data_K1C
# 
_chem_comp.id                                    K1C 
_chem_comp.name                                  "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]purin-6-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H24 F2 N10 O9 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-16 
_chem_comp.pdbx_modified_date                    2023-11-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        660.421 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K1C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZV0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K1C C21  C1  C 0 1 N N R N N N 32.559 37.771 1.487  -4.927  0.318  0.836  C21  K1C 1  
K1C O23  O1  O 0 1 N N N N N N 32.237 35.230 -1.066 -1.765  -0.917 1.673  O23  K1C 2  
K1C C18  C2  C 0 1 Y N N N N N 37.676 35.051 -2.245 5.367   -0.976 -1.381 C18  K1C 3  
K1C N17  N1  N 0 1 Y N N N N N 38.399 36.148 -2.248 6.354   -1.508 -2.041 N17  K1C 4  
K1C C25  C3  C 0 1 N N N N N N 32.820 34.215 1.947  -1.887  2.119  0.229  C25  K1C 5  
K1C C24  C4  C 0 1 N N R N N N 32.190 35.459 1.361  -2.782  1.216  1.078  C24  K1C 6  
K1C C33  C5  C 0 1 N N R N N N 35.950 32.854 -0.030 2.760   1.204  0.171  C33  K1C 7  
K1C O35  O2  O 0 1 N N N N N N 34.247 34.177 -2.171 0.806   -1.469 1.612  O35  K1C 8  
K1C C8   C6  C 0 1 Y N N N N N 34.939 37.655 2.366  -5.818  1.095  -1.393 C8   K1C 9  
K1C C4   C7  C 0 1 Y N N N N N 34.405 39.482 1.290  -7.081  -0.354 -0.312 C4   K1C 10 
K1C C5   C8  C 0 1 Y N N N N N 35.718 39.520 1.723  -7.686  0.002  -1.529 C5   K1C 11 
K1C C6   C9  C 0 1 Y N N N N N 36.436 40.679 1.403  -8.921  -0.585 -1.852 C6   K1C 12 
K1C C2   C10 C 0 1 Y N N N N N 34.555 41.492 0.360  -8.849  -1.750 0.139  C2   K1C 13 
K1C C36  C11 C 0 1 N N N N N N 36.480 32.345 -2.303 4.036   -0.549 1.363  C36  K1C 14 
K1C C12  C12 C 0 1 Y N N N N N 41.542 34.509 -0.335 9.437   -0.366 0.261  C12  K1C 15 
K1C C14  C13 C 0 1 Y N N N N N 39.512 34.436 -1.231 7.204   -0.465 -0.273 C14  K1C 16 
K1C C15  C14 C 0 1 Y N N N N N 39.567 35.766 -1.605 7.520   -1.229 -1.409 C15  K1C 17 
K1C C16  C15 C 0 1 Y N N N N N 40.745 36.448 -1.277 8.871   -1.531 -1.650 C16  K1C 18 
K1C C22  C16 C 0 1 N N R N N N 32.314 37.365 0.036  -3.973  -0.868 0.636  C22  K1C 19 
K1C C23  C17 C 0 1 N N R N N N 32.800 35.930 0.051  -2.560  -0.255 0.689  C23  K1C 20 
K1C C31  C18 C 0 1 N N R N N N 37.755 32.623 -1.478 5.037   0.406  0.705  C31  K1C 21 
K1C C32  C19 C 0 1 N N S N N N 37.359 32.313 -0.041 4.251   1.522  0.011  C32  K1C 22 
K1C C34  C20 C 0 1 N N R N N N 35.347 32.204 -1.268 2.635   0.041  1.159  C34  K1C 23 
K1C C35  C21 C 0 1 N N N N N N 34.046 32.817 -1.737 1.701   -1.028 0.590  C35  K1C 24 
K1C F22  F1  F 0 1 N N N N N N 30.939 37.387 -0.218 -4.136  -1.803 1.663  F22  K1C 25 
K1C F32  F2  F 0 1 N N N N N N 37.324 30.926 0.133  4.542   2.751  0.611  F32  K1C 26 
K1C N1   N2  N 0 1 Y N N N N N 35.833 41.670 0.711  -9.457  -1.446 -0.994 N1   K1C 27 
K1C N11  N3  N 0 1 Y N N N N N 41.738 35.798 -0.633 9.783   -1.081 -0.794 N11  K1C 28 
K1C N13  N4  N 0 1 Y N N N N N 40.471 33.748 -0.591 8.185   -0.058 0.526  N13  K1C 29 
K1C N16  N5  N 0 1 N N N N N N 40.909 37.738 -1.591 9.244   -2.280 -2.753 N16  K1C 30 
K1C N19  N6  N 0 1 Y N N N N N 38.291 33.980 -1.649 5.839   -0.322 -0.282 N19  K1C 31 
K1C N3   N7  N 0 1 Y N N N N N 33.765 40.440 0.603  -7.695  -1.222 0.485  N3   K1C 32 
K1C N6   N8  N 0 1 N N N N N N 37.714 40.827 1.769  -9.565  -0.273 -3.037 N6   K1C 33 
K1C N7   N9  N 0 1 Y N N N N N 36.049 38.358 2.404  -6.861  0.885  -2.142 N7   K1C 34 
K1C N9   N10 N 0 1 Y N N N N N 33.908 38.279 1.712  -5.907  0.354  -0.253 N9   K1C 35 
K1C O24  O3  O 0 1 N N N N N N 32.396 36.582 2.252  -4.158  1.522  0.832  O24  K1C 36 
K1C O25  O4  O 0 1 N N N N N N 34.231 34.439 2.140  -0.526  1.951  0.631  O25  K1C 37 
K1C O33  O5  O 0 1 N N N N N N 35.273 32.370 1.138  2.073   2.348  0.679  O33  K1C 38 
K1C P25  P1  P 0 1 N N N N N N 35.217 33.237 2.467  0.674   2.871  0.076  P25  K1C 39 
K1C P35  P2  P 0 1 N N N N N N 33.019 35.145 -2.446 -0.669  -2.038 1.304  P35  K1C 40 
K1C O25A O6  O 0 0 N N N N N N 34.645 32.408 3.578  0.433   4.398  0.528  O25A K1C 41 
K1C O25B O7  O 0 0 N N N N N N 36.582 33.783 2.762  0.713   2.793  -1.401 O25B K1C 42 
K1C O35A O8  O 0 0 N N N N N N 33.535 36.506 -2.809 -0.785  -2.409 -0.258 O35A K1C 43 
K1C O35B O9  O 0 0 N N N N N N 32.128 34.540 -3.489 -0.910  -3.250 2.118  O35B K1C 44 
K1C H1   H1  H 0 1 N N N N N N 31.816 38.527 1.782  -5.443  0.215  1.791  H1   K1C 45 
K1C H2   H2  H 0 1 N N N N N N 36.686 34.998 -2.674 4.326   -1.040 -1.664 H2   K1C 46 
K1C H3   H3  H 0 1 N N N N N N 32.349 33.986 2.914  -1.991  1.849  -0.822 H3   K1C 47 
K1C H4   H4  H 0 1 N N N N N N 32.673 33.370 1.258  -2.182  3.159  0.369  H4   K1C 48 
K1C H5   H5  H 0 1 N N N N N N 31.114 35.285 1.215  -2.557  1.357  2.134  H5   K1C 49 
K1C H6   H6  H 0 1 N N N N N N 35.937 33.951 -0.106 2.342   0.916  -0.793 H6   K1C 50 
K1C H7   H7  H 0 1 N N N N N N 34.847 36.675 2.810  -5.001  1.757  -1.640 H7   K1C 51 
K1C H8   H8  H 0 1 N N N N N N 34.102 42.303 -0.191 -9.322  -2.452 0.810  H8   K1C 52 
K1C H9   H9  H 0 1 N N N N N N 36.274 33.181 -2.988 4.097   -1.530 0.892  H9   K1C 53 
K1C H10  H10 H 0 1 N N N N N N 36.591 31.416 -2.882 4.251   -0.634 2.428  H10  K1C 54 
K1C H11  H11 H 0 1 N N N N N N 42.354 34.018 0.180  10.210  -0.020 0.931  H11  K1C 55 
K1C H12  H12 H 0 1 N N N N N N 32.899 37.984 -0.660 -4.147  -1.335 -0.333 H12  K1C 56 
K1C H13  H13 H 0 1 N N N N N N 33.898 35.877 0.077  -2.084  -0.319 -0.290 H13  K1C 57 
K1C H14  H14 H 0 1 N N N N N N 38.522 31.897 -1.786 5.691   0.834  1.465  H14  K1C 58 
K1C H15  H15 H 0 1 N N N N N N 38.005 32.834 0.681  4.511   1.555  -1.047 H15  K1C 59 
K1C H16  H16 H 0 1 N N N N N N 35.187 31.135 -1.066 2.249   0.404  2.110  H16  K1C 60 
K1C H17  H17 H 0 1 N N N N N N 33.323 32.806 -0.908 2.290   -1.872 0.232  H17  K1C 61 
K1C H18  H18 H 0 1 N N N N N N 33.651 32.226 -2.576 1.129   -0.607 -0.237 H18  K1C 62 
K1C H19  H19 H 0 1 N N N N N N 41.807 38.046 -1.278 8.569   -2.603 -3.370 H19  K1C 63 
K1C H20  H20 H 0 1 N N N N N N 40.845 37.850 -2.583 10.180  -2.482 -2.908 H20  K1C 64 
K1C H21  H21 H 0 1 N N N N N N 38.052 41.713 1.451  -9.164  0.357  -3.655 H21  K1C 65 
K1C H22  H22 H 0 1 N N N N N N 37.783 40.782 2.766  -10.417 -0.685 -3.249 H22  K1C 66 
K1C H23  H23 H 0 1 N N N N N N 35.264 32.371 4.297  -0.394  4.778  0.200  H23  K1C 67 
K1C H24  H24 H 0 1 N N N N N N 33.198 36.756 -3.661 -0.154  -3.080 -0.551 H24  K1C 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K1C O35B P35  DOUB N N 1  
K1C O35A P35  SING N N 2  
K1C P35  O35  SING N N 3  
K1C P35  O23  SING N N 4  
K1C C36  C31  SING N N 5  
K1C C36  C34  SING N N 6  
K1C N17  C18  DOUB Y N 7  
K1C N17  C15  SING Y N 8  
K1C C18  N19  SING Y N 9  
K1C O35  C35  SING N N 10 
K1C C35  C34  SING N N 11 
K1C N19  C31  SING N N 12 
K1C N19  C14  SING Y N 13 
K1C C15  C16  DOUB Y N 14 
K1C C15  C14  SING Y N 15 
K1C N16  C16  SING N N 16 
K1C C31  C32  SING N N 17 
K1C C16  N11  SING Y N 18 
K1C C34  C33  SING N N 19 
K1C C14  N13  DOUB Y N 20 
K1C O23  C23  SING N N 21 
K1C N11  C12  DOUB Y N 22 
K1C N13  C12  SING Y N 23 
K1C F22  C22  SING N N 24 
K1C C32  C33  SING N N 25 
K1C C32  F32  SING N N 26 
K1C C33  O33  SING N N 27 
K1C C22  C23  SING N N 28 
K1C C22  C21  SING N N 29 
K1C C23  C24  SING N N 30 
K1C C2   N3   DOUB Y N 31 
K1C C2   N1   SING Y N 32 
K1C N3   C4   SING Y N 33 
K1C N1   C6   DOUB Y N 34 
K1C O33  P25  SING N N 35 
K1C C4   N9   SING Y N 36 
K1C C4   C5   DOUB Y N 37 
K1C C24  C25  SING N N 38 
K1C C24  O24  SING N N 39 
K1C C6   C5   SING Y N 40 
K1C C6   N6   SING N N 41 
K1C C21  N9   SING N N 42 
K1C C21  O24  SING N N 43 
K1C N9   C8   SING Y N 44 
K1C C5   N7   SING Y N 45 
K1C C25  O25  SING N N 46 
K1C O25  P25  SING N N 47 
K1C C8   N7   DOUB Y N 48 
K1C P25  O25B DOUB N N 49 
K1C P25  O25A SING N N 50 
K1C C21  H1   SING N N 51 
K1C C18  H2   SING N N 52 
K1C C25  H3   SING N N 53 
K1C C25  H4   SING N N 54 
K1C C24  H5   SING N N 55 
K1C C33  H6   SING N N 56 
K1C C8   H7   SING N N 57 
K1C C2   H8   SING N N 58 
K1C C36  H9   SING N N 59 
K1C C36  H10  SING N N 60 
K1C C12  H11  SING N N 61 
K1C C22  H12  SING N N 62 
K1C C23  H13  SING N N 63 
K1C C31  H14  SING N N 64 
K1C C32  H15  SING N N 65 
K1C C34  H16  SING N N 66 
K1C C35  H17  SING N N 67 
K1C C35  H18  SING N N 68 
K1C N16  H19  SING N N 69 
K1C N16  H20  SING N N 70 
K1C N6   H21  SING N N 71 
K1C N6   H22  SING N N 72 
K1C O25A H23  SING N N 73 
K1C O35A H24  SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K1C InChI            InChI                1.06  "InChI=1S/C21H24F2N10O9P2/c22-11-9(32-6-30-13-17(24)26-4-28-19(13)32)1-8-2-38-43(34,35)42-16-10(3-39-44(36,37)41-15(8)11)40-21(12(16)23)33-7-31-14-18(25)27-5-29-20(14)33/h4-12,15-16,21H,1-3H2,(H,34,35)(H,36,37)(H2,24,26,28)(H2,25,27,29)/t8-,9-,10-,11+,12-,15-,16-,21-/m1/s1" 
K1C InChIKey         InChI                1.06  VVYHCAAXASVXER-PBMJJGOWSA-N                                                                                                                                                                                                                                                        
K1C SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3C[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7c(N)ncnc67"                                                                                                                                                            
K1C SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3C[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]4[CH]3F)n6cnc7c(N)ncnc67"                                                                                                                                                                         
K1C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@@H]4COP(=O)(O[C@@H]5[C@@H](COP(=O)(O[C@H]4[C@H]3F)O)O[C@H]([C@@H]5F)n6cnc7c6ncnc7N)O)N"                                                                                                                                                              
K1C SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3CC4COP(=O)(OC5C(COP(=O)(OC4C3F)O)OC(C5F)n6cnc7c6ncnc7N)O)N"                                                                                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           K1C 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]purin-6-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K1C "Create component"  2022-05-16 PDBE 
K1C "Modify descriptor" 2022-08-22 RCSB 
K1C "Initial release"   2023-11-22 RCSB 
# 
