data_28D
# 
_chem_comp.id                                    28D 
_chem_comp.name                                  "(2Z)-2-(1H-1,2,4-triazol-1-yl)-3-[3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl]prop-2-enenitrile" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H18 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-09-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        402.406 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     28D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4MAO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
28D C01  C01  C 0 1 N N N N N N 3.771  10.848 -19.973 -4.196 -1.480 -0.646 C01  28D 1  
28D C02  C02  C 0 1 N N N N N N 2.810  11.924 -19.601 -4.866 -2.671 -1.075 C02  28D 2  
28D N03  N03  N 0 1 N N N N N N 2.096  12.754 -19.291 -5.397 -3.616 -1.416 N03  28D 3  
28D N04  N04  N 0 1 Y N N N N N 3.110  9.871  -20.815 -4.902 -0.495 0.057  N04  28D 4  
28D C05  C05  C 0 1 Y N N N N N 3.238  8.485  -20.676 -6.020 0.140  -0.344 C05  28D 5  
28D N06  N06  N 0 1 Y N N N N N 2.493  7.918  -21.651 -6.366 0.984  0.594  N06  28D 6  
28D C07  C07  C 0 1 Y N N N N N 1.924  8.940  -22.387 -5.498 0.919  1.603  C07  28D 7  
28D N08  N08  N 0 1 Y N N N N N 2.319  10.150 -21.854 -4.587 0.023  1.324  N08  28D 8  
28D C09  C09  C 0 1 N N N N N N 4.992  11.417 -20.653 -2.880 -1.309 -0.915 C09  28D 9  
28D C10  C10  C 0 1 Y N N N N N 6.004  10.320 -20.634 -2.230 -0.023 -0.618 C10  28D 10 
28D C11  C11  C 0 1 Y N N N N N 6.495  9.895  -19.399 -2.997 1.152  -0.552 C11  28D 11 
28D C12  C12  C 0 1 Y N N N N N 7.432  8.857  -19.334 -2.409 2.349  -0.278 C12  28D 12 
28D C13  C13  C 0 1 Y N N N N N 7.852  8.264  -20.518 -1.033 2.422  -0.059 C13  28D 13 
28D N14  N14  N 0 1 Y N N N N N 8.755  7.240  -20.767 -0.180 3.455  0.229  N14  28D 14 
28D N15  N15  N 0 1 Y N N N N N 8.870  6.966  -22.049 1.123  2.960  0.349  N15  28D 15 
28D C16  C16  C 0 1 Y N N N N N 8.044  7.818  -22.680 1.130  1.665  0.150  C16  28D 16 
28D C17  C17  C 0 1 Y N N N N N 7.826  7.878  -24.179 2.318  0.779  0.191  C17  28D 17 
28D C18  C18  C 0 1 Y N N N N N 6.447  8.135  -24.695 3.552  1.245  -0.260 C18  28D 18 
28D C19  C19  C 0 1 Y N N N N N 6.225  8.186  -26.053 4.660  0.416  -0.220 C19  28D 19 
28D O20  O20  O 0 1 N N N N N N 4.944  8.423  -26.497 5.864  0.870  -0.660 O20  28D 20 
28D C21  C21  C 0 1 N N N N N N 4.668  9.677  -27.018 5.912  2.211  -1.150 C21  28D 21 
28D C22  C22  C 0 1 Y N N N N N 7.369  7.994  -27.023 4.543  -0.880 0.270  C22  28D 22 
28D O23  O23  O 0 1 N N N N N N 7.109  8.050  -28.388 5.632  -1.695 0.304  O23  28D 23 
28D C24  C24  C 0 1 N N N N N N 6.492  6.972  -29.024 5.878  -2.497 -0.852 C24  28D 24 
28D C25  C25  C 0 1 Y N N N N N 8.640  7.761  -26.533 3.312  -1.347 0.721  C25  28D 25 
28D O26  O26  O 0 1 N N N N N N 9.731  7.561  -27.357 3.200  -2.614 1.200  O26  28D 26 
28D C27  C27  C 0 1 N N N N N N 10.792 8.428  -27.285 1.906  -3.027 1.646  C27  28D 27 
28D C28  C28  C 0 1 Y N N N N N 8.872  7.698  -25.039 2.203  -0.519 0.687  C28  28D 28 
28D C29  C29  C 0 1 Y N N N N N 7.340  8.694  -21.755 -0.252 1.252  -0.122 C29  28D 29 
28D C30  C30  C 0 1 Y N N N N N 6.410  9.723  -21.832 -0.856 0.027  -0.398 C30  28D 30 
28D H051 H051 H 0 0 N N N N N N 3.822  7.966  -19.930 -6.540 -0.020 -1.277 H051 28D 31 
28D H071 H071 H 0 0 N N N N N N 1.275  8.812  -23.241 -5.545 1.506  2.509  H071 28D 32 
28D H091 H091 H 0 0 N N N N N N 5.109  12.408 -21.066 -2.307 -2.116 -1.347 H091 28D 33 
28D H111 H111 H 0 0 N N N N N N 6.151  10.368 -18.491 -4.063 1.105  -0.719 H111 28D 34 
28D H121 H121 H 0 0 N N N N N N 7.820  8.524  -18.383 -3.010 3.245  -0.230 H121 28D 35 
28D H141 H141 H 0 0 N N N N N N 9.263  6.762  -20.050 -0.438 4.384  0.333  H141 28D 36 
28D H181 H181 H 0 0 N N N N N N 5.628  8.280  -24.006 3.644  2.251  -0.641 H181 28D 37 
28D H213 H213 H 0 0 N N N N N N 3.614  9.721  -27.330 6.928  2.445  -1.468 H213 28D 38 
28D H211 H211 H 0 0 N N N N N N 4.855  10.442 -26.250 5.234  2.313  -1.997 H211 28D 39 
28D H212 H212 H 0 0 N N N N N N 5.316  9.863  -27.887 5.612  2.898  -0.358 H212 28D 40 
28D H243 H243 H 0 0 N N N N N N 6.370  7.198  -30.094 6.774  -3.098 -0.693 H243 28D 41 
28D H241 H241 H 0 0 N N N N N N 7.115  6.073  -28.908 5.027  -3.154 -1.027 H241 28D 42 
28D H242 H242 H 0 0 N N N N N N 5.505  6.796  -28.572 6.023  -1.851 -1.718 H242 28D 43 
28D H273 H273 H 0 0 N N N N N N 11.566 8.122  -28.004 1.577  -2.377 2.457  H273 28D 44 
28D H272 H272 H 0 0 N N N N N N 10.451 9.446  -27.525 1.199  -2.963 0.819  H272 28D 45 
28D H271 H271 H 0 0 N N N N N N 11.210 8.412  -26.268 1.956  -4.056 2.002  H271 28D 46 
28D H281 H281 H 0 0 N N N N N N 9.863  7.511  -24.653 1.248  -0.881 1.037  H281 28D 47 
28D H301 H301 H 0 0 N N N N N N 6.015  10.050 -22.782 -0.263 -0.875 -0.442 H301 28D 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
28D C24 O23  SING N N 1  
28D O23 C22  SING N N 2  
28D O26 C27  SING N N 3  
28D O26 C25  SING N N 4  
28D C22 C25  DOUB Y N 5  
28D C22 C19  SING Y N 6  
28D C21 O20  SING N N 7  
28D C25 C28  SING Y N 8  
28D O20 C19  SING N N 9  
28D C19 C18  DOUB Y N 10 
28D C28 C17  DOUB Y N 11 
28D C18 C17  SING Y N 12 
28D C17 C16  SING N N 13 
28D C16 N15  DOUB Y N 14 
28D C16 C29  SING Y N 15 
28D C07 N08  DOUB Y N 16 
28D C07 N06  SING Y N 17 
28D N15 N14  SING Y N 18 
28D N08 N04  SING Y N 19 
28D C30 C29  DOUB Y N 20 
28D C30 C10  SING Y N 21 
28D C29 C13  SING Y N 22 
28D N06 C05  DOUB Y N 23 
28D N04 C05  SING Y N 24 
28D N04 C01  SING N N 25 
28D N14 C13  SING Y N 26 
28D C09 C10  SING N N 27 
28D C09 C01  DOUB N Z 28 
28D C10 C11  DOUB Y N 29 
28D C13 C12  DOUB Y N 30 
28D C01 C02  SING N N 31 
28D C02 N03  TRIP N N 32 
28D C11 C12  SING Y N 33 
28D C05 H051 SING N N 34 
28D C07 H071 SING N N 35 
28D C09 H091 SING N N 36 
28D C11 H111 SING N N 37 
28D C12 H121 SING N N 38 
28D N14 H141 SING N N 39 
28D C18 H181 SING N N 40 
28D C21 H213 SING N N 41 
28D C21 H211 SING N N 42 
28D C21 H212 SING N N 43 
28D C24 H243 SING N N 44 
28D C24 H241 SING N N 45 
28D C24 H242 SING N N 46 
28D C27 H273 SING N N 47 
28D C27 H272 SING N N 48 
28D C27 H271 SING N N 49 
28D C28 H281 SING N N 50 
28D C30 H301 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
28D SMILES           ACDLabs              12.01 "N#C/C(n1ncnc1)=C/c2cc3c(cc2)nnc3c4cc(OC)c(OC)c(OC)c4"                                                                                          
28D InChI            InChI                1.03  "InChI=1S/C21H18N6O3/c1-28-18-8-14(9-19(29-2)21(18)30-3)20-16-7-13(4-5-17(16)25-26-20)6-15(10-22)27-12-23-11-24-27/h4-9,11-12H,1-3H3,(H,25,26)" 
28D InChIKey         InChI                1.03  KVQZHZNPPJMLLH-UHFFFAOYSA-N                                                                                                                     
28D SMILES_CANONICAL CACTVS               3.385 "COc1cc(cc(OC)c1OC)c2n[nH]c3ccc(\C=C(\C#N)n4cncn4)cc23"                                                                                         
28D SMILES           CACTVS               3.385 "COc1cc(cc(OC)c1OC)c2n[nH]c3ccc(C=C(C#N)n4cncn4)cc23"                                                                                           
28D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COc1cc(cc(c1OC)OC)c2c3cc(ccc3[nH]n2)C=C(C#N)n4cncn4"                                                                                           
28D SMILES           "OpenEye OEToolkits" 1.7.6 "COc1cc(cc(c1OC)OC)c2c3cc(ccc3[nH]n2)C=C(C#N)n4cncn4"                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
28D "SYSTEMATIC NAME" ACDLabs              12.01 "(2Z)-2-(1H-1,2,4-triazol-1-yl)-3-[3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl]prop-2-enenitrile" 
28D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-(1,2,4-triazol-1-yl)-3-[3-(3,4,5-trimethoxyphenyl)-1H-indazol-5-yl]prop-2-enenitrile"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
28D "Create component" 2013-09-09 RCSB 
28D "Initial release"  2014-10-22 RCSB 
28D "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            28D 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C09 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
