data_Y8C
# 
_chem_comp.id                                    Y8C 
_chem_comp.name                                  "N~2~-(3-chlorophenyl)-N-[(3R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]glycinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H21 Cl N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-11 
_chem_comp.pdbx_modified_date                    2023-02-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        384.863 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y8C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FLG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y8C N1  N1  N  0 1 Y N N 18.114 -4.688 0.090   6.635  -2.145 0.383  N1  Y8C 1  
Y8C N3  N2  N  0 1 Y N N 17.359 -4.912 -2.195  8.009  -0.105 0.763  N3  Y8C 2  
Y8C C4  C1  C  0 1 Y N N 19.137 -5.026 0.871   5.417  -2.575 0.136  C4  Y8C 3  
Y8C C5  C2  C  0 1 Y N N 19.094 -6.050 -3.059  6.385  1.396  0.570  C5  Y8C 4  
Y8C C6  C3  C  0 1 Y N N 17.886 -5.480 -3.331  7.698  1.229  0.794  C6  Y8C 5  
Y8C C7  C4  C  0 1 N N N 21.672 -7.669 -2.226  2.221  -0.349 -0.292 C7  Y8C 6  
Y8C C8  C5  C  0 1 N N R 22.914 -7.226 -3.015  1.025  0.606  -0.294 C8  Y8C 7  
Y8C C10 C6  C  0 1 N N N 23.898 -6.393 -0.842  2.547  2.416  -1.090 C10 Y8C 8  
Y8C C13 C7  C  0 1 N N N 22.925 -8.929 -6.423  -2.651 -0.449 -0.462 C13 Y8C 9  
Y8C C15 C8  C  0 1 Y N N 23.304 -6.716 -8.231  -6.183 0.407  0.477  C15 Y8C 10 
Y8C C17 C9  C  0 1 Y N N 22.778 -5.653 -10.338 -7.634 -1.311 -0.349 C17 Y8C 11 
Y8C C1  C10 C  0 1 Y N N 20.390 -6.112 -0.743  4.534  -0.443 0.117  C1  Y8C 12 
Y8C C11 C11 C  0 1 N N N 22.666 -6.888 -0.132  3.699  1.409  -1.065 C11 Y8C 13 
Y8C C12 C12 C  0 1 N N N 22.428 -8.038 -5.301  -1.392 0.322  -0.163 C12 Y8C 14 
Y8C C14 C13 C  0 1 Y N N 22.375 -7.711 -8.512  -5.089 -0.265 -0.053 C14 Y8C 15 
Y8C C16 C14 C  0 1 Y N N 23.482 -5.703 -9.154  -7.452 -0.118 0.330  C16 Y8C 16 
Y8C C18 C15 C  0 1 Y N N 21.861 -6.640 -10.602 -6.548 -1.979 -0.883 C18 Y8C 17 
Y8C C19 C16 C  0 1 Y N N 21.657 -7.670 -9.703  -5.276 -1.461 -0.734 C19 Y8C 18 
Y8C C2  C17 C  0 1 Y N N 19.349 -5.824 -1.676  5.816  0.063  0.381  C2  Y8C 19 
Y8C C3  C18 C  0 1 Y N N 18.244 -5.110 -1.173  6.884  -0.843 0.513  C3  Y8C 20 
Y8C C9  C19 C  0 1 N N N 24.148 -7.200 -2.117  1.235  1.677  -1.368 C9  Y8C 21 
Y8C N2  N3  N  0 1 Y N N 20.238 -5.709 0.523   4.386  -1.760 0.004  N2  Y8C 22 
Y8C N4  N4  N  0 1 N N N 21.511 -6.834 -1.034  3.451  0.407  -0.021 N4  Y8C 23 
Y8C N5  N5  N  0 1 N N N 23.139 -8.082 -4.175  -0.200 -0.144 -0.584 N5  Y8C 24 
Y8C N6  N6  N  0 1 N N N 22.166 -8.731 -7.633  -3.804 0.261  0.098  N6  Y8C 25 
Y8C O1  O1  O  0 1 N N N 21.429 -7.340 -5.436  -1.451 1.363  0.456  O1  Y8C 26 
Y8C CL1 CL1 CL 0 0 N N N 24.641 -4.453 -8.805  -8.820 0.717  0.997  CL1 Y8C 27 
Y8C H1  H1  H  0 1 N N N 16.481 -4.437 -2.128  8.897  -0.473 0.897  H1  Y8C 28 
Y8C H2  H2  H  0 1 N N N 19.074 -4.715 1.903   5.253  -3.637 0.037  H2  Y8C 29 
Y8C H3  H3  H  0 1 N N N 19.733 -6.571 -3.756  5.851  2.334  0.536  H3  Y8C 30 
Y8C H4  H4  H  0 1 N N N 17.411 -5.475 -4.301  8.404  2.027  0.973  H4  Y8C 31 
Y8C H5  H5  H  0 1 N N N 20.781 -7.569 -2.863  2.081  -1.104 0.482  H5  Y8C 32 
Y8C H6  H6  H  0 1 N N N 21.790 -8.719 -1.922  2.299  -0.835 -1.264 H6  Y8C 33 
Y8C H7  H7  H  0 1 N N N 22.735 -6.199 -3.367  0.937  1.082  0.683  H7  Y8C 34 
Y8C H8  H8  H  0 1 N N N 24.766 -6.496 -0.174  2.483  2.921  -0.126 H8  Y8C 35 
Y8C H9  H9  H  0 1 N N N 23.762 -5.334 -1.106  2.724  3.152  -1.875 H9  Y8C 36 
Y8C H10 H10 H  0 1 N N N 22.833 -9.980 -6.112  -2.772 -0.544 -1.541 H10 Y8C 37 
Y8C H11 H11 H  0 1 N N N 23.982 -8.697 -6.622  -2.584 -1.441 -0.015 H11 Y8C 38 
Y8C H12 H12 H  0 1 N N N 23.873 -6.734 -7.313  -6.041 1.337  1.007  H12 Y8C 39 
Y8C H13 H13 H  0 1 N N N 22.945 -4.853 -11.044 -8.627 -1.720 -0.463 H13 Y8C 40 
Y8C H14 H14 H  0 1 N N N 22.472 -6.254 0.746   3.770  0.915  -2.034 H14 Y8C 41 
Y8C H15 H15 H  0 1 N N N 22.826 -7.927 0.193   4.632  1.930  -0.853 H15 Y8C 42 
Y8C H16 H16 H  0 1 N N N 21.294 -6.611 -11.521 -6.693 -2.909 -1.412 H16 Y8C 43 
Y8C H17 H17 H  0 1 N N N 20.938 -8.445 -9.926  -4.428 -1.984 -1.151 H17 Y8C 44 
Y8C H18 H18 H  0 1 N N N 24.411 -8.232 -1.841  1.283  1.205  -2.349 H18 Y8C 45 
Y8C H19 H19 H  0 1 N N N 24.983 -6.745 -2.670  0.406  2.385  -1.344 H19 Y8C 46 
Y8C H20 H20 H  0 1 N N N 23.881 -8.750 -4.121  -0.152 -0.977 -1.080 H20 Y8C 47 
Y8C H21 H21 H  0 1 N N N 21.213 -8.646 -7.343  -3.674 1.096  0.573  H21 Y8C 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y8C C18 C17 DOUB Y N 1  
Y8C C18 C19 SING Y N 2  
Y8C C17 C16 SING Y N 3  
Y8C C19 C14 DOUB Y N 4  
Y8C C16 CL1 SING N N 5  
Y8C C16 C15 DOUB Y N 6  
Y8C C14 C15 SING Y N 7  
Y8C C14 N6  SING N N 8  
Y8C N6  C13 SING N N 9  
Y8C C13 C12 SING N N 10 
Y8C O1  C12 DOUB N N 11 
Y8C C12 N5  SING N N 12 
Y8C N5  C8  SING N N 13 
Y8C C6  C5  DOUB Y N 14 
Y8C C6  N3  SING Y N 15 
Y8C C5  C2  SING Y N 16 
Y8C C8  C7  SING N N 17 
Y8C C8  C9  SING N N 18 
Y8C C7  N4  SING N N 19 
Y8C N3  C3  SING Y N 20 
Y8C C9  C10 SING N N 21 
Y8C C2  C3  DOUB Y N 22 
Y8C C2  C1  SING Y N 23 
Y8C C3  N1  SING Y N 24 
Y8C N4  C1  SING N N 25 
Y8C N4  C11 SING N N 26 
Y8C C10 C11 SING N N 27 
Y8C C1  N2  DOUB Y N 28 
Y8C N1  C4  DOUB Y N 29 
Y8C N2  C4  SING Y N 30 
Y8C N3  H1  SING N N 31 
Y8C C4  H2  SING N N 32 
Y8C C5  H3  SING N N 33 
Y8C C6  H4  SING N N 34 
Y8C C7  H5  SING N N 35 
Y8C C7  H6  SING N N 36 
Y8C C8  H7  SING N N 37 
Y8C C10 H8  SING N N 38 
Y8C C10 H9  SING N N 39 
Y8C C13 H10 SING N N 40 
Y8C C13 H11 SING N N 41 
Y8C C15 H12 SING N N 42 
Y8C C17 H13 SING N N 43 
Y8C C11 H14 SING N N 44 
Y8C C11 H15 SING N N 45 
Y8C C18 H16 SING N N 46 
Y8C C19 H17 SING N N 47 
Y8C C9  H18 SING N N 48 
Y8C C9  H19 SING N N 49 
Y8C N5  H20 SING N N 50 
Y8C N6  H21 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y8C SMILES           ACDLabs              12.01 "Clc1cccc(c1)NCC(=O)NC1CCCN(C1)c1ncnc2[NH]ccc12"                                                                                                                                  
Y8C InChI            InChI                1.06  "InChI=1S/C19H21ClN6O/c20-13-3-1-4-14(9-13)22-10-17(27)25-15-5-2-8-26(11-15)19-16-6-7-21-18(16)23-12-24-19/h1,3-4,6-7,9,12,15,22H,2,5,8,10-11H2,(H,25,27)(H,21,23,24)/t15-/m1/s1" 
Y8C InChIKey         InChI                1.06  SPSNKQVUYDXOGY-OAHLLOKOSA-N                                                                                                                                                       
Y8C SMILES_CANONICAL CACTVS               3.385 "Clc1cccc(NCC(=O)N[C@@H]2CCCN(C2)c3ncnc4[nH]ccc34)c1"                                                                                                                             
Y8C SMILES           CACTVS               3.385 "Clc1cccc(NCC(=O)N[CH]2CCCN(C2)c3ncnc4[nH]ccc34)c1"                                                                                                                               
Y8C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)NCC(=O)N[C@@H]2CCCN(C2)c3c4cc[nH]c4ncn3"                                                                                                                           
Y8C SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)NCC(=O)NC2CCCN(C2)c3c4cc[nH]c4ncn3"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y8C "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-(3-chlorophenyl)-N-[(3R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]glycinamide"             
Y8C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(3-chlorophenyl)amino]-~{N}-[(3~{R})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y8C "Create component" 2023-01-11 RCSB 
Y8C "Initial release"  2023-03-01 RCSB 
# 
