data_G8C
# 
_chem_comp.id                                    G8C 
_chem_comp.name                                  1,2-Dioctanoyl-SN-Glycero-3-Phosphoethanolamine 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H42 N O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        467.534 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G8C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7CNY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G8C P   P1  P 0 1 N N N N N N 17.681 30.283 5.110  0.569   2.973  -0.154 P   G8C 1  
G8C N   N1  N 0 1 N N N N N N 20.060 26.103 6.462  3.987   2.218  2.513  N   G8C 2  
G8C O11 O1  O 0 1 N N N N N N 19.122 31.012 5.195  0.007   1.617  -0.816 O11 G8C 3  
G8C O12 O2  O 0 1 N N N N N N 16.910 30.442 6.427  1.459   3.769  -1.233 O12 G8C 4  
G8C O13 O3  O 0 1 N N N N N N 17.978 28.701 5.055  1.475   2.609  1.126  O13 G8C 5  
G8C O14 O4  O 0 1 N N N N N N 16.925 30.469 3.812  -0.567  3.822  0.271  O14 G8C 6  
G8C C11 C1  C 0 1 N N N N N N 19.052 28.258 5.874  2.033   3.599  1.992  C11 G8C 7  
G8C C12 C2  C 0 1 N N N N N N 19.086 26.753 5.635  2.834   2.914  3.101  C12 G8C 8  
G8C C1  C3  C 0 1 N N N N N N 19.769 31.502 4.030  -0.915  1.609  -1.908 C1  G8C 9  
G8C C2  C4  C 0 1 N N R N N N 19.863 33.013 3.998  -1.240  0.163  -2.290 C2  G8C 10 
G8C C3  C5  C 0 1 N N N N N N 18.590 33.749 3.598  0.058   -0.591 -2.582 C3  G8C 11 
G8C O31 O5  O 0 1 N N N N N N 18.824 35.161 3.424  0.950   -0.480 -1.441 O31 G8C 12 
G8C O32 O6  O 0 1 N N N N N N 18.947 35.003 1.160  2.429   -1.700 -2.540 O32 G8C 13 
G8C C31 C6  C 0 1 N N N N N N 18.876 35.775 2.101  2.141   -1.092 -1.536 C31 G8C 14 
G8C C32 C7  C 0 1 N N N N N N 18.877 37.299 1.888  3.118   -1.020 -0.391 C32 G8C 15 
G8C C33 C8  C 0 1 N N N N N N 18.967 37.735 0.414  4.387   -1.795 -0.755 C33 G8C 16 
G8C O21 O7  O 0 1 N N N N N N 20.239 33.445 5.284  -1.939  -0.481 -1.193 O21 G8C 17 
G8C O22 O8  O 0 1 N N N N N N 21.760 34.790 4.373  -3.848  0.198  -2.074 O22 G8C 18 
G8C C21 C9  C 0 1 N N N N N N 21.557 33.978 5.261  -3.278  -0.396 -1.190 C21 G8C 19 
G8C C22 C10 C 0 1 N N N N N N 22.596 33.541 6.271  -4.072  -1.041 -0.083 C22 G8C 20 
G8C C23 C11 C 0 1 N N N N N N 23.068 34.775 7.041  -5.564  -0.797 -0.315 C23 G8C 21 
G8C C24 C12 C 0 1 N N N N N N 24.418 35.278 6.526  -6.369  -1.452 0.809  C24 G8C 22 
G8C C25 C13 C 0 1 N N N N N N 24.508 36.800 6.433  -7.862  -1.208 0.576  C25 G8C 23 
G8C C26 C14 C 0 1 N N N N N N 25.897 37.288 6.831  -8.667  -1.863 1.700  C26 G8C 24 
G8C C27 C15 C 0 1 N N N N N N 26.042 38.801 6.678  -10.159 -1.618 1.467  C27 G8C 25 
G8C H1  H1  H 0 1 N N N N N N 20.052 25.120 6.277  4.532   1.757  3.226  H1  G8C 26 
G8C H2  H2  H 0 1 N N N N N N 20.967 26.473 6.262  3.691   1.563  1.805  H2  G8C 27 
G8C H4  H4  H 0 1 N N N N N N 16.002 30.649 6.240  2.223   3.271  -1.556 H4  G8C 28 
G8C H5  H5  H 0 1 N N N N N N 19.999 28.726 5.567  2.691   4.253  1.419  H5  G8C 29 
G8C H6  H6  H 0 1 N N N N N N 18.858 28.483 6.933  1.230   4.188  2.435  H6  G8C 30 
G8C H7  H7  H 0 1 N N N N N N 18.093 26.335 5.859  2.199   2.194  3.617  H7  G8C 31 
G8C H8  H8  H 0 1 N N N N N N 19.334 26.566 4.580  3.186   3.663  3.811  H8  G8C 32 
G8C H9  H9  H 0 1 N N N N N N 19.204 31.167 3.148  -1.831  2.122  -1.615 H9  G8C 33 
G8C H10 H10 H 0 1 N N N N N N 20.787 31.086 3.993  -0.470  2.119  -2.763 H10 G8C 34 
G8C H11 H11 H 0 1 N N N N N N 20.649 33.287 3.279  -1.872  0.156  -3.178 H11 G8C 35 
G8C H12 H12 H 0 1 N N N N N N 17.834 33.607 4.384  -0.166  -1.642 -2.767 H12 G8C 36 
G8C H13 H13 H 0 1 N N N N N N 18.218 33.330 2.651  0.539   -0.162 -3.461 H13 G8C 37 
G8C H14 H14 H 0 1 N N N N N N 19.739 37.721 2.425  3.372   0.021  -0.195 H14 G8C 38 
G8C H15 H15 H 0 1 N N N N N N 17.947 37.706 2.311  2.667   -1.459 0.499  H15 G8C 39 
G8C H16 H16 H 0 1 N N N N N N 18.369 38.605 0.106  4.133   -2.836 -0.951 H16 G8C 40 
G8C H17 H17 H 0 1 N N N N N N 19.970 37.802 -0.033 4.837   -1.356 -1.645 H17 G8C 41 
G8C H19 H19 H 0 1 N N N N N N 22.154 32.814 6.968  -3.876  -2.113 -0.073 H19 G8C 42 
G8C H20 H20 H 0 1 N N N N N N 23.448 33.079 5.751  -3.778  -0.609 0.874  H20 G8C 43 
G8C H21 H21 H 0 1 N N N N N N 22.322 35.575 6.926  -5.760  0.275  -0.325 H21 G8C 44 
G8C H22 H22 H 0 1 N N N N N N 23.166 34.516 8.105  -5.858  -1.229 -1.272 H22 G8C 45 
G8C H23 H23 H 0 1 N N N N N N 24.586 34.858 5.523  -6.174  -2.524 0.819  H23 G8C 46 
G8C H24 H24 H 0 1 N N N N N N 25.205 34.924 7.209  -6.076  -1.020 1.765  H24 G8C 47 
G8C H25 H25 H 0 1 N N N N N N 24.300 37.111 5.399  -8.057  -0.135 0.566  H25 G8C 48 
G8C H26 H26 H 0 1 N N N N N N 23.762 37.247 7.107  -8.156  -1.640 -0.381 H26 G8C 49 
G8C H27 H27 H 0 1 N N N N N N 26.080 37.019 7.882  -8.472  -2.935 1.710  H27 G8C 50 
G8C H28 H28 H 0 1 N N N N N N 26.643 36.794 6.191  -8.373  -1.431 2.657  H28 G8C 51 
G8C H29 H29 H 0 1 N N N N N N 25.873 39.517 7.496  -10.355 -0.546 1.457  H29 G8C 52 
G8C H30 H30 H 0 1 N N N N N N 26.637 39.281 5.887  -10.453 -2.050 0.510  H30 G8C 53 
G8C C4  C16 C 0 1 N N N N N N ?      ?      ?      -10.965 -2.273 2.591  C4  G8C 54 
G8C C5  C17 C 0 1 N N N N N N ?      ?      ?      5.379   -1.722 0.407  C5  G8C 55 
G8C C6  C18 C 0 1 N N N N N N ?      ?      ?      6.648   -2.496 0.044  C6  G8C 56 
G8C C7  C19 C 0 1 N N N N N N ?      ?      ?      7.640   -2.424 1.206  C7  G8C 57 
G8C C8  C20 C 0 1 N N N N N N ?      ?      ?      8.909   -3.198 0.843  C8  G8C 58 
G8C C9  C21 C 0 1 N N N N N N ?      ?      ?      9.901   -3.125 2.005  C9  G8C 59 
G8C H3  H3  H 0 1 N N N N N N ?      ?      ?      -12.028 -2.099 2.425  H3  G8C 60 
G8C H18 H18 H 0 1 N N N N N N ?      ?      ?      -10.769 -3.346 2.601  H18 G8C 61 
G8C H31 H31 H 0 1 N N N N N N ?      ?      ?      -10.671 -1.842 3.548  H31 G8C 62 
G8C H32 H32 H 0 1 N N N N N N ?      ?      ?      5.633   -0.680 0.604  H32 G8C 63 
G8C H33 H33 H 0 1 N N N N N N ?      ?      ?      4.928   -2.160 1.298  H33 G8C 64 
G8C H34 H34 H 0 1 N N N N N N ?      ?      ?      6.394   -3.538 -0.153 H34 G8C 65 
G8C H35 H35 H 0 1 N N N N N N ?      ?      ?      7.098   -2.058 -0.846 H35 G8C 66 
G8C H36 H36 H 0 1 N N N N N N ?      ?      ?      7.894   -1.382 1.403  H36 G8C 67 
G8C H37 H37 H 0 1 N N N N N N ?      ?      ?      7.189   -2.862 2.097  H37 G8C 68 
G8C H38 H38 H 0 1 N N N N N N ?      ?      ?      8.655   -4.240 0.646  H38 G8C 69 
G8C H39 H39 H 0 1 N N N N N N ?      ?      ?      9.359   -2.760 -0.048 H39 G8C 70 
G8C H40 H40 H 0 1 N N N N N N ?      ?      ?      10.805  -3.677 1.746  H40 G8C 71 
G8C H41 H41 H 0 1 N N N N N N ?      ?      ?      10.155  -2.084 2.201  H41 G8C 72 
G8C H42 H42 H 0 1 N N N N N N ?      ?      ?      9.450   -3.563 2.895  H42 G8C 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G8C C33 C32 SING N N 1  
G8C O32 C31 DOUB N N 2  
G8C C32 C31 SING N N 3  
G8C C31 O31 SING N N 4  
G8C O31 C3  SING N N 5  
G8C C3  C2  SING N N 6  
G8C O14 P   DOUB N N 7  
G8C C2  C1  SING N N 8  
G8C C2  O21 SING N N 9  
G8C C1  O11 SING N N 10 
G8C O22 C21 DOUB N N 11 
G8C O13 P   SING N N 12 
G8C O13 C11 SING N N 13 
G8C P   O11 SING N N 14 
G8C P   O12 SING N N 15 
G8C C21 O21 SING N N 16 
G8C C21 C22 SING N N 17 
G8C C12 C11 SING N N 18 
G8C C12 N   SING N N 19 
G8C C22 C23 SING N N 20 
G8C C25 C24 SING N N 21 
G8C C25 C26 SING N N 22 
G8C C24 C23 SING N N 23 
G8C C27 C26 SING N N 24 
G8C N   H1  SING N N 25 
G8C N   H2  SING N N 26 
G8C O12 H4  SING N N 27 
G8C C11 H5  SING N N 28 
G8C C11 H6  SING N N 29 
G8C C12 H7  SING N N 30 
G8C C12 H8  SING N N 31 
G8C C1  H9  SING N N 32 
G8C C1  H10 SING N N 33 
G8C C2  H11 SING N N 34 
G8C C3  H12 SING N N 35 
G8C C3  H13 SING N N 36 
G8C C32 H14 SING N N 37 
G8C C32 H15 SING N N 38 
G8C C33 H16 SING N N 39 
G8C C33 H17 SING N N 40 
G8C C22 H19 SING N N 41 
G8C C22 H20 SING N N 42 
G8C C23 H21 SING N N 43 
G8C C23 H22 SING N N 44 
G8C C24 H23 SING N N 45 
G8C C24 H24 SING N N 46 
G8C C25 H25 SING N N 47 
G8C C25 H26 SING N N 48 
G8C C26 H27 SING N N 49 
G8C C26 H28 SING N N 50 
G8C C27 H29 SING N N 51 
G8C C27 H30 SING N N 52 
G8C C27 C4  SING N N 53 
G8C C33 C5  SING N N 54 
G8C C5  C6  SING N N 55 
G8C C6  C7  SING N N 56 
G8C C7  C8  SING N N 57 
G8C C8  C9  SING N N 58 
G8C C4  H3  SING N N 59 
G8C C4  H18 SING N N 60 
G8C C4  H31 SING N N 61 
G8C C5  H32 SING N N 62 
G8C C5  H33 SING N N 63 
G8C C6  H34 SING N N 64 
G8C C6  H35 SING N N 65 
G8C C7  H36 SING N N 66 
G8C C7  H37 SING N N 67 
G8C C8  H38 SING N N 68 
G8C C8  H39 SING N N 69 
G8C C9  H40 SING N N 70 
G8C C9  H41 SING N N 71 
G8C C9  H42 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G8C InChI            InChI                1.03  "InChI=1S/C21H42NO8P/c1-3-5-7-9-11-13-20(23)27-17-19(18-29-31(25,26)28-16-15-22)30-21(24)14-12-10-8-6-4-2/h19H,3-18,22H2,1-2H3,(H,25,26)/t19-/m1/s1" 
G8C InChIKey         InChI                1.03  UNACBKDVIYEXSL-LJQANCHMSA-N                                                                                                                          
G8C SMILES_CANONICAL CACTVS               3.385 "CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)OCCN)OC(=O)CCCCCCC"                                                                                                 
G8C SMILES           CACTVS               3.385 "CCCCCCCC(=O)OC[CH](CO[P](O)(=O)OCCN)OC(=O)CCCCCCC"                                                                                                  
G8C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC(=O)CCCCCCC"                                                                                                   
G8C SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCC(=O)OCC(COP(=O)(O)OCCN)OC(=O)CCCCCCC"                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           G8C 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-octanoyloxy-propyl] octanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G8C "Create component" 2020-08-05 PDBJ 
G8C "Initial release"  2021-03-24 RCSB 
G8C "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            G8C 
_pdbx_chem_comp_pcm.modified_residue_id                PYR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               N 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   CA 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
