data_R8B
#

_chem_comp.id                                   R8B
_chem_comp.name                                 "methyl 3-O-((7-carboxy) quinolin-2-yl)-methyl)-beta-D-galactopyranoside"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H21 N O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]quinoline-7-carboxylic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-17
_chem_comp.pdbx_modified_date                   2022-02-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       379.361
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R8B
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AEN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R8B  O7   O1   O  0  1  N  N  N   4.392  -0.363   7.314   7.142  -1.764   1.314  O7   R8B   1  
R8B  C17  C1   C  0  1  N  N  N   5.607  -0.689   7.240   7.204  -0.809   0.565  C17  R8B   2  
R8B  O6   O2   O  0  1  N  N  N   6.607  -0.016   7.697   8.402  -0.363   0.141  O6   R8B   3  
R8B  C15  C2   C  0  1  Y  N  N   5.944  -2.004   6.638   5.965  -0.142   0.116  C15  R8B   4  
R8B  C14  C3   C  0  1  Y  N  N   5.304  -2.656   5.546   6.043   0.960  -0.755  C14  R8B   5  
R8B  C13  C4   C  0  1  Y  N  N   5.777  -3.914   5.108   4.917   1.589  -1.181  C13  R8B   6  
R8B  C11  C5   C  0  1  Y  N  N   6.870  -4.422   5.841   3.656   1.141  -0.751  C11  R8B   7  
R8B  C10  C6   C  0  1  Y  N  N   7.472  -5.614   5.581   2.474   1.776  -1.177  C10  R8B   8  
R8B  C9   C7   C  0  1  Y  N  N   8.559  -5.995   6.378   1.281   1.291  -0.722  C9   R8B   9  
R8B  C16  C8   C  0  1  Y  N  N   7.010  -2.503   7.354   4.736  -0.609   0.552  C16  R8B  10  
R8B  C12  C9   C  0  1  Y  N  N   7.481  -3.729   7.035   3.561   0.032   0.126  C12  R8B  11  
R8B  N    N1   N  0  1  Y  N  N   8.653  -4.086   7.711   2.361  -0.393   0.535  N    R8B  12  
R8B  C8   C10  C  0  1  Y  N  N   9.109  -5.301   7.403   1.259   0.196   0.140  C8   R8B  13  
R8B  C7   C11  C  0  1  N  N  N  10.279  -5.969   8.030  -0.068  -0.325   0.631  C7   R8B  14  
R8B  O3   O3   O  0  1  N  N  N  10.899  -5.097   9.037  -1.123   0.463   0.077  O3   R8B  15  
R8B  C2   C12  C  0  1  N  N  S  12.005  -5.792   9.627  -2.430   0.051   0.482  C2   R8B  16  
R8B  C1   C13  C  0  1  N  N  S  13.329  -5.516   8.902  -3.368   1.262   0.495  C1   R8B  17  
R8B  O4   O4   O  0  1  N  N  N  13.564  -4.080   8.818  -3.378   1.872  -0.797  O4   R8B  18  
R8B  C3   C14  C  0  1  N  N  R  12.195  -5.409  11.089  -2.969  -0.988  -0.507  C3   R8B  19  
R8B  O2   O5   O  0  1  N  N  N  11.014  -5.776  11.807  -2.142  -2.152  -0.474  O2   R8B  20  
R8B  C4   C15  C  0  1  N  N  R  13.366  -6.235  11.642  -4.399  -1.365  -0.110  C4   R8B  21  
R8B  O1   O6   O  0  1  N  N  N  13.478  -6.047  13.045  -4.928  -2.291  -1.060  O1   R8B  22  
R8B  C6   C16  C  0  1  N  N  N  14.627  -5.383  13.506  -6.222  -2.796  -0.721  C6   R8B  23  
R8B  O    O7   O  0  1  N  N  N  14.556  -5.861  10.943  -5.211  -0.189  -0.087  O    R8B  24  
R8B  C    C17  C  0  1  N  N  R  14.474  -6.296   9.579  -4.783   0.798   0.853  C    R8B  25  
R8B  C5   C18  C  0  1  N  N  N  15.835  -6.030   8.960  -5.738   1.993   0.809  C5   R8B  26  
R8B  O5   O8   O  0  1  N  N  N  16.890  -6.673   9.671  -7.032   1.584   1.255  O5   R8B  27  
R8B  H1   H1   H  0  1  N  N  N   6.292   0.780   8.108   9.184  -0.834   0.458  H1   R8B  28  
R8B  H2   H2   H  0  1  N  N  N   4.462  -2.192   5.055   7.009   1.309  -1.089  H2   R8B  29  
R8B  H3   H3   H  0  1  N  N  N   5.336  -4.445   4.277   4.991   2.434  -1.849  H3   R8B  30  
R8B  H4   H4   H  0  1  N  N  N   7.121  -6.250   4.781   2.510   2.624  -1.845  H4   R8B  31  
R8B  H5   H5   H  0  1  N  N  N   9.009  -6.950   6.150   0.356   1.755  -1.030  H5   R8B  32  
R8B  H6   H6   H  0  1  N  N  N   7.458  -1.928   8.151   4.682  -1.458   1.217  H6   R8B  33  
R8B  H7   H7   H  0  1  N  N  N   9.947  -6.899   8.514  -0.188  -1.363   0.321  H7   R8B  34  
R8B  H8   H8   H  0  1  N  N  N  11.020  -6.205   7.252  -0.102  -0.264   1.719  H8   R8B  35  
R8B  H9   H9   H  0  1  N  N  N  11.816  -6.875   9.582  -2.382  -0.386   1.479  H9   R8B  36  
R8B  H10  H10  H  0  1  N  N  N  13.229  -5.908   7.879  -3.023   1.982   1.236  H10  R8B  37  
R8B  H11  H11  H  0  1  N  N  N  12.824  -3.662   8.393  -3.957   2.644  -0.863  H11  R8B  38  
R8B  H12  H12  H  0  1  N  N  N  12.411  -4.334  11.179  -2.969  -0.568  -1.513  H12  R8B  39  
R8B  H13  H13  H  0  1  N  N  N  11.115  -5.544  12.723  -2.425  -2.853  -1.077  H13  R8B  40  
R8B  H14  H14  H  0  1  N  N  N  13.151  -7.294  11.438  -4.393  -1.822   0.879  H14  R8B  41  
R8B  H15  H15  H  0  1  N  N  N  14.590  -5.303  14.602  -6.170  -3.312   0.237  H15  R8B  42  
R8B  H16  H16  H  0  1  N  N  N  15.522  -5.950  13.210  -6.928  -1.969  -0.651  H16  R8B  43  
R8B  H17  H17  H  0  1  N  N  N  14.669  -4.375  13.067  -6.553  -3.492  -1.492  H17  R8B  44  
R8B  H18  H18  H  0  1  N  N  N  14.254  -7.373   9.529  -4.782   0.370   1.855  H18  R8B  45  
R8B  H19  H19  H  0  1  N  N  N  15.830  -6.400   7.924  -5.362   2.782   1.460  H19  R8B  46  
R8B  H20  H20  H  0  1  N  N  N  16.018  -4.945   8.961  -5.807   2.366  -0.213  H20  R8B  47  
R8B  H21  H21  H  0  1  N  N  N  17.720  -6.480   9.250  -7.690   2.293   1.254  H21  R8B  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R8B  C13  C14  DOUB  Y  N   1  
R8B  C13  C11  SING  Y  N   2  
R8B  C14  C15  SING  Y  N   3  
R8B  C10  C11  DOUB  Y  N   4  
R8B  C10  C9   SING  Y  N   5  
R8B  C11  C12  SING  Y  N   6  
R8B  C9   C8   DOUB  Y  N   7  
R8B  C15  C17  SING  N  N   8  
R8B  C15  C16  DOUB  Y  N   9  
R8B  C12  C16  SING  Y  N  10  
R8B  C12  N    DOUB  Y  N  11  
R8B  C17  O7   DOUB  N  N  12  
R8B  C17  O6   SING  N  N  13  
R8B  C8   N    SING  Y  N  14  
R8B  C8   C7   SING  N  N  15  
R8B  C7   O3   SING  N  N  16  
R8B  O4   C1   SING  N  N  17  
R8B  C1   C    SING  N  N  18  
R8B  C1   C2   SING  N  N  19  
R8B  C5   C    SING  N  N  20  
R8B  C5   O5   SING  N  N  21  
R8B  O3   C2   SING  N  N  22  
R8B  C    O    SING  N  N  23  
R8B  C2   C3   SING  N  N  24  
R8B  O    C4   SING  N  N  25  
R8B  C3   C4   SING  N  N  26  
R8B  C3   O2   SING  N  N  27  
R8B  C4   O1   SING  N  N  28  
R8B  O1   C6   SING  N  N  29  
R8B  O6   H1   SING  N  N  30  
R8B  C14  H2   SING  N  N  31  
R8B  C13  H3   SING  N  N  32  
R8B  C10  H4   SING  N  N  33  
R8B  C9   H5   SING  N  N  34  
R8B  C16  H6   SING  N  N  35  
R8B  C7   H7   SING  N  N  36  
R8B  C7   H8   SING  N  N  37  
R8B  C2   H9   SING  N  N  38  
R8B  C1   H10  SING  N  N  39  
R8B  O4   H11  SING  N  N  40  
R8B  C3   H12  SING  N  N  41  
R8B  O2   H13  SING  N  N  42  
R8B  C4   H14  SING  N  N  43  
R8B  C6   H15  SING  N  N  44  
R8B  C6   H16  SING  N  N  45  
R8B  C6   H17  SING  N  N  46  
R8B  C    H18  SING  N  N  47  
R8B  C5   H19  SING  N  N  48  
R8B  C5   H20  SING  N  N  49  
R8B  O5   H21  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R8B  InChI             InChI                 1.03   "InChI=1S/C18H21NO8/c1-25-18-15(22)16(14(21)13(7-20)27-18)26-8-11-5-4-9-2-3-10(17(23)24)6-12(9)19-11/h2-6,13-16,18,20-22H,7-8H2,1H3,(H,23,24)/t13-,14+,15-,16+,18-/m1/s1"  
R8B  InChIKey          InChI                 1.03   OBYVIVUJQDGTKI-RIUYPTKQSA-N  
R8B  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](OCc2ccc3ccc(cc3n2)C(O)=O)[C@H]1O"  
R8B  SMILES            CACTVS                3.385  "CO[CH]1O[CH](CO)[CH](O)[CH](OCc2ccc3ccc(cc3n2)C(O)=O)[CH]1O"  
R8B  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)OCc2ccc3ccc(cc3n2)C(=O)O)O"  
R8B  SMILES            "OpenEye OEToolkits"  2.0.7  "COC1C(C(C(C(O1)CO)O)OCc2ccc3ccc(cc3n2)C(=O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          R8B
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]quinoline-7-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R8B  "Create component"  2020-09-17  PDBE  
R8B  "Initial release"   2021-07-28  RCSB  
R8B  "Modify name"       2022-02-02  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     R8B
_pdbx_chem_comp_synonyms.name        "2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]quinoline-7-carboxylic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
