 C04  SING N N 3  
JMA C04 C05  SING N N 4  
JMA C05 N06  SING N N 5  
JMA C07 N06  SING Y N 6  
JMA C07 N08  DOUB Y N 7  
JMA N06 C16  SING Y N 8  
JMA N08 C09  SING Y N 9  
JMA C16 C09  DOUB Y N 10 
JMA C16 C15  SING Y N 11 
JMA C09 C10  SING Y N 12 
JMA C15 C13  DOUB Y N 13 
JMA C10 C11  DOUB Y N 14 
JMA C13 C11  SING Y N 15 
JMA C13 CL14 SING N N 16 
JMA C11 CL12 SING N N 17 
JMA C10 H101 SING N N 18 
JMA C15 H151 SING N N 19 
JMA O01 H011 SING N N 20 
JMA C02 H021 SING N N 21 
JMA C02 H022 SING N N 22 
JMA C03 H031 SING N N 23 
JMA C03 H032 SING N N 24 
JMA C04 H041 SING N N 25 
JMA C04 H042 SING N N 26 
JMA C05 H051 SING N N 27 
JMA C05 H052 SING N N 28 
JMA C07 H071 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JMA SMILES           ACDLabs              12.01 "c1c(c(Cl)cc2n(CCCCO)cnc12)Cl"                                                      
JMA InChI            InChI                1.03  "InChI=1S/C11H12Cl2N2O/c12-8-5-10-11(6-9(8)13)15(7-14-10)3-1-2-4-16/h5-7,16H,1-4H2" 
JMA InChIKey         InChI                1.03  FITCEBBVLDFPRJ-UHFFFAOYSA-N                                                         
JMA SMILES_CANONICAL CACTVS               3.385 "OCCCCn1cnc2cc(Cl)c(Cl)cc12"                                                        
JMA SMILES           CACTVS               3.385 "OCCCCn1cnc2cc(Cl)c(Cl)cc12"                                                        
JMA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1c2c(cc(c1Cl)Cl)n(cn2)CCCCO"                                                      
JMA SMILES           "OpenEye OEToolkits" 2.0.6 "c1c2c(cc(c1Cl)Cl)n(cn2)CCCCO"                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JMA "SYSTEMATIC NAME" ACDLabs              12.01 "4-(5,6-dichloro-1H-benzimidazol-1-yl)butan-1-ol"   
JMA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-[5,6-bis(chloranyl)benzimidazol-1-yl]butan-1-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JMA "Create component" 2018-09-11 RCSB 
JMA "Initial release"  2018-10-10 RCSB 
# 
