data_ZQB
# 
_chem_comp.id                                    ZQB 
_chem_comp.name                                  "Pomotrelvir bound form" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H28 Cl N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        457.953 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZQB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TBE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZQB C11 C1  C  0 1 N N N N N N 37.220 1.200  43.032 -0.516 2.594  -0.357 C11 ZQB 1  
ZQB C13 C2  C  0 1 N N N N N N 36.826 1.472  45.578 1.579  4.118  0.008  C13 ZQB 2  
ZQB C15 C3  C  0 1 N N N N N N 36.805 -2.282 41.828 1.732  0.812  1.034  C15 ZQB 3  
ZQB C16 C4  C  0 1 Y N N N N N 37.536 -3.497 42.150 3.097  0.273  0.937  C16 ZQB 4  
ZQB C17 C5  C  0 1 Y N N N N N 37.619 -5.710 42.132 4.902  -0.793 0.145  C17 ZQB 5  
ZQB C18 C6  C  0 1 Y N N N N N 38.713 -5.226 42.882 5.226  -0.249 1.403  C18 ZQB 6  
ZQB C19 C7  C  0 1 Y N N N N N 38.630 -3.812 42.898 4.068  0.414  1.877  C19 ZQB 7  
ZQB C21 C8  C  0 1 Y N N N N N 38.353 -7.945 42.469 7.124  -1.676 -0.022 C21 ZQB 8  
ZQB C22 C9  C  0 1 Y N N N N N 39.412 -7.479 43.214 7.441  -1.137 1.218  C22 ZQB 9  
ZQB C23 C10 C  0 1 Y N N N N N 39.604 -6.144 43.445 6.512  -0.433 1.928  C23 ZQB 10 
ZQB C14 C11 C  0 1 N N N N N N 36.047 0.272  45.126 0.347  4.965  0.336  C14 ZQB 11 
ZQB C1  C12 C  0 1 N N N N N N 36.102 -0.725 37.284 -4.808 -2.232 0.195  C1  ZQB 12 
ZQB C2  C13 C  0 1 N N N N N N 36.481 -2.136 36.857 -5.118 -2.905 1.537  C2  ZQB 13 
ZQB C3  C14 C  0 1 N N N N N N 35.435 -2.617 35.890 -6.627 -2.844 1.779  C3  ZQB 14 
ZQB N1  N1  N  0 1 N N N N N N 34.074 -2.344 36.359 -7.117 -1.483 1.600  N1  ZQB 15 
ZQB C4  C15 C  0 1 N N N N N N 33.686 -1.489 37.303 -6.459 -0.532 0.935  C4  ZQB 16 
ZQB C5  C16 C  0 1 N N S N N N 34.727 -0.646 37.971 -5.102 -0.735 0.325  C5  ZQB 17 
ZQB O1  O1  O  0 1 N N N N N N 32.500 -1.345 37.634 -6.985 0.554  0.816  O1  ZQB 18 
ZQB C6  C17 C  0 1 N N N N N N 34.193 0.774  38.112 -5.065 -0.088 -1.061 C6  ZQB 19 
ZQB C7  C18 C  0 1 N N S N N N 35.179 1.594  38.943 -3.645 -0.169 -1.624 C7  ZQB 20 
ZQB C8  C19 C  0 1 N N N N N N 34.713 3.037  39.096 -3.633 0.363  -3.034 C8  ZQB 21 
ZQB N2  N2  N  0 1 N N N N N N 35.372 0.914  40.220 -2.743 0.632  -0.793 N2  ZQB 22 
ZQB C9  C20 C  0 1 N N N N N N 36.576 0.647  40.706 -1.434 0.320  -0.726 C9  ZQB 23 
ZQB C10 C21 C  0 1 N N S N N N 36.593 0.139  42.145 -0.506 1.144  0.130  C10 ZQB 24 
ZQB N3  N3  N  0 1 N N N N N N 35.070 3.960  38.283 -2.902 1.369  -3.332 N3  ZQB 25 
ZQB O2  O2  O  0 1 N N N N N N 37.615 0.892  40.102 -1.002 -0.623 -1.354 O2  ZQB 26 
ZQB N4  N4  N  0 1 N N N N N N 37.319 -1.111 42.254 0.853  0.606  0.033  N4  ZQB 27 
ZQB C12 C22 C  0 1 N N N N N N 37.307 0.659  44.419 0.327  3.455  0.586  C12 ZQB 28 
ZQB O3  O3  O  0 1 N N N N N N 35.702 -2.377 41.300 1.397  1.445  2.017  O3  ZQB 29 
ZQB N5  N5  N  0 1 Y N N N N N 36.914 -4.635 41.708 3.593  -0.464 -0.120 N5  ZQB 30 
ZQB C20 C23 C  0 1 Y N N N N N 37.443 -7.073 41.921 5.867  -1.508 -0.561 C20 ZQB 31 
ZQB CL1 CL1 CL 0 0 N N N N N N 36.104 -7.693 41.018 5.486  -2.187 -2.112 CL1 ZQB 32 
ZQB H1  H1  H  0 1 N N N N N N 38.227 1.444  42.664 -0.100 2.643  -1.363 H1  ZQB 33 
ZQB H2  H2  H  0 1 N N N N N N 36.597 2.107  43.025 -1.541 2.966  -0.369 H2  ZQB 34 
ZQB H3  H3  H  0 1 N N N N N N 37.372 1.446  46.533 1.801  3.941  -1.045 H3  ZQB 35 
ZQB H4  H4  H  0 1 N N N N N N 36.425 2.483  45.412 2.445  4.214  0.662  H4  ZQB 36 
ZQB H5  H5  H  0 1 N N N N N N 39.296 -3.126 43.399 3.974  0.938  2.816  H5  ZQB 37 
ZQB H6  H6  H  0 1 N N N N N N 38.236 -9.007 42.313 7.871  -2.231 -0.570 H6  ZQB 38 
ZQB H7  H7  H  0 1 N N N N N N 40.113 -8.188 43.629 8.431  -1.278 1.626  H7  ZQB 39 
ZQB H8  H8  H  0 1 N N N N N N 40.430 -5.805 44.052 6.767  -0.018 2.892  H8  ZQB 40 
ZQB H9  H9  H  0 1 N N N N N N 35.075 0.402  44.629 0.404  5.618  1.207  H9  ZQB 41 
ZQB H10 H10 H  0 1 N N N N N N 36.022 -0.634 45.749 -0.240 5.345  -0.500 H10 ZQB 42 
ZQB H11 H11 H  0 1 N N N N N N 36.865 -0.356 37.985 -3.757 -2.379 -0.055 H11 ZQB 43 
ZQB H12 H12 H  0 1 N N N N N N 36.084 -0.083 36.391 -5.435 -2.662 -0.586 H12 ZQB 44 
ZQB H13 H13 H  0 1 N N N N N N 36.512 -2.798 37.735 -4.795 -3.946 1.508  H13 ZQB 45 
ZQB H14 H14 H  0 1 N N N N N N 37.467 -2.128 36.369 -4.595 -2.382 2.338  H14 ZQB 46 
ZQB H15 H15 H  0 1 N N N N N N 35.551 -3.702 35.755 -7.132 -3.504 1.074  H15 ZQB 47 
ZQB H16 H16 H  0 1 N N N N N N 35.585 -2.109 34.926 -6.843 -3.174 2.795  H16 ZQB 48 
ZQB H17 H17 H  0 1 N N N N N N 33.345 -2.865 35.914 -7.976 -1.254 1.989  H17 ZQB 49 
ZQB H18 H18 H  0 1 N N N N N N 34.860 -1.040 38.990 -4.347 -0.272 0.960  H18 ZQB 50 
ZQB H19 H19 H  0 1 N N N N N N 34.083 1.228  37.116 -5.751 -0.613 -1.725 H19 ZQB 51 
ZQB H20 H20 H  0 1 N N N N N N 33.215 0.752  38.615 -5.366 0.957  -0.981 H20 ZQB 52 
ZQB H21 H21 H  0 1 N N N N N N 36.139 1.607  38.405 -3.313 -1.207 -1.625 H21 ZQB 53 
ZQB H22 H22 H  0 1 N N N N N N 34.060 3.290  39.918 -4.242 -0.105 -3.793 H22 ZQB 54 
ZQB H23 H23 H  0 1 N N N N N N 34.567 0.640  40.747 -3.089 1.386  -0.290 H23 ZQB 55 
ZQB H24 H24 H  0 1 N N N N N N 35.553 -0.015 42.469 -0.839 1.106  1.167  H24 ZQB 56 
ZQB H25 H25 H  0 1 N N N N N N 34.676 4.846  38.526 -2.894 1.712  -4.240 H25 ZQB 57 
ZQB H26 H26 H  0 1 N N N N N N 38.233 -1.104 42.659 1.121  0.101  -0.751 H26 ZQB 58 
ZQB H27 H27 H  0 1 N N N N N N 38.177 0.018  44.622 0.370  3.115  1.621  H27 ZQB 59 
ZQB H28 H28 H  0 1 N N N N N N 36.077 -4.666 41.162 3.101  -0.707 -0.920 H28 ZQB 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZQB C3  N1  SING N N 1  
ZQB C3  C2  SING N N 2  
ZQB N1  C4  SING N N 3  
ZQB C2  C1  SING N N 4  
ZQB C1  C5  SING N N 5  
ZQB C4  O1  DOUB N N 6  
ZQB C4  C5  SING N N 7  
ZQB C5  C6  SING N N 8  
ZQB C6  C7  SING N N 9  
ZQB N3  C8  DOUB N N 10 
ZQB C7  C8  SING N N 11 
ZQB C7  N2  SING N N 12 
ZQB O2  C9  DOUB N N 13 
ZQB N2  C9  SING N N 14 
ZQB C9  C10 SING N N 15 
ZQB CL1 C20 SING N N 16 
ZQB O3  C15 DOUB N N 17 
ZQB N5  C17 SING Y N 18 
ZQB N5  C16 SING Y N 19 
ZQB C15 C16 SING N N 20 
ZQB C15 N4  SING N N 21 
ZQB C20 C17 DOUB Y N 22 
ZQB C20 C21 SING Y N 23 
ZQB C17 C18 SING Y N 24 
ZQB C10 N4  SING N N 25 
ZQB C10 C11 SING N N 26 
ZQB C16 C19 DOUB Y N 27 
ZQB C21 C22 DOUB Y N 28 
ZQB C18 C19 SING Y N 29 
ZQB C18 C23 DOUB Y N 30 
ZQB C11 C12 SING N N 31 
ZQB C22 C23 SING Y N 32 
ZQB C12 C14 SING N N 33 
ZQB C12 C13 SING N N 34 
ZQB C14 C13 SING N N 35 
ZQB C11 H1  SING N N 36 
ZQB C11 H2  SING N N 37 
ZQB C13 H3  SING N N 38 
ZQB C13 H4  SING N N 39 
ZQB C19 H5  SING N N 40 
ZQB C21 H6  SING N N 41 
ZQB C22 H7  SING N N 42 
ZQB C23 H8  SING N N 43 
ZQB C14 H9  SING N N 44 
ZQB C14 H10 SING N N 45 
ZQB C1  H11 SING N N 46 
ZQB C1  H12 SING N N 47 
ZQB C2  H13 SING N N 48 
ZQB C2  H14 SING N N 49 
ZQB C3  H15 SING N N 50 
ZQB C3  H16 SING N N 51 
ZQB N1  H17 SING N N 52 
ZQB C5  H18 SING N N 53 
ZQB C6  H19 SING N N 54 
ZQB C6  H20 SING N N 55 
ZQB C7  H21 SING N N 56 
ZQB C8  H22 SING N N 57 
ZQB N2  H23 SING N N 58 
ZQB C10 H24 SING N N 59 
ZQB N3  H25 SING N N 60 
ZQB N4  H26 SING N N 61 
ZQB C12 H27 SING N N 62 
ZQB N5  H28 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZQB SMILES           ACDLabs              12.01 "Clc1cccc2cc([NH]c21)C(=O)NC(CC1CC1)C(=O)NC(CC1CCCNC1=O)C=N"                                                                                                                                                               
ZQB InChI            InChI                1.06  "InChI=1S/C23H28ClN5O3/c24-17-5-1-3-14-11-19(28-20(14)17)23(32)29-18(9-13-6-7-13)22(31)27-16(12-25)10-15-4-2-8-26-21(15)30/h1,3,5,11-13,15-16,18,25,28H,2,4,6-10H2,(H,26,30)(H,27,31)(H,29,32)/b25-12-/t15-,16-,18-/m0/s1" 
ZQB InChIKey         InChI                1.06  IOEBZYOQTDUOBG-UZWGZPNFSA-N                                                                                                                                                                                                
ZQB SMILES_CANONICAL CACTVS               3.385 "Clc1cccc2cc([nH]c12)C(=O)N[C@@H](CC3CC3)C(=O)N[C@@H](C[C@@H]4CCCNC4=O)C=N"                                                                                                                                                
ZQB SMILES           CACTVS               3.385 "Clc1cccc2cc([nH]c12)C(=O)N[CH](CC3CC3)C(=O)N[CH](C[CH]4CCCNC4=O)C=N"                                                                                                                                                      
ZQB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\[C@H](C[C@@H]1CCCNC1=O)NC(=O)[C@H](CC2CC2)NC(=O)c3cc4cccc(c4[nH]3)Cl"                                                                                                                                             
ZQB SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2cc([nH]c2c(c1)Cl)C(=O)NC(CC3CC3)C(=O)NC(CC4CCCNC4=O)C=N"                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZQB "SYSTEMATIC NAME" ACDLabs              12.01 "7-chloro-N-[(2S)-3-cyclopropyl-1-({(1Z,2S)-1-imino-3-[(3S)-2-oxopiperidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]-1H-indole-2-carboxamide"                                           
ZQB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-7-chloranyl-1~{H}-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZQB "Create component" 2023-06-30 RCSB 
ZQB "Initial release"  2023-08-09 RCSB 
ZQB "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            ZQB 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
