data_6HB
# 
_chem_comp.id                                    6HB 
_chem_comp.name                                  
;2'-deoxy-N-[(2S)-2-hydroxybut-3-en-1-yl]adenosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C14 H20 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               DA 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-18 
_chem_comp.pdbx_modified_date                    2014-10-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        401.312 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6HB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2MNX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6HB P      P      P 0 1 N N N 7.596  -6.448  18.878 -5.979 -1.628 0.223  P      6HB 1  
6HB OP1    OP1    O 0 1 N N N 8.402  -7.632  19.271 -7.141 -1.040 -0.479 OP1    6HB 2  
6HB OP2    OP2    O 0 1 N N N 7.968  -5.717  17.640 -5.362 -2.820 -0.666 OP2    6HB 3  
6HB "O5'"  "O5'"  O 0 1 N N N 6.039  -6.886  18.754 -4.859 -0.493 0.451  "O5'"  6HB 4  
6HB "C5'"  "C5'"  C 0 1 N N N 5.402  -7.669  19.764 -4.315 0.288  -0.614 "C5'"  6HB 5  
6HB "C4'"  "C4'"  C 0 1 N N R 3.935  -8.017  19.466 -3.282 1.267  -0.052 "C4'"  6HB 6  
6HB "O4'"  "O4'"  O 0 1 N N N 3.097  -6.863  19.572 -2.137 0.555  0.465  "O4'"  6HB 7  
6HB "C1'"  "C1'"  C 0 1 N N R 2.416  -6.691  18.340 -1.042 1.486  0.495  "C1'"  6HB 8  
6HB N9     N9     N 0 1 Y N N 2.400  -5.239  18.047 0.214  0.787  0.212  N9     6HB 9  
6HB C8     C8     C 0 1 Y N N 3.475  -4.411  17.835 0.348  -0.389 -0.465 C8     6HB 10 
6HB N7     N7     N 0 1 Y N N 3.152  -3.182  17.534 1.604  -0.722 -0.532 N7     6HB 11 
6HB C5     C5     C 0 1 Y N N 1.747  -3.196  17.567 2.354  0.216  0.095  C5     6HB 12 
6HB C6     C6     C 0 1 Y N N 0.721  -2.239  17.328 3.728  0.385  0.335  C6     6HB 13 
6HB N6     N6     N 0 1 N N N 0.878  -0.957  16.961 4.646  -0.547 -0.119 N6     6HB 14 
6HB CA     CA     C 0 1 N N N 2.128  -0.194  16.762 6.075  -0.353 0.140  CA     6HB 15 
6HB CB     CB     C 0 1 N N S 2.470  -0.023  15.287 6.864  -1.517 -0.464 CB     6HB 16 
6HB OB     OB     O 0 1 N N N 3.428  1.003   15.221 6.731  -1.496 -1.886 OB     6HB 17 
6HB CC     CC     C 0 1 N N N 3.059  -1.295  14.723 8.319  -1.383 -0.093 CC     6HB 18 
6HB CD     CD     C 0 1 N N N 4.182  -1.416  14.040 8.909  -2.329 0.594  CD     6HB 19 
6HB C4     C4     C 0 1 Y N N 1.286  -4.449  17.893 1.471  1.198  0.575  C4     6HB 20 
6HB N3     N3     N 0 1 Y N N -0.011 -4.856  18.016 1.963  2.241  1.236  N3     6HB 21 
6HB C2     C2     C 0 1 Y N N -0.861 -3.864  17.786 3.259  2.356  1.440  C2     6HB 22 
6HB N1     N1     N 0 1 Y N N -0.570 -2.610  17.452 4.127  1.460  1.007  N1     6HB 23 
6HB "C3'"  "C3'"  C 0 1 N N S 3.767  -8.658  18.078 -2.683 2.139  -1.186 "C3'"  6HB 24 
6HB "C2'"  "C2'"  C 0 1 N N N 3.158  -7.505  17.275 -1.312 2.545  -0.592 "C2'"  6HB 25 
6HB "O3'"  "O3'"  O 0 1 N N N 2.958  -9.826  18.190 -3.495 3.289  -1.427 "O3'"  6HB 26 
6HB H3     H3     H 0 1 N N N 8.722  -6.134  17.240 -4.595 -3.252 -0.267 H3     6HB 27 
6HB "H5''" "H5''" H 0 0 N N N 5.963  -8.609  19.876 -3.836 -0.369 -1.340 "H5''" 6HB 28 
6HB "H5'"  "H5'"  H 0 1 N N N 5.437  -7.107  20.709 -5.115 0.845  -1.102 "H5'"  6HB 29 
6HB "H4'"  "H4'"  H 0 1 N N N 3.614  -8.758  20.212 -3.727 1.892  0.721  "H4'"  6HB 30 
6HB "H1'"  "H1'"  H 0 1 N N N 1.383  -7.062  18.416 -0.988 1.964  1.472  "H1'"  6HB 31 
6HB H8     H8     H 0 1 N N N 4.499  -4.747  17.911 -0.468 -0.960 -0.882 H8     6HB 32 
6HB HN     HN     H 0 1 N N N 0.377  -0.437  17.653 4.343  -1.327 -0.609 HN     6HB 33 
6HB HA1    HA1    H 0 1 N N N 2.952  -0.729  17.257 6.403  0.582  -0.314 HA1    6HB 34 
6HB HA2    HA2    H 0 1 N N N 2.012  0.801   17.216 6.248  -0.316 1.215  HA2    6HB 35 
6HB HB     HB     H 0 1 N N N 1.561  0.244   14.728 6.476  -2.459 -0.076 HB     6HB 36 
6HB HOB    HOB    H 0 1 N N N 3.060  1.804   15.575 7.058  -0.685 -2.300 HOB    6HB 37 
6HB HC     HC     H 0 1 N N N 2.501  -2.203  14.898 8.874  -0.507 -0.394 HC     6HB 38 
6HB HD2    HD2    H 0 1 N N N 4.498  -2.387  13.688 9.952  -2.233 0.860  HD2    6HB 39 
6HB HD1    HD1    H 0 1 N N N 4.785  -0.544  13.833 8.354  -3.205 0.895  HD1    6HB 40 
6HB H2     H2     H 0 1 N N N -1.910 -4.102  17.881 3.625  3.216  1.981  H2     6HB 41 
6HB "H3'"  "H3'"  H 0 1 N N N 4.758  -8.905  17.669 -2.555 1.556  -2.098 "H3'"  6HB 42 
6HB "H2'"  "H2'"  H 0 1 N N N 3.942  -6.902  16.793 -1.367 3.540  -0.150 "H2'"  6HB 43 
6HB "H2''" "H2''" H 0 0 N N N 2.462  -7.881  16.510 -0.539 2.510  -1.360 "H2''" 6HB 44 
6HB H4     H4     H 0 1 N Y N 3.417  -10.482 18.702 -3.162 3.866  -2.128 H4     6HB 45 
6HB OP3    OP3    O 0 1 N Y N ?      ?       ?      -6.451 -2.210 1.648  OP3    6HB 46 
6HB H1     H1     H 0 1 N Y N ?      ?       ?      -7.126 -2.900 1.586  H1     6HB 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6HB CD    CC     DOUB N N 1  
6HB CC    CB     SING N N 2  
6HB OB    CB     SING N N 3  
6HB CB    CA     SING N N 4  
6HB CA    N6     SING N N 5  
6HB N6    C6     SING N N 6  
6HB "C2'" "C3'"  SING N N 7  
6HB "C2'" "C1'"  SING N N 8  
6HB C6    N1     DOUB Y N 9  
6HB C6    C5     SING Y N 10 
6HB N1    C2     SING Y N 11 
6HB N7    C5     SING Y N 12 
6HB N7    C8     DOUB Y N 13 
6HB C5    C4     DOUB Y N 14 
6HB OP2   P      SING N N 15 
6HB C2    N3     DOUB Y N 16 
6HB C8    N9     SING Y N 17 
6HB C4    N3     SING Y N 18 
6HB C4    N9     SING Y N 19 
6HB N9    "C1'"  SING N N 20 
6HB "C3'" "O3'"  SING N N 21 
6HB "C3'" "C4'"  SING N N 22 
6HB "C1'" "O4'"  SING N N 23 
6HB "O5'" P      SING N N 24 
6HB "O5'" "C5'"  SING N N 25 
6HB P     OP1    DOUB N N 26 
6HB "C4'" "O4'"  SING N N 27 
6HB "C4'" "C5'"  SING N N 28 
6HB OP2   H3     SING N N 29 
6HB "C5'" "H5''" SING N N 30 
6HB "C5'" "H5'"  SING N N 31 
6HB "C4'" "H4'"  SING N N 32 
6HB "C1'" "H1'"  SING N N 33 
6HB C8    H8     SING N N 34 
6HB N6    HN     SING N N 35 
6HB CA    HA1    SING N N 36 
6HB CA    HA2    SING N N 37 
6HB CB    HB     SING N N 38 
6HB OB    HOB    SING N N 39 
6HB CC    HC     SING N N 40 
6HB CD    HD2    SING N N 41 
6HB CD    HD1    SING N N 42 
6HB C2    H2     SING N N 43 
6HB "C3'" "H3'"  SING N N 44 
6HB "C2'" "H2'"  SING N N 45 
6HB "C2'" "H2''" SING N N 46 
6HB "O3'" H4     SING N N 47 
6HB P     OP3    SING N N 48 
6HB OP3   H1     SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6HB SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)NCC(O)/C=C)CC3O"                                                                                                                               
6HB InChI            InChI                1.03  "InChI=1S/C14H20N5O7P/c1-2-8(20)4-15-13-12-14(17-6-16-13)19(7-18-12)11-3-9(21)10(26-11)5-25-27(22,23)24/h2,6-11,20-21H,1,3-5H2,(H,15,16,17)(H2,22,23,24)/t8-,9-,10+,11+/m0/s1" 
6HB InChIKey         InChI                1.03  KQKWEOLKIBWBEK-UKKRHICBSA-N                                                                                                                                                    
6HB SMILES_CANONICAL CACTVS               3.385 "O[C@H](CNc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)C=C"                                                                                                           
6HB SMILES           CACTVS               3.385 "O[CH](CNc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)C=C"                                                                                                                
6HB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C=C[C@@H](CNc1c2c(ncn1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)O"                                                                                                          
6HB SMILES           "OpenEye OEToolkits" 1.7.6 "C=CC(CNc1c2c(ncn1)n(cn2)C3CC(C(O3)COP(=O)(O)O)O)O"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6HB "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-N-[(2S)-2-hydroxybut-3-en-1-yl]adenosine 5'-(dihydrogen phosphate)
;
6HB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-3-oxidanyl-5-[6-[[(2S)-2-oxidanylbut-3-enyl]amino]purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6HB "Create component" 2014-04-18 RCSB 
6HB "Initial release"  2014-10-08 RCSB 
# 
