data_42D
#

_chem_comp.id                                   42D
_chem_comp.name                                 "3,5-dideoxy-5-[(methoxycarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H19 N O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "3,5-dideoxy-5-[(methoxycarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosonic acid; 3,5-dideoxy-5-[(methoxycarbonyl)amino]-D-glycero-D-galacto-non-2-ulosonic acid; 3,5-dideoxy-5-[(methoxycarbonyl)amino]-D-glycero-galacto-non-2-ulosonic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-04-27
_chem_comp.pdbx_modified_date                   2020-10-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       325.269
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    42D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2WGU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  42D  "3,5-dideoxy-5-[(methoxycarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosonic acid"  PDB  ?  
2  42D  "3,5-dideoxy-5-[(methoxycarbonyl)amino]-D-glycero-D-galacto-non-2-ulosonic acid"        PDB  ?  
3  42D  "3,5-dideoxy-5-[(methoxycarbonyl)amino]-D-glycero-galacto-non-2-ulosonic acid"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
42D  O1B   O3    O  0  1  N  N  N  57.026  45.344  69.265   0.656   1.992  -1.821  O1B   42D   1  
42D  C1    C1    C  0  1  N  N  N  57.006  45.756  68.089   1.482   2.440  -0.862  C1    42D   2  
42D  O1A   O1    O  0  1  N  N  N  57.975  45.603  67.346   2.432   3.127  -1.155  O1A   42D   3  
42D  C2    C2    C  0  1  N  N  R  55.766  46.443  67.570   1.225   2.085   0.580  C2    42D   4  
42D  O2    O2    O  0  1  N  Y  N  56.030  47.847  67.459   2.164   2.767   1.413  O2    42D   5  
42D  C3    C3    C  0  1  N  N  N  55.330  45.885  66.197  -0.197   2.503   0.963  C3    42D   6  
42D  C4    C4    C  0  1  N  N  S  54.743  44.472  66.271  -1.199   1.723   0.106  C4    42D   7  
42D  O4    O4    O  0  1  N  N  N  54.241  44.084  64.982  -2.530   2.053   0.507  O4    42D   8  
42D  O6    O6    O  0  1  N  N  N  54.713  46.254  68.524   1.369   0.674   0.756  O6    42D   9  
42D  C6    C6    C  0  1  N  N  R  54.239  44.897  68.650   0.491  -0.108  -0.055  C6    42D  10  
42D  C7    C7    C  0  1  N  N  R  53.269  44.827  69.823   0.752  -1.595   0.196  C7    42D  11  
42D  C8    C8    C  0  1  N  N  R  53.867  45.410  71.099   2.233  -1.899  -0.041  C8    42D  12  
42D  C9    C9    C  0  1  N  N  N  52.991  45.064  72.297   2.495  -3.385   0.210  C9    42D  13  
42D  O9    O9    O  0  1  N  N  N  53.325  43.752  72.767   3.896  -3.647   0.104  O9    42D  14  
42D  O8    O8    O  0  1  N  N  N  55.201  44.921  71.310   2.577  -1.576  -1.390  O8    42D  15  
42D  O7    O7    O  0  1  N  N  N  52.127  45.592  69.460   0.409  -1.918   1.544  O7    42D  16  
42D  C5    C5    C  0  1  N  N  R  53.628  44.462  67.316  -0.961   0.222   0.302  C5    42D  17  
42D  N5    N5    N  0  1  N  N  N  53.095  43.103  67.476  -1.864  -0.534  -0.569  N5    42D  18  
42D  C10   C10   C  0  1  N  N  N  51.852  42.784  67.073  -3.119  -0.811  -0.161  C10   42D  19  
42D  O10   O10   O  0  1  N  N  N  51.115  43.581  66.541  -3.501  -0.434   0.928  O10   42D  20  
42D  O11   O11   O  0  1  N  N  N  51.331  41.444  67.229  -3.949  -1.506  -0.962  O11   42D  21  
42D  C22   C22   C  0  1  N  N  N  50.131  41.047  66.556  -5.285  -1.768  -0.458  C22   42D  22  
42D  HO1B  H3    H  0  0  N  N  N  57.863  44.931  69.442   0.862   2.246  -2.731  HO1B  42D  23  
42D  HO2   H2    H  0  1  N  Y  N  56.088  48.228  68.327   3.087   2.550   1.227  HO2   42D  24  
42D  H32   H31C  H  0  1  N  N  N  54.561  46.554  65.783  -0.370   2.283   2.016  H32   42D  25  
42D  H31   H32C  H  0  1  N  N  N  56.229  45.832  65.566  -0.322   3.572   0.787  H31   42D  26  
42D  H4    H4    H  0  1  N  N  N  55.520  43.751  66.563  -1.059   1.981  -0.944  H4    42D  27  
42D  HO4   HA    H  0  1  N  Y  N  53.296  43.998  65.022  -2.747   2.991   0.416  HO4   42D  28  
42D  H5    H5    H  0  1  N  N  N  52.816  45.135  67.001  -1.150  -0.043   1.342  H5    42D  29  
42D  H6    H6    H  0  1  N  N  N  55.055  44.193  68.868   0.667   0.120  -1.106  H6    42D  30  
42D  H7    H7    H  0  1  N  N  N  53.023  43.775  70.028   0.146  -2.191  -0.487  H7    42D  31  
42D  H8    H8    H  0  1  N  N  N  53.911  46.504  70.988   2.840  -1.303   0.641  H8    42D  32  
42D  HO7   HB    H  0  1  N  Y  N  51.601  45.763  70.232   0.911  -1.424   2.207  HO7   42D  33  
42D  H92   H91C  H  0  1  N  N  N  53.161  45.796  73.100   2.151  -3.651   1.209  H92   42D  34  
42D  H91   H92C  H  0  1  N  N  N  51.933  45.089  71.998   1.957  -3.979  -0.529  H91   42D  35  
42D  HO8   HC    H  0  1  N  Y  N  55.635  44.813  70.472   2.075  -2.069  -2.052  HO8   42D  36  
42D  HO9   H9    H  0  1  N  Y  N  53.399  43.160  72.028   4.136  -4.572   0.251  HO9   42D  37  
42D  HN5   HD    H  0  1  N  N  N  53.669  42.399  67.894  -1.559  -0.836  -1.439  HN5   42D  38  
42D  H221  H221  H  0  0  N  N  N  49.316  40.945  67.288  -5.791  -0.823  -0.262  H221  42D  39  
42D  H222  H222  H  0  0  N  N  N  49.860  41.808  65.810  -5.848  -2.335  -1.199  H222  42D  40  
42D  H223  H223  H  0  0  N  N  N  50.295  40.082  66.053  -5.219  -2.343   0.465  H223  42D  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
42D  O1B  C1    SING  N  N   1  
42D  C1   O1A   DOUB  N  N   2  
42D  C1   C2    SING  N  N   3  
42D  C2   O2    SING  N  N   4  
42D  C2   C3    SING  N  N   5  
42D  C2   O6    SING  N  N   6  
42D  C3   C4    SING  N  N   7  
42D  C4   O4    SING  N  N   8  
42D  C4   C5    SING  N  N   9  
42D  O6   C6    SING  N  N  10  
42D  C6   C7    SING  N  N  11  
42D  C6   C5    SING  N  N  12  
42D  C7   C8    SING  N  N  13  
42D  C7   O7    SING  N  N  14  
42D  C8   C9    SING  N  N  15  
42D  C8   O8    SING  N  N  16  
42D  C9   O9    SING  N  N  17  
42D  C5   N5    SING  N  N  18  
42D  N5   C10   SING  N  N  19  
42D  C10  O10   DOUB  N  N  20  
42D  C10  O11   SING  N  N  21  
42D  O11  C22   SING  N  N  22  
42D  O1B  HO1B  SING  N  N  23  
42D  O2   HO2   SING  N  N  24  
42D  C3   H32   SING  N  N  25  
42D  C3   H31   SING  N  N  26  
42D  C4   H4    SING  N  N  27  
42D  O4   HO4   SING  N  N  28  
42D  C5   H5    SING  N  N  29  
42D  C6   H6    SING  N  N  30  
42D  C7   H7    SING  N  N  31  
42D  C8   H8    SING  N  N  32  
42D  O7   HO7   SING  N  N  33  
42D  C9   H92   SING  N  N  34  
42D  C9   H91   SING  N  N  35  
42D  O8   HO8   SING  N  N  36  
42D  O9   HO9   SING  N  N  37  
42D  N5   HN5   SING  N  N  38  
42D  C22  H221  SING  N  N  39  
42D  C22  H222  SING  N  N  40  
42D  C22  H223  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
42D  SMILES            ACDLabs               10.04  "O=C(O)C1(O)OC(C(O)C(O)CO)C(NC(=O)OC)C(O)C1"  
42D  SMILES_CANONICAL  CACTVS                3.352  "COC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O"  
42D  SMILES            CACTVS                3.352  "COC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O"  
42D  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "COC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O)O"  
42D  SMILES            "OpenEye OEToolkits"  1.6.1  "COC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)O)O"  
42D  InChI             InChI                 1.03   "InChI=1S/C11H19NO10/c1-21-10(19)12-6-4(14)2-11(20,9(17)18)22-8(6)7(16)5(15)3-13/h4-8,13-16,20H,2-3H2,1H3,(H,12,19)(H,17,18)/t4-,5+,6+,7+,8+,11+/m0/s1"  
42D  InChIKey          InChI                 1.03   CBSUGMQOJBEHIX-HSASFHKOSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
42D  "SYSTEMATIC NAME"  ACDLabs               10.04  "3,5-dideoxy-5-[(methoxycarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid"  
42D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(2R,4S,5R,6R)-2,4-dihydroxy-5-(methoxycarbonylamino)-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
42D  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
42D  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
42D  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
42D  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
42D  "Create component"          2009-04-27  EBI   
42D  "Modify descriptor"         2011-06-04  RCSB  
42D  "Other modification"        2020-07-03  RCSB  
42D  "Modify synonyms"           2020-07-17  RCSB  
42D  "Modify internal type"      2020-07-17  RCSB  
42D  "Modify linking type"       2020-07-17  RCSB  
42D  "Modify atom id"            2020-07-17  RCSB  
42D  "Modify component atom id"  2020-07-17  RCSB  
42D  "Modify leaving atom flag"  2020-07-17  RCSB  
42D  "Modify synonyms"           2020-10-19  RCSB  
##
