data_XNB
# 
_chem_comp.id                                    XNB 
_chem_comp.name                                  "N~8~-(cyclopropylmethyl)-N~4~-[2-(methylsulfanyl)phenyl]-2-(piperazin-1-yl)pyrimido[5,4-d]pyrimidine-4,8-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H26 N8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-01-12 
_chem_comp.pdbx_modified_date                    2012-01-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.550 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XNB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3Q92 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XNB C01  C01  C 0 1 N N N -25.661 23.953 59.489 6.281  -3.034 -0.700 C01  XNB 1  
XNB S02  S02  S 0 1 N N N -24.353 24.565 58.378 4.506  -2.778 -0.423 S02  XNB 2  
XNB C03  C03  C 0 1 Y N N -23.629 23.187 57.512 4.411  -1.066 -0.019 C03  XNB 3  
XNB C04  C04  C 0 1 Y N N -22.740 22.278 58.110 5.563  -0.294 0.016  C04  XNB 4  
XNB C05  C05  C 0 1 Y N N -22.202 21.229 57.350 5.485  1.049  0.334  C05  XNB 5  
XNB C06  C06  C 0 1 Y N N -22.580 21.118 56.009 4.262  1.628  0.616  C06  XNB 6  
XNB C07  C07  C 0 1 Y N N -23.479 22.027 55.409 3.108  0.866  0.583  C07  XNB 7  
XNB C08  C08  C 0 1 Y N N -24.039 23.094 56.149 3.175  -0.481 0.260  C08  XNB 8  
XNB N09  N09  N 0 1 N N N -24.960 24.114 55.639 2.008  -1.253 0.226  N09  XNB 9  
XNB C10  C10  C 0 1 Y N N -25.957 23.940 54.638 0.777  -0.640 0.107  C10  XNB 10 
XNB N11  N11  N 0 1 Y N N -25.956 22.783 53.887 0.678  0.666  -0.103 N11  XNB 11 
XNB C12  C12  C 0 1 Y N N -26.970 22.606 52.891 -0.506 1.259  -0.218 C12  XNB 12 
XNB N13  N13  N 0 1 Y N N -27.958 23.561 52.643 -1.653 0.614  -0.133 N13  XNB 13 
XNB C14  C14  C 0 1 Y N N -27.962 24.736 53.393 -1.683 -0.705 0.076  C14  XNB 14 
XNB C15  C15  C 0 1 Y N N -28.993 25.898 53.254 -2.887 -1.442 0.173  C15  XNB 15 
XNB N16  N16  N 0 1 Y N N -28.844 26.966 54.079 -2.804 -2.749 0.382  N16  XNB 16 
XNB C17  C17  C 0 1 Y N N -27.798 27.004 55.014 -1.635 -3.359 0.499  C17  XNB 17 
XNB N18  N18  N 0 1 Y N N -26.868 26.080 55.214 -0.488 -2.723 0.417  N18  XNB 18 
XNB C19  C19  C 0 1 Y N N -26.974 24.949 54.395 -0.463 -1.406 0.202  C19  XNB 19 
XNB N20  N20  N 0 1 N N N -30.036 25.868 52.298 -4.113 -0.819 0.054  N20  XNB 20 
XNB C21  C21  C 0 1 N N N -30.336 24.606 51.598 -5.347 -1.603 0.157  C21  XNB 21 
XNB C22  C22  C 0 1 N N N -30.964 24.285 50.252 -6.554 -0.678 -0.010 C22  XNB 22 
XNB C23  C23  C 0 1 N N N -31.505 22.865 50.014 -7.944 -1.289 0.182  C23  XNB 23 
XNB C24  C24  C 0 1 N N N -30.294 23.328 49.250 -7.460 -0.910 -1.220 C24  XNB 24 
XNB N25  N25  N 0 1 N N N -26.917 21.360 52.146 -0.537 2.626  -0.436 N25  XNB 25 
XNB C26  C26  C 0 1 N N N -27.794 21.142 50.966 -1.330 3.307  0.597  C26  XNB 26 
XNB C27  C27  C 0 1 N N N -27.894 19.724 50.330 -1.406 4.801  0.276  C27  XNB 27 
XNB N28  N28  N 0 1 N N N -26.736 18.833 50.501 -0.046 5.355  0.210  N28  XNB 28 
XNB C29  C29  C 0 1 N N N -26.142 18.881 51.847 0.748  4.674  -0.822 C29  XNB 29 
XNB C30  C30  C 0 1 N N N -25.855 20.323 52.365 0.823  3.180  -0.501 C30  XNB 30 
XNB H01  H01  H 0 1 N N N -26.112 24.800 60.027 6.461  -4.077 -0.961 H01  XNB 31 
XNB H01A H01A H 0 0 N N N -26.434 23.441 58.898 6.618  -2.392 -1.513 H01A XNB 32 
XNB H01B H01B H 0 0 N N N -25.227 23.248 60.213 6.829  -2.787 0.209  H01B XNB 33 
XNB H04  H04  H 0 1 N N N -22.472 22.387 59.151 6.521  -0.743 -0.204 H04  XNB 34 
XNB H05  H05  H 0 1 N N N -21.512 20.524 57.790 6.383  1.648  0.361  H05  XNB 35 
XNB H06  H06  H 0 1 N N N -22.173 20.314 55.414 4.207  2.677  0.864  H06  XNB 36 
XNB H07  H07  H 0 1 N N N -23.743 21.905 54.369 2.154  1.322  0.805  H07  XNB 37 
XNB HN09 HN09 H 0 0 N N N -24.879 25.028 56.036 2.064  -2.220 0.285  HN09 XNB 38 
XNB H17  H17  H 0 1 N N N -27.745 27.883 55.640 -1.623 -4.425 0.669  H17  XNB 39 
XNB HN20 HN20 H 0 0 N N N -30.871 26.125 52.785 -4.158 0.138  -0.099 HN20 XNB 40 
XNB H21  H21  H 0 1 N N N -29.339 24.150 51.504 -5.361 -2.363 -0.624 H21  XNB 41 
XNB H21A H21A H 0 0 N N N -31.023 24.109 52.299 -5.390 -2.084 1.134  H21A XNB 42 
XNB H22  H22  H 0 1 N N N -31.347 25.314 50.190 -6.407 0.351  0.319  H22  XNB 43 
XNB H23  H23  H 0 1 N N N -31.631 22.023 50.710 -7.998 -2.350 0.426  H23  XNB 44 
XNB H23A H23A H 0 0 N N N -32.488 22.526 49.656 -8.711 -0.662 0.636  H23A XNB 45 
XNB H24  H24  H 0 1 N N N -30.128 23.429 48.167 -7.910 -0.034 -1.688 H24  XNB 46 
XNB H24A H24A H 0 0 N N N -29.271 22.926 49.221 -7.196 -1.722 -1.898 H24A XNB 47 
XNB H26  H26  H 0 1 N N N -28.812 21.406 51.288 -2.336 2.888  0.617  H26  XNB 48 
XNB H26A H26A H 0 0 N N N -27.415 21.807 50.176 -0.858 3.167  1.569  H26A XNB 49 
XNB H27  H27  H 0 1 N N N -28.757 19.223 50.793 -1.902 4.942  -0.684 H27  XNB 50 
XNB H27A H27A H 0 0 N N N -28.035 19.865 49.248 -1.969 5.313  1.056  H27A XNB 51 
XNB HN28 HN28 H 0 0 N N N -27.039 17.895 50.329 -0.068 6.351  0.051  HN28 XNB 52 
XNB H29  H29  H 0 1 N N N -26.845 18.404 52.545 0.275  4.814  -1.795 H29  XNB 53 
XNB H29A H29A H 0 0 N N N -25.187 18.335 51.816 1.754  5.093  -0.843 H29A XNB 54 
XNB H30  H30  H 0 1 N N N -24.952 20.676 51.846 1.320  3.038  0.458  H30  XNB 55 
XNB H30A H30A H 0 0 N N N -25.701 20.248 53.452 1.387  2.668  -1.282 H30A XNB 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XNB S02 C01  SING N N 1  
XNB C01 H01  SING N N 2  
XNB C01 H01A SING N N 3  
XNB C01 H01B SING N N 4  
XNB C03 S02  SING N N 5  
XNB C08 C03  DOUB Y N 6  
XNB C03 C04  SING Y N 7  
XNB C05 C04  DOUB Y N 8  
XNB C04 H04  SING N N 9  
XNB C06 C05  SING Y N 10 
XNB C05 H05  SING N N 11 
XNB C07 C06  DOUB Y N 12 
XNB C06 H06  SING N N 13 
XNB C07 C08  SING Y N 14 
XNB C07 H07  SING N N 15 
XNB N09 C08  SING N N 16 
XNB C10 N09  SING N N 17 
XNB N09 HN09 SING N N 18 
XNB N11 C10  DOUB Y N 19 
XNB C19 C10  SING Y N 20 
XNB C12 N11  SING Y N 21 
XNB N25 C12  SING N N 22 
XNB N13 C12  DOUB Y N 23 
XNB N13 C14  SING Y N 24 
XNB C15 C14  DOUB Y N 25 
XNB C14 C19  SING Y N 26 
XNB N20 C15  SING N N 27 
XNB C15 N16  SING Y N 28 
XNB N16 C17  DOUB Y N 29 
XNB C17 N18  SING Y N 30 
XNB C17 H17  SING N N 31 
XNB C19 N18  DOUB Y N 32 
XNB C21 N20  SING N N 33 
XNB N20 HN20 SING N N 34 
XNB C22 C21  SING N N 35 
XNB C21 H21  SING N N 36 
XNB C21 H21A SING N N 37 
XNB C24 C22  SING N N 38 
XNB C23 C22  SING N N 39 
XNB C22 H22  SING N N 40 
XNB C24 C23  SING N N 41 
XNB C23 H23  SING N N 42 
XNB C23 H23A SING N N 43 
XNB C24 H24  SING N N 44 
XNB C24 H24A SING N N 45 
XNB C26 N25  SING N N 46 
XNB N25 C30  SING N N 47 
XNB C27 C26  SING N N 48 
XNB C26 H26  SING N N 49 
XNB C26 H26A SING N N 50 
XNB C27 N28  SING N N 51 
XNB C27 H27  SING N N 52 
XNB C27 H27A SING N N 53 
XNB N28 C29  SING N N 54 
XNB N28 HN28 SING N N 55 
XNB C29 C30  SING N N 56 
XNB C29 H29  SING N N 57 
XNB C29 H29A SING N N 58 
XNB C30 H30  SING N N 59 
XNB C30 H30A SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XNB SMILES           ACDLabs              12.01 "n3c(Nc1ccccc1SC)c5ncnc(NCC2CC2)c5nc3N4CCNCC4"                                                                                                                           
XNB SMILES_CANONICAL CACTVS               3.370 "CSc1ccccc1Nc2nc(nc3c(NCC4CC4)ncnc23)N5CCNCC5"                                                                                                                           
XNB SMILES           CACTVS               3.370 "CSc1ccccc1Nc2nc(nc3c(NCC4CC4)ncnc23)N5CCNCC5"                                                                                                                           
XNB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CSc1ccccc1Nc2c3c(c(ncn3)NCC4CC4)nc(n2)N5CCNCC5"                                                                                                                         
XNB SMILES           "OpenEye OEToolkits" 1.7.0 "CSc1ccccc1Nc2c3c(c(ncn3)NCC4CC4)nc(n2)N5CCNCC5"                                                                                                                         
XNB InChI            InChI                1.03  "InChI=1S/C21H26N8S/c1-30-16-5-3-2-4-15(16)26-20-17-18(19(25-13-24-17)23-12-14-6-7-14)27-21(28-20)29-10-8-22-9-11-29/h2-5,13-14,22H,6-12H2,1H3,(H,23,24,25)(H,26,27,28)" 
XNB InChIKey         InChI                1.03  HFLMLZKGLUEWBU-UHFFFAOYSA-N                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XNB "SYSTEMATIC NAME" ACDLabs              12.01 "N~8~-(cyclopropylmethyl)-N~4~-[2-(methylsulfanyl)phenyl]-2-(piperazin-1-yl)pyrimido[5,4-d]pyrimidine-4,8-diamine" 
XNB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N4-(cyclopropylmethyl)-N8-(2-methylsulfanylphenyl)-6-piperazin-1-yl-pyrimido[5,4-d]pyrimidine-4,8-diamine"        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XNB "Create component"     2011-01-12 RCSB 
XNB "Modify aromatic_flag" 2011-06-04 RCSB 
XNB "Modify descriptor"    2011-06-04 RCSB 
# 
