data_NUB
#

_chem_comp.id                                   NUB
_chem_comp.name                                 "1,3-dimethyl-5-[1-(oxan-4-ylmethyl)benzimidazol-2-yl]pyridin-2-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H23 N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "1,3-dimethyl-5-(1-((tetrahydro-2H-pyran-4-yl)methyl)-1H-benzo[d]imidazol-2-yl)pyridin-2(1H)-one"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-12-16
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       337.416
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NUB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TPY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NUB  C20  C1   C  0  1  Y  N  N  30.743  50.758   0.816   2.549   1.922   0.405  C20  NUB   1  
NUB  C21  C2   C  0  1  Y  N  N  31.850  51.256   1.501   3.711   2.587   0.810  C21  NUB   2  
NUB  C01  C3   C  0  1  N  N  N  24.131  49.824  -0.864  -3.755   1.115  -2.590  C01  NUB   3  
NUB  C05  C4   C  0  1  N  N  N  25.334  49.149  -0.271  -2.997   1.116  -1.287  C05  NUB   4  
NUB  C06  C5   C  0  1  N  N  N  26.559  49.708  -0.313  -1.638   1.173  -1.284  C06  NUB   5  
NUB  C08  C6   C  0  1  N  N  N  27.699  49.077   0.286  -0.953   1.173  -0.047  C08  NUB   6  
NUB  C09  C7   C  0  1  N  N  N  27.499  47.926   0.928  -1.671   1.116   1.127  C09  NUB   7  
NUB  N11  N1   N  0  1  N  N  N  26.274  47.330   0.963  -3.019   1.060   1.102  N11  NUB   8  
NUB  C12  C8   C  0  1  N  N  N  26.092  46.067   1.666  -3.762   1.000   2.363  C12  NUB   9  
NUB  C16  C9   C  0  1  N  N  N  25.144  47.926   0.396  -3.691   1.064  -0.064  C16  NUB  10  
NUB  O17  O1   O  0  1  N  N  N  24.052  47.343   0.460  -4.910   1.018  -0.061  O17  NUB  11  
NUB  C18  C10  C  0  1  Y  N  N  28.934  49.788   0.211   0.524   1.234  -0.014  C18  NUB  12  
NUB  N19  N2   N  0  1  Y  N  N  29.678  49.982   1.275   1.227   2.177   0.564  N19  NUB  13  
NUB  C23  C11  C  0  1  Y  N  N  32.767  52.025   0.806   4.936   2.072   0.491  C23  NUB  14  
NUB  C25  C12  C  0  1  Y  N  N  32.587  52.307  -0.534   5.041   0.893  -0.233  C25  NUB  15  
NUB  C27  C13  C  0  1  Y  N  N  31.504  51.807  -1.228   3.909   0.221  -0.643  C27  NUB  16  
NUB  C29  C14  C  0  1  Y  N  N  30.582  51.055  -0.521   2.656   0.731  -0.333  C29  NUB  17  
NUB  N30  N3   N  0  1  Y  N  N  29.392  50.452  -0.904   1.362   0.316  -0.587  N30  NUB  18  
NUB  C31  C15  C  0  1  N  N  N  28.906  50.471  -2.290   0.964  -0.888  -1.320  C31  NUB  19  
NUB  C34  C16  C  0  1  N  N  N  29.277  49.219  -3.051   0.956  -2.086  -0.368  C34  NUB  20  
NUB  C36  C17  C  0  1  N  N  N  30.715  48.791  -2.831   0.664  -3.366  -1.157  C36  NUB  21  
NUB  C39  C18  C  0  1  N  N  N  31.043  47.554  -3.636   0.581  -4.547  -0.186  C39  NUB  22  
NUB  O42  O2   O  0  1  N  N  N  30.736  47.732  -5.013  -0.431  -4.289   0.789  O42  NUB  23  
NUB  C43  C19  C  0  1  N  N  N  29.378  48.099  -5.202  -0.188  -3.130   1.590  C43  NUB  24  
NUB  C46  C20  C  0  1  N  N  N  29.053  49.399  -4.515  -0.135  -1.892   0.690  C46  NUB  25  
NUB  H1   H1   H  0  1  N  N  N  31.989  51.046   2.551   3.640   3.505   1.374  H1   NUB  26  
NUB  H2   H2   H  0  1  N  N  N  23.244  49.191  -0.715  -4.825   1.070  -2.388  H2   NUB  27  
NUB  H3   H3   H  0  1  N  N  N  23.975  50.795  -0.371  -3.527   2.026  -3.143  H3   NUB  28  
NUB  H4   H4   H  0  1  N  N  N  24.293  49.981  -1.941  -3.460   0.247  -3.180  H4   NUB  29  
NUB  H5   H5   H  0  1  N  N  N  26.686  50.658  -0.812  -1.090   1.217  -2.214  H5   NUB  30  
NUB  H6   H6   H  0  1  N  N  N  28.329  47.454   1.433  -1.153   1.115   2.074  H6   NUB  31  
NUB  H7   H7   H  0  1  N  N  N  27.061  45.721   2.056  -3.989   2.012   2.699  H7   NUB  32  
NUB  H8   H8   H  0  1  N  N  N  25.391  46.210   2.501  -4.691   0.451   2.211  H8   NUB  33  
NUB  H9   H9   H  0  1  N  N  N  25.687  45.316   0.972  -3.159   0.494   3.116  H9   NUB  34  
NUB  H10  H10  H  0  1  N  N  N  33.636  52.410   1.319   5.831   2.589   0.805  H10  NUB  35  
NUB  H11  H11  H  0  1  N  N  N  33.306  52.929  -1.047   6.017   0.500  -0.477  H11  NUB  36  
NUB  H12  H12  H  0  1  N  N  N  31.380  51.996  -2.284   3.997  -0.696  -1.207  H12  NUB  37  
NUB  H13  H13  H  0  1  N  N  N  29.343  51.339  -2.805  -0.035  -0.747  -1.734  H13  NUB  38  
NUB  H14  H14  H  0  1  N  N  N  27.810  50.565  -2.278   1.670  -1.072  -2.129  H14  NUB  39  
NUB  H15  H15  H  0  1  N  N  N  28.625  48.405  -2.702   1.927  -2.171   0.119  H15  NUB  40  
NUB  H16  H16  H  0  1  N  N  N  30.866  48.575  -1.763  -0.283  -3.261  -1.685  H16  NUB  41  
NUB  H17  H17  H  0  1  N  N  N  31.384  49.608  -3.139   1.465  -3.540  -1.876  H17  NUB  42  
NUB  H18  H18  H  0  1  N  N  N  30.458  46.708  -3.246   0.331  -5.453  -0.738  H18  NUB  43  
NUB  H19  H19  H  0  1  N  N  N  32.116  47.336  -3.534   1.542  -4.677   0.311  H19  NUB  44  
NUB  H20  H20  H  0  1  N  N  N  29.184  48.207  -6.279  -0.990  -3.016   2.318  H20  NUB  45  
NUB  H21  H21  H  0  1  N  N  N  28.734  47.308  -4.791   0.763  -3.242   2.111  H21  NUB  46  
NUB  H22  H22  H  0  1  N  N  N  29.708  50.196  -4.897   0.095  -1.014   1.293  H22  NUB  47  
NUB  H23  H23  H  0  1  N  N  N  28.002  49.666  -4.701  -1.099  -1.757   0.200  H23  NUB  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NUB  C43  O42  SING  N  N   1  
NUB  C43  C46  SING  N  N   2  
NUB  O42  C39  SING  N  N   3  
NUB  C46  C34  SING  N  N   4  
NUB  C39  C36  SING  N  N   5  
NUB  C34  C36  SING  N  N   6  
NUB  C34  C31  SING  N  N   7  
NUB  C31  N30  SING  N  N   8  
NUB  C27  C25  DOUB  Y  N   9  
NUB  C27  C29  SING  Y  N  10  
NUB  N30  C29  SING  Y  N  11  
NUB  N30  C18  SING  Y  N  12  
NUB  C01  C05  SING  N  N  13  
NUB  C25  C23  SING  Y  N  14  
NUB  C29  C20  DOUB  Y  N  15  
NUB  C06  C05  DOUB  N  N  16  
NUB  C06  C08  SING  N  N  17  
NUB  C05  C16  SING  N  N  18  
NUB  C18  C08  SING  N  N  19  
NUB  C18  N19  DOUB  Y  N  20  
NUB  C08  C09  DOUB  N  N  21  
NUB  C16  O17  DOUB  N  N  22  
NUB  C16  N11  SING  N  N  23  
NUB  C23  C21  DOUB  Y  N  24  
NUB  C20  N19  SING  Y  N  25  
NUB  C20  C21  SING  Y  N  26  
NUB  C09  N11  SING  N  N  27  
NUB  N11  C12  SING  N  N  28  
NUB  C21  H1   SING  N  N  29  
NUB  C01  H2   SING  N  N  30  
NUB  C01  H3   SING  N  N  31  
NUB  C01  H4   SING  N  N  32  
NUB  C06  H5   SING  N  N  33  
NUB  C09  H6   SING  N  N  34  
NUB  C12  H7   SING  N  N  35  
NUB  C12  H8   SING  N  N  36  
NUB  C12  H9   SING  N  N  37  
NUB  C23  H10  SING  N  N  38  
NUB  C25  H11  SING  N  N  39  
NUB  C27  H12  SING  N  N  40  
NUB  C31  H13  SING  N  N  41  
NUB  C31  H14  SING  N  N  42  
NUB  C34  H15  SING  N  N  43  
NUB  C36  H16  SING  N  N  44  
NUB  C36  H17  SING  N  N  45  
NUB  C39  H18  SING  N  N  46  
NUB  C39  H19  SING  N  N  47  
NUB  C43  H20  SING  N  N  48  
NUB  C43  H21  SING  N  N  49  
NUB  C46  H22  SING  N  N  50  
NUB  C46  H23  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NUB  InChI             InChI                 1.03   "InChI=1S/C20H23N3O2/c1-14-11-16(13-22(2)20(14)24)19-21-17-5-3-4-6-18(17)23(19)12-15-7-9-25-10-8-15/h3-6,11,13,15H,7-10,12H2,1-2H3"  
NUB  InChIKey          InChI                 1.03   IWELMDBRVJWCNU-UHFFFAOYSA-N  
NUB  SMILES_CANONICAL  CACTVS                3.385  "CN1C=C(C=C(C)C1=O)c2nc3ccccc3n2CC4CCOCC4"  
NUB  SMILES            CACTVS                3.385  "CN1C=C(C=C(C)C1=O)c2nc3ccccc3n2CC4CCOCC4"  
NUB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1=CC(=CN(C1=O)C)c2nc3ccccc3n2CC4CCOCC4"  
NUB  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1=CC(=CN(C1=O)C)c2nc3ccccc3n2CC4CCOCC4"  
#
_pdbx_chem_comp_identifier.comp_id          NUB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "1,3-dimethyl-5-[1-(oxan-4-ylmethyl)benzimidazol-2-yl]pyridin-2-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NUB  "Create component"  2019-12-16  PDBE  
NUB  "Initial release"   2020-01-15  RCSB  
NUB  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     NUB
_pdbx_chem_comp_synonyms.name        "1,3-dimethyl-5-(1-((tetrahydro-2H-pyran-4-yl)methyl)-1H-benzo[d]imidazol-2-yl)pyridin-2(1H)-one"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
