data_JUB
#

_chem_comp.id                                   JUB
_chem_comp.name                                 "[7-[4-[2-[naphthalen-2-ylsulfonyl-[[(3~{S})-1-(phenylmethyl)piperidin-1-ium-3-yl]methyl]amino]ethyl]piperazin-4-ium-1-yl]-2,1,3-benzoxadiazol-4-yl]-oxidanyl-oxidanylidene-azanium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C35 H42 N7 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   3
_chem_comp.pdbx_initial_date                    2019-03-28
_chem_comp.pdbx_modified_date                   2020-01-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       672.817
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JUB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6R6W
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JUB  C32  C1   C  0  1  Y  N  N  129.567  113.827  43.872  -4.404  -7.270   1.435  C32  JUB   1  
JUB  C33  C2   C  0  1  Y  N  N  129.715  112.479  43.573  -3.171  -7.091   0.836  C33  JUB   2  
JUB  C38  C3   C  0  1  Y  N  N  138.276  112.101  39.189  -3.668   3.031  -0.093  C38  JUB   3  
JUB  C37  C4   C  0  1  N  N  N  135.379  109.454  41.290  -3.661  -0.125  -0.067  C37  JUB   4  
JUB  C35  C5   C  0  1  N  N  N  134.572  111.880  41.698  -4.498  -2.468   0.140  C35  JUB   5  
JUB  C39  C6   C  0  1  Y  N  N  137.262  113.031  39.537  -3.239   3.383   1.185  C39  JUB   6  
JUB  C34  C7   C  0  1  Y  N  N  130.578  112.045  42.559  -2.995  -6.084  -0.095  C34  JUB   7  
JUB  C24  C8   C  0  1  N  N  N  135.325  110.250  38.860  -2.283   0.436  -2.075  C24  JUB   8  
JUB  C10  C9   C  0  1  Y  N  N  138.501  103.475  42.703   5.820   0.325  -0.077  C10  JUB   9  
JUB  C30  C10  C  0  1  Y  N  N  131.195  114.339  42.110  -5.284  -5.436   0.172  C30  JUB  10  
JUB  C29  C11  C  0  1  Y  N  N  131.333  112.961  41.799  -4.051  -5.256  -0.427  C29  JUB  11  
JUB  C31  C12  C  0  1  Y  N  N  130.323  114.762  43.133  -5.462  -6.446   1.099  C31  JUB  12  
JUB  C26  C13  C  0  1  N  N  N  133.212  110.109  40.295  -3.122  -1.894  -1.744  C26  JUB  13  
JUB  C04  C14  C  0  1  N  N  N  136.381  108.431  37.665  -0.426   1.501  -0.713  C04  JUB  14  
JUB  C05  C15  C  0  1  N  N  N  136.864  106.990  38.158   0.712   1.704  -1.716  C05  JUB  15  
JUB  C07  C16  C  0  1  N  N  N  136.120  105.927  40.484   2.171   0.231  -0.511  C07  JUB  16  
JUB  C08  C17  C  0  1  N  N  N  136.650  105.177  41.794   3.506   0.124   0.229  C08  JUB  17  
JUB  C22  C18  C  0  1  N  N  N  138.572  104.715  40.296   4.432   1.818  -1.230  C22  JUB  18  
JUB  C23  C19  C  0  1  N  N  N  138.558  106.252  40.007   3.089   1.910  -1.958  C23  JUB  19  
JUB  C25  C20  C  0  1  N  N  S  134.579  109.510  39.989  -2.596  -0.643  -1.037  C25  JUB  20  
JUB  C28  C21  C  0  1  N  N  N  132.281  112.493  40.724  -3.857  -4.155  -1.437  C28  JUB  21  
JUB  C36  C22  C  0  1  N  N  N  135.726  110.850  41.765  -4.024  -1.239   0.919  C36  JUB  22  
JUB  C40  C23  C  0  1  Y  N  N  137.395  114.051  40.436  -4.100   3.383   2.239  C40  JUB  23  
JUB  C41  C24  C  0  1  Y  N  N  138.587  114.322  41.135  -5.443   3.022   2.040  C41  JUB  24  
JUB  C42  C25  C  0  1  Y  N  N  138.728  115.384  42.078  -6.361   3.010   3.103  C42  JUB  25  
JUB  C43  C26  C  0  1  Y  N  N  139.919  115.571  42.726  -7.655   2.655   2.872  C43  JUB  26  
JUB  C44  C27  C  0  1  Y  N  N  140.994  114.710  42.448  -8.085   2.302   1.594  C44  JUB  27  
JUB  C45  C28  C  0  1  Y  N  N  140.856  113.698  41.541  -7.224   2.302   0.540  C45  JUB  28  
JUB  C46  C29  C  0  1  Y  N  N  139.653  113.447  40.838  -5.880   2.663   0.740  C46  JUB  29  
JUB  C47  C30  C  0  1  Y  N  N  139.463  112.376  39.885  -4.962   2.676  -0.324  C47  JUB  30  
JUB  N03  N1   N  0  1  N  N  N  136.604  109.675  38.448  -1.712   1.608  -1.405  N03  JUB  31  
JUB  N06  N2   N  1  1  N  N  N  137.147  106.833  39.698   2.002   1.598  -1.021  N06  JUB  32  
JUB  N09  N3   N  0  1  N  N  N  137.944  104.405  41.620   4.602   0.461  -0.692  N09  JUB  33  
JUB  N27  N4   N  1  1  N  N  N  133.182  111.331  41.264  -3.426  -2.930  -0.750  N27  JUB  34  
JUB  O01  O1   O  0  1  N  N  N  139.035  109.950  37.768  -3.296   3.057  -2.622  O01  JUB  35  
JUB  O48  O2   O  0  1  N  N  N  137.367  111.401  36.805  -1.564   4.055  -1.122  O48  JUB  36  
JUB  S02  S1   S  0  1  N  N  N  137.934  110.841  37.983  -2.522   3.052  -1.431  S02  JUB  37  
JUB  H1   H1   H  0  1  N  N  N  128.891  114.151  44.650  -4.542  -8.056   2.162  H1   JUB  38  
JUB  H2   H2   H  0  1  N  N  N  129.152  111.749  44.135  -2.346  -7.737   1.095  H2   JUB  39  
JUB  H3   H3   H  0  1  N  N  N  134.779  108.949  42.061  -3.270   0.733   0.480  H3   JUB  40  
JUB  H4   H4   H  0  1  N  N  N  136.307  108.889  41.119  -4.550   0.172  -0.624  H4   JUB  41  
JUB  H5   H5   H  0  1  N  N  N  134.862  112.662  40.981  -4.757  -3.263   0.840  H5   JUB  42  
JUB  H6   H6   H  0  1  N  N  N  136.304  112.923  39.050  -2.207   3.661   1.341  H6   JUB  43  
JUB  H7   H7   H  0  1  N  N  N  130.667  110.988  42.355  -2.031  -5.944  -0.563  H7   JUB  44  
JUB  H8   H8   H  0  1  N  N  N  135.513  111.279  39.200  -1.566   0.047  -2.799  H8   JUB  45  
JUB  H9   H9   H  0  1  N  N  N  134.666  110.270  37.979  -3.200   0.723  -2.590  H9   JUB  46  
JUB  H13  H13  H  0  1  N  N  N  131.764  115.071  41.557  -6.110  -4.792  -0.091  H13  JUB  47  
JUB  H14  H14  H  0  1  N  N  N  130.232  115.815  43.354  -6.425  -6.586   1.566  H14  JUB  48  
JUB  H15  H15  H  0  1  N  N  N  132.768  110.429  39.341  -4.028  -1.645  -2.296  H15  JUB  49  
JUB  H16  H16  H  0  1  N  N  N  132.593  109.316  40.740  -2.366  -2.265  -2.435  H16  JUB  50  
JUB  H17  H17  H  0  1  N  N  N  136.866  108.596  36.691  -0.338   0.514  -0.259  H17  JUB  51  
JUB  H18  H18  H  0  1  N  N  N  135.293  108.353  37.524  -0.366   2.265   0.063  H18  JUB  52  
JUB  H19  H19  H  0  1  N  N  N  136.083  106.265  37.886   0.652   0.941  -2.491  H19  JUB  53  
JUB  H20  H20  H  0  1  N  N  N  137.793  106.747  37.621   0.624   2.691  -2.170  H20  JUB  54  
JUB  H21  H21  H  0  1  N  N  N  135.280  106.569  40.789   2.160  -0.472  -1.343  H21  JUB  55  
JUB  H22  H22  H  0  1  N  N  N  135.759  105.157  39.787   1.357  -0.005   0.174  H22  JUB  56  
JUB  H23  H23  H  0  1  N  N  N  136.808  105.933  42.578   3.513   0.817   1.070  H23  JUB  57  
JUB  H24  H24  H  0  1  N  N  N  135.873  104.469  42.118   3.639  -0.894   0.596  H24  JUB  58  
JUB  H25  H25  H  0  1  N  N  N  138.012  104.196  39.504   5.240   2.035  -1.929  H25  JUB  59  
JUB  H26  H26  H  0  1  N  N  N  139.613  104.361  40.302   4.454   2.539  -0.413  H26  JUB  60  
JUB  H27  H27  H  0  1  N  N  N  139.208  106.446  39.141   2.955   2.920  -2.346  H27  JUB  61  
JUB  H28  H28  H  0  1  N  N  N  138.959  106.772  40.889   3.073   1.199  -2.783  H28  JUB  62  
JUB  H29  H29  H  0  1  N  N  N  134.420  108.475  39.653  -1.690  -0.890  -0.484  H29  JUB  63  
JUB  H30  H30  H  0  1  N  N  N  132.920  113.333  40.412  -3.096  -4.453  -2.158  H30  JUB  64  
JUB  H31  H31  H  0  1  N  N  N  131.702  112.132  39.861  -4.797  -3.969  -1.957  H31  JUB  65  
JUB  H32  H32  H  0  1  N  N  N  136.058  110.780  42.811  -3.148  -1.500   1.513  H32  JUB  66  
JUB  H33  H33  H  0  1  N  N  N  136.540  114.684  40.621  -3.752   3.658   3.224  H33  JUB  67  
JUB  H34  H34  H  0  1  N  N  N  137.895  116.040  42.280  -6.043   3.280   4.099  H34  JUB  68  
JUB  H35  H35  H  0  1  N  N  N  140.031  116.371  43.443  -8.359   2.647   3.691  H35  JUB  69  
JUB  H36  H36  H  0  1  N  N  N  141.937  114.849  42.956  -9.116   2.024   1.438  H36  JUB  70  
JUB  H37  H37  H  0  1  N  N  N  141.705  113.059  41.351  -7.571   2.026  -0.444  H37  JUB  71  
JUB  H38  H38  H  0  1  N  N  N  140.308  111.732  39.692  -5.281   2.405  -1.319  H38  JUB  72  
JUB  C1   C31  C  0  1  Y  N  N        ?        ?       ?   6.151   1.131   1.005  C1   JUB  73  
JUB  C2   C32  C  0  1  Y  N  N        ?        ?       ?   7.358   1.036   1.657  C2   JUB  74  
JUB  C3   C33  C  0  1  Y  N  N        ?        ?       ?   8.346   0.112   1.272  C3   JUB  75  
JUB  C4   C34  C  0  1  Y  N  N        ?        ?       ?   8.084  -0.783   0.139  C4   JUB  76  
JUB  C5   C35  C  0  1  Y  N  N        ?        ?       ?   6.776  -0.674  -0.552  C5   JUB  77  
JUB  N2   N5   N  0  1  Y  N  N        ?        ?       ?   6.864  -1.583  -1.483  N2   JUB  78  
JUB  O1   O3   O  0  1  Y  N  N        ?        ?       ?   7.948  -2.128  -1.404  O1   JUB  79  
JUB  N1   N6   N  0  1  Y  N  N        ?        ?       ?   8.682  -1.735  -0.518  N1   JUB  80  
JUB  N3   N7   N  1  1  N  N  N        ?        ?       ?   9.500   0.049   1.925  N3   JUB  81  
JUB  O2   O4   O  0  1  N  N  N        ?        ?       ?   9.744   0.918   3.017  O2   JUB  82  
JUB  O3   O5   O  0  1  N  N  N        ?        ?       ?  10.350  -0.754   1.586  O3   JUB  83  
JUB  H10  H10  H  0  1  N  N  N        ?        ?       ?   5.433   1.862   1.347  H10  JUB  84  
JUB  H11  H11  H  0  1  N  N  N        ?        ?       ?   7.555   1.694   2.491  H11  JUB  85  
JUB  H12  H12  H  0  1  N  N  N        ?        ?       ?  10.611   0.798   3.429  H12  JUB  86  
JUB  H39  H39  H  0  1  N  N  N  137.104  107.747  40.102   2.024   2.249  -0.251  H39  JUB  87  
JUB  H40  H40  H  0  1  N  N  N  134.460  112.323  42.699  -5.374  -2.206  -0.453  H40  JUB  88  
JUB  H41  H41  H  0  1  N  N  N  136.552  111.225  41.143  -4.822  -0.896   1.578  H41  JUB  89  
JUB  H42  H42  H  0  1  N  N  N  132.740  111.008  42.101  -2.599  -3.125  -0.205  H42  JUB  90  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JUB  O48  S02  DOUB  N  N   1  
JUB  C04  C05  SING  N  N   2  
JUB  C04  N03  SING  N  N   3  
JUB  O01  S02  DOUB  N  N   4  
JUB  S02  N03  SING  N  N   5  
JUB  S02  C38  SING  N  N   6  
JUB  C05  N06  SING  N  N   7  
JUB  N03  C24  SING  N  N   8  
JUB  C24  C25  SING  N  N   9  
JUB  C38  C39  DOUB  Y  N  10  
JUB  C38  C47  SING  Y  N  11  
JUB  C39  C40  SING  Y  N  12  
JUB  N06  C23  SING  N  N  13  
JUB  N06  C07  SING  N  N  14  
JUB  C47  C46  DOUB  Y  N  15  
JUB  C25  C26  SING  N  N  16  
JUB  C25  C37  SING  N  N  17  
JUB  C23  C22  SING  N  N  18  
JUB  C26  N27  SING  N  N  19  
JUB  C22  N09  SING  N  N  20  
JUB  C40  C41  DOUB  Y  N  21  
JUB  C07  C08  SING  N  N  22  
JUB  C28  N27  SING  N  N  23  
JUB  C28  C29  SING  N  N  24  
JUB  C46  C41  SING  Y  N  25  
JUB  C46  C45  SING  Y  N  26  
JUB  C41  C42  SING  Y  N  27  
JUB  N27  C35  SING  N  N  28  
JUB  C37  C36  SING  N  N  29  
JUB  C45  C44  DOUB  Y  N  30  
JUB  N09  C08  SING  N  N  31  
JUB  N09  C10  SING  N  N  32  
JUB  C35  C36  SING  N  N  33  
JUB  C29  C30  DOUB  Y  N  34  
JUB  C29  C34  SING  Y  N  35  
JUB  C42  C43  DOUB  Y  N  36  
JUB  C30  C31  SING  Y  N  37  
JUB  C44  C43  SING  Y  N  38  
JUB  C34  C33  DOUB  Y  N  39  
JUB  C31  C32  DOUB  Y  N  40  
JUB  C33  C32  SING  Y  N  41  
JUB  C32  H1   SING  N  N  42  
JUB  C33  H2   SING  N  N  43  
JUB  C37  H3   SING  N  N  44  
JUB  C37  H4   SING  N  N  45  
JUB  C35  H5   SING  N  N  46  
JUB  C39  H6   SING  N  N  47  
JUB  C34  H7   SING  N  N  48  
JUB  C24  H8   SING  N  N  49  
JUB  C24  H9   SING  N  N  50  
JUB  C30  H13  SING  N  N  51  
JUB  C31  H14  SING  N  N  52  
JUB  C26  H15  SING  N  N  53  
JUB  C26  H16  SING  N  N  54  
JUB  C04  H17  SING  N  N  55  
JUB  C04  H18  SING  N  N  56  
JUB  C05  H19  SING  N  N  57  
JUB  C05  H20  SING  N  N  58  
JUB  C07  H21  SING  N  N  59  
JUB  C07  H22  SING  N  N  60  
JUB  C08  H23  SING  N  N  61  
JUB  C08  H24  SING  N  N  62  
JUB  C22  H25  SING  N  N  63  
JUB  C22  H26  SING  N  N  64  
JUB  C23  H27  SING  N  N  65  
JUB  C23  H28  SING  N  N  66  
JUB  C25  H29  SING  N  N  67  
JUB  C28  H30  SING  N  N  68  
JUB  C28  H31  SING  N  N  69  
JUB  C36  H32  SING  N  N  70  
JUB  C40  H33  SING  N  N  71  
JUB  C42  H34  SING  N  N  72  
JUB  C43  H35  SING  N  N  73  
JUB  C44  H36  SING  N  N  74  
JUB  C45  H37  SING  N  N  75  
JUB  C47  H38  SING  N  N  76  
JUB  C10  C1   DOUB  Y  N  77  
JUB  C1   C2   SING  Y  N  78  
JUB  C2   C3   DOUB  Y  N  79  
JUB  C3   C4   SING  Y  N  80  
JUB  C4   C5   SING  Y  N  81  
JUB  C5   C10  SING  Y  N  82  
JUB  C5   N2   DOUB  Y  N  83  
JUB  N2   O1   SING  Y  N  84  
JUB  O1   N1   SING  Y  N  85  
JUB  N1   C4   DOUB  Y  N  86  
JUB  C3   N3   SING  N  N  87  
JUB  N3   O2   SING  N  N  88  
JUB  N3   O3   DOUB  N  N  89  
JUB  C1   H10  SING  N  N  90  
JUB  C2   H11  SING  N  N  91  
JUB  O2   H12  SING  N  N  92  
JUB  N06  H39  SING  N  N  93  
JUB  C35  H40  SING  N  N  94  
JUB  C36  H41  SING  N  N  95  
JUB  N27  H42  SING  N  N  96  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JUB  InChI             InChI                 1.03   "InChI=1S/C35H40N7O5S/c43-42(44)33-15-14-32(34-35(33)37-47-36-34)40-20-17-38(18-21-40)19-22-41(48(45,46)31-13-12-29-10-4-5-11-30(29)23-31)26-28-9-6-16-39(25-28)24-27-7-2-1-3-8-27/h1-5,7-8,10-15,23,28H,6,9,16-22,24-26H2,(H,43,44)/q+1/p+2/t28-/m0/s1"  
JUB  InChIKey          InChI                 1.03   QBNBLJUWYPBAGF-NDEPHWFRSA-P  
JUB  SMILES_CANONICAL  CACTVS                3.385  "O[N+](=O)c1ccc(N2CC[NH+](CC2)CCN(C[C@H]3CCC[NH+](C3)Cc4ccccc4)[S](=O)(=O)c5ccc6ccccc6c5)c7nonc17"  
JUB  SMILES            CACTVS                3.385  "O[N+](=O)c1ccc(N2CC[NH+](CC2)CCN(C[CH]3CCC[NH+](C3)Cc4ccccc4)[S](=O)(=O)c5ccc6ccccc6c5)c7nonc17"  
JUB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C[NH+]2CCC[C@@H](C2)CN(CC[NH+]3CCN(CC3)c4ccc(c5c4non5)[N+](=O)O)S(=O)(=O)c6ccc7ccccc7c6"  
JUB  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C[NH+]2CCCC(C2)CN(CC[NH+]3CCN(CC3)c4ccc(c5c4non5)[N+](=O)O)S(=O)(=O)c6ccc7ccccc7c6"  
#
_pdbx_chem_comp_identifier.comp_id          JUB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[7-[4-[2-[naphthalen-2-ylsulfonyl-[[(3~{S})-1-(phenylmethyl)piperidin-1-ium-3-yl]methyl]amino]ethyl]piperazin-4-ium-1-yl]-2,1,3-benzoxadiazol-4-yl]-oxidanyl-oxidanylidene-azanium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JUB  "Create component"  2019-03-28  RCSB  
JUB  "Initial release"   2020-01-15  RCSB  
##
