data_W0B
# 
_chem_comp.id                                    W0B 
_chem_comp.name                                  "diphenylmethyl (1R,2S,5R)-2-({(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-3-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H35 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        505.605 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W0B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U9K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W0B C10  C1  C 0 1 Y N N N N N -9.721  -20.575 -19.541 3.347  0.965  1.253  C10  W0B 1  
W0B C11  C2  C 0 1 Y N N N N N -10.352 -21.417 -20.452 3.159  2.158  1.925  C11  W0B 2  
W0B C12  C3  C 0 1 N N N N N N -9.808  -17.184 -18.196 1.036  -0.482 -0.361 C12  W0B 3  
W0B C13  C4  C 0 1 N N N N N N -8.213  -16.014 -19.699 0.969  -2.927 -1.055 C13  W0B 4  
W0B C14  C5  C 0 1 N N S N N N -9.269  -14.824 -17.843 -1.066 -1.929 -0.436 C14  W0B 5  
W0B C15  C6  C 0 1 N N N N N N -10.689 -14.352 -18.033 -1.718 -0.940 0.496  C15  W0B 6  
W0B C16  C7  C 0 1 N N S N N N -7.778  -14.562 -19.770 0.225  -4.007 -0.240 C16  W0B 7  
W0B C17  C8  C 0 1 N N S N N N -12.680 -13.262 -17.119 -3.638 0.378  1.211  C17  W0B 8  
W0B C18  C9  C 0 1 N N N N N N -6.820  -14.182 -18.641 -1.075 -4.574 -0.813 C18  W0B 9  
W0B C19  C10 C 0 1 N N N N N N -13.580 -14.009 -16.109 -4.769 1.101  0.477  C19  W0B 10 
W0B C2   C11 C 0 1 N N N N N N -10.434 -19.532 -18.766 3.002  0.862  -0.211 C2   W0B 11 
W0B C20  C12 C 0 1 N N S N N N -13.563 -15.496 -16.415 -4.185 1.935  -0.664 C20  W0B 12 
W0B C21  C13 C 0 1 N N N N N N -14.237 -15.718 -17.764 -3.279 3.056  -0.106 C21  W0B 13 
W0B C22  C14 C 0 1 N N N N N N -15.241 -16.847 -17.540 -3.574 4.216  -1.083 C22  W0B 14 
W0B C23  C15 C 0 1 N N N N N N -5.985  -12.904 -18.782 -1.561 -5.917 -0.264 C23  W0B 15 
W0B C24  C16 C 0 1 N N N N N N -14.384 -16.321 -15.476 -5.284 2.676  -1.395 C24  W0B 16 
W0B C25  C17 C 0 1 N N N N N N -6.281  -15.220 -17.643 -1.359 -4.327 -2.296 C25  W0B 17 
W0B C26  C18 C 0 1 Y N N N N N -9.613  -22.366 -21.166 3.475  2.253  3.267  C26  W0B 18 
W0B C27  C19 C 0 1 Y N N N N N -8.236  -22.463 -20.974 3.978  1.154  3.938  C27  W0B 19 
W0B C28  C20 C 0 1 Y N N N N N -7.600  -21.616 -20.071 4.165  -0.040 3.266  C28  W0B 20 
W0B C29  C21 C 0 1 Y N N N N N -8.342  -20.675 -19.367 3.855  -0.132 1.922  C29  W0B 21 
W0B C3   C22 C 0 1 Y N N N N N -11.845 -19.384 -19.220 4.260  0.983  -1.032 C3   W0B 22 
W0B C34  C23 C 0 1 N N R N N N -8.317  -13.837 -18.539 -1.108 -3.348 0.170  C34  W0B 23 
W0B C4   C24 C 0 1 Y N N N N N -12.818 -20.286 -18.787 4.634  2.211  -1.546 C4   W0B 24 
W0B C5   C25 C 0 1 Y N N N N N -14.137 -20.163 -19.209 5.787  2.323  -2.299 C5   W0B 25 
W0B C6   C26 C 0 1 Y N N N N N -14.498 -19.117 -20.061 6.567  1.206  -2.539 C6   W0B 26 
W0B C7   C27 C 0 1 Y N N N N N -13.533 -18.206 -20.494 6.193  -0.021 -2.026 C7   W0B 27 
W0B C8   C28 C 0 1 N N N N N N -12.623 -11.772 -16.782 -4.208 -0.362 2.423  C8   W0B 28 
W0B C9   C29 C 0 1 Y N N N N N -12.212 -18.336 -20.061 5.042  -0.132 -1.268 C9   W0B 29 
W0B N13  N1  N 0 1 N N N N N N -9.135  -16.089 -18.564 0.392  -1.644 -0.590 N13  W0B 30 
W0B N16  N2  N 0 1 N N N N N N -11.303 -13.743 -17.023 -3.004 -0.583 0.306  N16  W0B 31 
W0B N23  N3  N 0 1 N N N N N N -15.285 -17.057 -16.120 -4.917 3.951  -1.611 N23  W0B 32 
W0B O1   O1  O 0 1 N N N N N N -9.634  -18.367 -19.020 2.376  -0.422 -0.471 O1   W0B 33 
W0B O26  O2  O 0 1 N N N N N N -14.225 -16.334 -14.280 -6.341 2.190  -1.737 O26  W0B 34 
W0B O33  O3  O 0 1 N N N N N N -10.537 -17.244 -17.223 0.406  0.511  -0.056 O33  W0B 35 
W0B O38  O4  O 0 1 N N N N N N -11.247 -14.545 -19.104 -1.087 -0.466 1.416  O38  W0B 36 
W0B O9   O5  O 0 1 N N N N N N -13.882 -11.160 -17.049 -5.259 -1.233 1.999  O9   W0B 37 
W0B H11  H1  H 0 1 N N N N N N -11.418 -21.337 -20.608 2.766  3.017  1.400  H11  W0B 38 
W0B H13  H2  H 0 1 N N N N N N -7.344  -16.668 -19.533 2.038  -2.961 -0.844 H13  W0B 39 
W0B H131 H3  H 0 0 N N N N N N -8.722  -16.309 -20.628 0.788  -3.060 -2.121 H131 W0B 40 
W0B H14  H4  H 0 1 N N N N N N -9.019  -14.927 -16.777 -1.557 -1.915 -1.408 H14  W0B 41 
W0B H16  H5  H 0 1 N N N N N N -7.724  -14.043 -20.739 0.810  -4.604 0.459  H16  W0B 42 
W0B H17  H6  H 0 1 N N N N N N -13.073 -13.400 -18.137 -2.899 1.106  1.545  H17  W0B 43 
W0B H191 H7  H 0 0 N N N N N N -13.204 -13.841 -15.089 -5.466 0.367  0.071  H191 W0B 44 
W0B H19  H8  H 0 1 N N N N N N -14.610 -13.631 -16.187 -5.295 1.754  1.173  H19  W0B 45 
W0B H2   H9  H 0 1 N N N N N N -10.414 -19.785 -17.696 2.314  1.663  -0.479 H2   W0B 46 
W0B H20  H10 H 0 1 N N N N N N -12.527 -15.865 -16.446 -3.627 1.301  -1.353 H20  W0B 47 
W0B H211 H11 H 0 0 N N N N N N -14.754 -14.803 -18.090 -3.567 3.321  0.912  H211 W0B 48 
W0B H21  H12 H 0 1 N N N N N N -13.494 -16.009 -18.521 -2.229 2.767  -0.149 H21  W0B 49 
W0B H221 H13 H 0 0 N N N N N N -16.234 -16.557 -17.915 -3.558 5.169  -0.553 H221 W0B 50 
W0B H22  H14 H 0 1 N N N N N N -14.909 -17.762 -18.052 -2.844 4.222  -1.892 H22  W0B 51 
W0B H232 H15 H 0 0 N N N N N N -4.919  -13.168 -18.854 -0.951 -6.201 0.594  H232 W0B 52 
W0B H231 H16 H 0 0 N N N N N N -6.291  -12.365 -19.691 -2.602 -5.828 0.045  H231 W0B 53 
W0B H23  H17 H 0 1 N N N N N N -6.146  -12.262 -17.903 -1.476 -6.679 -1.039 H23  W0B 54 
W0B H252 H18 H 0 0 N N N N N N -5.207  -15.376 -17.820 -0.627 -4.862 -2.900 H252 W0B 55 
W0B H25  H19 H 0 1 N N N N N N -6.434  -14.856 -16.616 -2.361 -4.683 -2.538 H25  W0B 56 
W0B H251 H20 H 0 0 N N N N N N -6.817  -16.171 -17.778 -1.293 -3.259 -2.505 H251 W0B 57 
W0B H26  H21 H 0 1 N N N N N N -10.109 -23.023 -21.865 3.329  3.186  3.792  H26  W0B 58 
W0B H27  H22 H 0 1 N N N N N N -7.663  -23.194 -21.525 4.225  1.228  4.987  H27  W0B 59 
W0B H28  H23 H 0 1 N N N N N N -6.533  -21.690 -19.918 4.558  -0.898 3.790  H28  W0B 60 
W0B H29  H24 H 0 1 N N N N N N -7.843  -20.012 -18.676 4.001  -1.065 1.398  H29  W0B 61 
W0B H341 H25 H 0 0 N N N N N N -8.624  -12.785 -18.633 -1.546 -3.462 1.161  H341 W0B 62 
W0B H4   H26 H 0 1 N N N N N N -12.544 -21.088 -18.117 4.025  3.083  -1.358 H4   W0B 63 
W0B H5   H27 H 0 1 N N N N N N -14.880 -20.874 -18.879 6.079  3.282  -2.701 H5   W0B 64 
W0B H6   H28 H 0 1 N N N N N N -15.523 -19.013 -20.385 7.467  1.293  -3.129 H6   W0B 65 
W0B H7   H29 H 0 1 N N N N N N -13.807 -17.403 -21.162 6.802  -0.893 -2.213 H7   W0B 66 
W0B H81  H30 H 0 1 N N N N N N -12.378 -11.649 -15.717 -3.419 -0.948 2.895  H81  W0B 67 
W0B H8   H31 H 0 1 N N N N N N -11.847 -11.290 -17.395 -4.601 0.360  3.138  H8   W0B 68 
W0B H9   H32 H 0 1 N N N N N N -11.470 -17.619 -20.380 4.750  -1.091 -0.867 H9   W0B 69 
W0B HN16 H33 H 0 0 N N N N N N -10.805 -13.609 -16.166 -3.509 -0.962 -0.430 HN16 W0B 70 
W0B HN23 H34 H 0 0 N N N N N N -15.920 -17.684 -15.668 -5.469 4.611  -2.059 HN23 W0B 71 
W0B HO9  H35 H 0 1 N N N N N N -13.836 -10.235 -16.837 -5.668 -1.735 2.717  HO9  W0B 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W0B O33 C12  DOUB N N 1  
W0B C12 N13  SING N N 2  
W0B O1  C12  SING N N 3  
W0B N13 C14  SING N N 4  
W0B C13 N13  SING N N 5  
W0B C14 C34  SING N N 6  
W0B C14 C15  SING N N 7  
W0B C34 C18  SING N N 8  
W0B C34 C16  SING N N 9  
W0B C23 C18  SING N N 10 
W0B C25 C18  SING N N 11 
W0B C18 C16  SING N N 12 
W0B C16 C13  SING N N 13 
W0B O38 C15  DOUB N N 14 
W0B C15 N16  SING N N 15 
W0B N16 C17  SING N N 16 
W0B C8  C17  SING N N 17 
W0B C17 C19  SING N N 18 
W0B O9  C8   SING N N 19 
W0B C19 C20  SING N N 20 
W0B C20 C21  SING N N 21 
W0B C20 C24  SING N N 22 
W0B C21 C22  SING N N 23 
W0B C22 N23  SING N N 24 
W0B N23 C24  SING N N 25 
W0B C24 O26  DOUB N N 26 
W0B C2  O1   SING N N 27 
W0B C3  C2   SING N N 28 
W0B C10 C2   SING N N 29 
W0B C3  C4   DOUB Y N 30 
W0B C9  C3   SING Y N 31 
W0B C4  C5   SING Y N 32 
W0B C5  C6   DOUB Y N 33 
W0B C6  C7   SING Y N 34 
W0B C7  C9   DOUB Y N 35 
W0B C10 C11  DOUB Y N 36 
W0B C29 C10  SING Y N 37 
W0B C11 C26  SING Y N 38 
W0B C26 C27  DOUB Y N 39 
W0B C27 C28  SING Y N 40 
W0B C28 C29  DOUB Y N 41 
W0B C11 H11  SING N N 42 
W0B C13 H13  SING N N 43 
W0B C13 H131 SING N N 44 
W0B C14 H14  SING N N 45 
W0B C16 H16  SING N N 46 
W0B C17 H17  SING N N 47 
W0B C19 H191 SING N N 48 
W0B C19 H19  SING N N 49 
W0B C2  H2   SING N N 50 
W0B C20 H20  SING N N 51 
W0B C21 H211 SING N N 52 
W0B C21 H21  SING N N 53 
W0B C22 H221 SING N N 54 
W0B C22 H22  SING N N 55 
W0B C23 H232 SING N N 56 
W0B C23 H231 SING N N 57 
W0B C23 H23  SING N N 58 
W0B C25 H252 SING N N 59 
W0B C25 H25  SING N N 60 
W0B C25 H251 SING N N 61 
W0B C26 H26  SING N N 62 
W0B C27 H27  SING N N 63 
W0B C28 H28  SING N N 64 
W0B C29 H29  SING N N 65 
W0B C34 H341 SING N N 66 
W0B C4  H4   SING N N 67 
W0B C5  H5   SING N N 68 
W0B C6  H6   SING N N 69 
W0B C7  H7   SING N N 70 
W0B C8  H81  SING N N 71 
W0B C8  H8   SING N N 72 
W0B C9  H9   SING N N 73 
W0B N16 HN16 SING N N 74 
W0B N23 HN23 SING N N 75 
W0B O9  HO9  SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W0B SMILES           ACDLabs              12.01 "O=C1NCCC1CC(CO)NC(=O)C1C2C(CN1C(=O)OC(c1ccccc1)c1ccccc1)C2(C)C"                                                                                                                                                        
W0B InChI            InChI                1.06  "InChI=1S/C29H35N3O5/c1-29(2)22-16-32(24(23(22)29)27(35)31-21(17-33)15-20-13-14-30-26(20)34)28(36)37-25(18-9-5-3-6-10-18)19-11-7-4-8-12-19/h3-12,20-25,33H,13-17H2,1-2H3,(H,30,34)(H,31,35)/t20-,21+,22-,23-,24-/m0/s1" 
W0B InChIKey         InChI                1.06  CAVDSRURIWFJKC-HTUFRPJOSA-N                                                                                                                                                                                             
W0B SMILES_CANONICAL CACTVS               3.385 "CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C(=O)OC(c4ccccc4)c5ccccc5"                                                                                                                               
W0B SMILES           CACTVS               3.385 "CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CCNC3=O)C(=O)OC(c4ccccc4)c5ccccc5"                                                                                                                                       
W0B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)OC(c3ccccc3)c4ccccc4)C(=O)N[C@@H](C[C@@H]5CCNC5=O)CO)C"                                                                                                                               
W0B SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)OC(c3ccccc3)c4ccccc4)C(=O)NC(CC5CCNC5=O)CO)C"                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
W0B "SYSTEMATIC NAME" ACDLabs              12.01 "diphenylmethyl (1R,2S,5R)-2-({(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-3-carboxylate"                             
W0B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(diphenylmethyl) (1~{R},2~{S},5~{S})-6,6-dimethyl-2-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3-azabicyclo[3.1.0]hexane-3-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W0B "Create component" 2023-09-21 RCSB 
W0B "Initial release"  2024-09-25 RCSB 
W0B "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            W0B 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
