data_LPA
# 
_chem_comp.id                                    LPA 
_chem_comp.name                                  "LIPOIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H14 O2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        206.326 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LPA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1X2H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LPA C1  C1  C 0 1 N N N N N N 30.282 84.485 62.483 4.586  0.088  -0.141 C1  LPA 1  
LPA O1  O1  O 0 1 N N N N N N 31.239 84.975 63.172 5.707  0.729  0.222  O1  LPA 2  
LPA C2  C2  C 0 1 N N N N N N 30.560 83.685 61.195 3.273  0.437  0.510  C2  LPA 3  
LPA O2  O2  O 0 1 N N N N N N 29.060 84.607 62.804 4.628  -0.767 -0.995 O2  LPA 4  
LPA C3  C3  C 0 1 N N N N N N 31.430 84.673 60.345 2.161  -0.429 -0.085 C3  LPA 5  
LPA C4  C4  C 0 1 N N N N N N 32.829 84.043 60.317 0.828  -0.074 0.577  C4  LPA 6  
LPA C5  C5  C 0 1 N N N N N N 33.204 83.690 58.871 -0.284 -0.940 -0.018 C5  LPA 7  
LPA C6  C6  C 0 1 N N R N N N 33.646 82.244 58.685 -1.617 -0.585 0.644  C6  LPA 8  
LPA S6  S6  S 0 1 N N N N N N 32.257 81.159 58.775 -2.092 1.123  0.189  S6  LPA 9  
LPA C7  C7  C 0 1 N N N N N N 34.256 82.099 57.290 -2.701 -1.550 0.162  C7  LPA 10 
LPA C8  C8  C 0 1 N N N N N N 33.326 81.628 56.151 -4.121 -0.951 0.211  C8  LPA 11 
LPA S8  S8  S 0 1 N N N N N N 32.001 80.688 56.844 -3.941 0.676  -0.635 S8  LPA 12 
LPA HO1 HO1 H 0 1 N N N N N N 30.886 85.425 63.931 6.524  0.473  -0.227 HO1 LPA 13 
LPA H2  H2  H 0 1 N N N N N N 31.098 82.749 61.406 3.340  0.256  1.583  H2  LPA 14 
LPA H2A H2A H 0 1 N N N N N N 29.629 83.415 60.676 3.048  1.489  0.333  H2A LPA 15 
LPA H3  H3  H 0 1 N N N N N N 31.025 84.780 59.328 2.094  -0.247 -1.158 H3  LPA 16 
LPA H3A H3A H 0 1 N N N N N N 31.456 85.672 60.805 2.386  -1.481 0.092  H3A LPA 17 
LPA H4  H4  H 0 1 N N N N N N 33.561 84.758 60.721 0.895  -0.256 1.650  H4  LPA 18 
LPA H4A H4A H 0 1 N N N N N N 32.832 83.129 60.930 0.603  0.978  0.400  H4A LPA 19 
LPA H5  H5  H 0 1 N N N N N N 32.320 83.860 58.239 -0.351 -0.759 -1.091 H5  LPA 20 
LPA H5A H5A H 0 1 N N N N N N 34.035 84.342 58.566 -0.059 -1.992 0.159  H5A LPA 21 
LPA H6  H6  H 0 1 N N N N N N 34.369 81.988 59.473 -1.519 -0.661 1.727  H6  LPA 22 
LPA H7  H7  H 0 1 N N N N N N 34.636 83.091 57.003 -2.480 -1.841 -0.865 H7  LPA 23 
LPA H7A H7A H 0 1 N N N N N N 35.064 81.357 57.370 -2.680 -2.442 0.789  H7A LPA 24 
LPA H8  H8  H 0 1 N N N N N N 32.921 82.502 55.619 -4.824 -1.587 -0.328 H8  LPA 25 
LPA H8A H8A H 0 1 N N N N N N 33.893 81.003 55.445 -4.443 -0.812 1.243  H8A LPA 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LPA C2 C1  SING N N 1  
LPA C1 O2  DOUB N N 2  
LPA C1 O1  SING N N 3  
LPA O1 HO1 SING N N 4  
LPA C3 C2  SING N N 5  
LPA C2 H2  SING N N 6  
LPA C2 H2A SING N N 7  
LPA C4 C3  SING N N 8  
LPA C3 H3  SING N N 9  
LPA C3 H3A SING N N 10 
LPA C5 C4  SING N N 11 
LPA C4 H4  SING N N 12 
LPA C4 H4A SING N N 13 
LPA C6 C5  SING N N 14 
LPA C5 H5  SING N N 15 
LPA C5 H5A SING N N 16 
LPA C7 C6  SING N N 17 
LPA C6 S6  SING N N 18 
LPA C6 H6  SING N N 19 
LPA S8 S6  SING N N 20 
LPA C8 C7  SING N N 21 
LPA C7 H7  SING N N 22 
LPA C7 H7A SING N N 23 
LPA C8 S8  SING N N 24 
LPA C8 H8  SING N N 25 
LPA C8 H8A SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LPA SMILES           ACDLabs              12.01 "O=C(O)CCCCC1SSCC1"                                                             
LPA InChI            InChI                1.03  "InChI=1S/C8H14O2S2/c9-8(10)4-2-1-3-7-5-6-11-12-7/h7H,1-6H2,(H,9,10)/t7-/m1/s1" 
LPA InChIKey         InChI                1.03  AGBQKNBQESQNJD-SSDOTTSWSA-N                                                     
LPA SMILES_CANONICAL CACTVS               3.370 "OC(=O)CCCC[C@@H]1CCSS1"                                                        
LPA SMILES           CACTVS               3.370 "OC(=O)CCCC[CH]1CCSS1"                                                          
LPA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1CSS[C@@H]1CCCCC(=O)O"                                                        
LPA SMILES           "OpenEye OEToolkits" 1.7.2 "C1CSSC1CCCCC(=O)O"                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LPA "SYSTEMATIC NAME" ACDLabs              12.01 "5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid" 
LPA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LPA "Create component"   1999-07-08 RCSB 
LPA "Modify descriptor"  2011-06-04 RCSB 
LPA "Other modification" 2011-09-08 RCSB 
LPA "Modify synonyms"    2020-06-05 PDBE 
LPA "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      LPA 
_pdbx_chem_comp_synonyms.name         "5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LPA 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               Lipoylation 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      PTM-0383 
# 
