data_5VD
# 
_chem_comp.id                                    5VD 
_chem_comp.name                                  "methyl (1~{R},2~{R},4~{S})-2-methyl-2,4,5,7,10-pentakis(oxidanyl)-6,11-bis(oxidanylidene)-3,4-dihydro-1~{H}-tetracene-1-carboxylate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H18 O9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-12-09 
_chem_comp.pdbx_modified_date                    2016-12-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        414.362 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5VD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5F5N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5VD C1  C1  C 0 1 Y N N -13.839 15.741 -29.607 4.758  0.777  0.233  C1  5VD 1  
5VD C2  C2  C 0 1 Y N N -13.786 16.397 -30.825 5.789  -0.159 0.177  C2  5VD 2  
5VD O14 O1  O 0 1 N N N -20.348 14.163 -24.012 -5.442 0.144  -0.412 O14 5VD 3  
5VD C3  C3  C 0 1 Y N N -14.935 16.610 -31.580 5.512  -1.491 -0.036 C3  5VD 4  
5VD C8  C4  C 0 1 Y N N -16.704 13.360 -26.122 -0.107 1.820  0.021  C8  5VD 5  
5VD C4  C5  C 0 1 Y N N -16.181 16.129 -31.217 4.196  -1.922 -0.199 C4  5VD 6  
5VD C5  C6  C 0 1 Y N N -19.027 13.887 -27.791 -0.662 -0.861 -0.422 C5  5VD 7  
5VD C6  C7  C 0 1 Y N N -19.172 13.228 -26.585 -1.701 0.064  -0.362 C6  5VD 8  
5VD C7  C8  C 0 1 Y N N -18.029 12.931 -25.713 -1.429 1.394  -0.140 C7  5VD 9  
5VD C10 C9  C 0 1 N N N -19.570 11.839 -24.096 -3.812 1.921  -0.660 C10 5VD 10 
5VD CG  C10 C 0 1 N N N -15.230 14.500 -27.825 2.336  1.347  0.133  CG  5VD 11 
5VD CD1 C11 C 0 1 Y N N -16.570 14.046 -27.407 0.941  0.902  -0.037 CD1 5VD 12 
5VD CE1 C12 C 0 1 Y N N -17.784 14.285 -28.227 0.656  -0.458 -0.261 CE1 5VD 13 
5VD CZ  C13 C 0 1 N N N -17.674 14.966 -29.524 1.756  -1.444 -0.318 CZ  5VD 14 
5VD CE2 C14 C 0 1 Y N N -16.335 15.428 -29.941 3.149  -0.999 -0.147 CE2 5VD 15 
5VD CD2 C15 C 0 1 Y N N -15.127 15.210 -29.117 3.433  0.365  0.071  CD2 5VD 16 
5VD C9  C16 C 0 1 N N S -18.148 12.281 -24.406 -2.511 2.439  -0.050 C9  5VD 17 
5VD C11 C17 C 0 1 N N R -20.599 12.854 -24.585 -4.126 0.554  -0.036 C11 5VD 18 
5VD C12 C18 C 0 1 N N R -20.520 12.885 -26.129 -3.103 -0.455 -0.552 C12 5VD 19 
5VD O16 O2  O 0 1 N N N -14.227 14.266 -27.108 2.582  2.522  0.325  O16 5VD 20 
5VD O17 O3  O 0 1 N N N -18.689 15.159 -30.240 1.510  -2.620 -0.505 O17 5VD 21 
5VD O18 O4  O 0 1 N N N -12.730 15.573 -28.857 5.040  2.086  0.449  O18 5VD 22 
5VD O19 O5  O 0 1 N N N -17.270 16.339 -31.979 3.933  -3.236 -0.409 O19 5VD 23 
5VD C13 C19 C 0 1 N N N -21.996 12.454 -24.103 -4.032 0.651  1.488  C13 5VD 24 
5VD C14 C20 C 0 1 N N N -21.157 11.784 -26.830 -3.260 -1.751 0.201  C14 5VD 25 
5VD O20 O6  O 0 1 N N N -20.620 10.719 -27.014 -2.662 -1.924 1.236  O20 5VD 26 
5VD O21 O7  O 0 1 N N N -22.466 12.118 -27.298 -4.065 -2.713 -0.278 O21 5VD 27 
5VD C22 C21 C 0 1 N N N -23.201 11.089 -27.948 -4.168 -3.934 0.501  C22 5VD 28 
5VD O1  O8  O 0 1 N N N -17.792 13.329 -23.495 -2.094 3.610  -0.754 O1  5VD 29 
5VD O2  O9  O 0 1 N N N -15.636 13.108 -25.347 0.157  3.133  0.235  O2  5VD 30 
5VD H1  H1  H 0 1 N N N -12.835 16.750 -31.196 6.812  0.162  0.302  H1  5VD 31 
5VD H2  H2  H 0 1 N N N -20.404 14.111 -23.065 -6.140 0.747  -0.123 H2  5VD 32 
5VD H3  H3  H 0 1 N N N -14.851 17.179 -32.494 6.319  -2.207 -0.078 H3  5VD 33 
5VD H4  H4  H 0 1 N N N -19.897 14.092 -28.397 -0.884 -1.904 -0.594 H4  5VD 34 
5VD H5  H5  H 0 1 N N N -19.677 11.720 -23.008 -4.622 2.618  -0.445 H5  5VD 35 
5VD H6  H6  H 0 1 N N N -19.759 10.875 -24.590 -3.695 1.816  -1.739 H6  5VD 36 
5VD H7  H7  H 0 1 N N N -17.459 11.427 -24.326 -2.681 2.691  0.997  H7  5VD 37 
5VD H8  H8  H 0 1 N N N -21.126 13.763 -26.397 -3.279 -0.634 -1.613 H8  5VD 38 
5VD H9  H9  H 0 1 N N N -12.950 15.087 -28.071 5.056  2.336  1.383  H9  5VD 39 
5VD H10 H10 H 0 1 N N N -18.034 15.973 -31.549 3.790  -3.743 0.402  H10 5VD 40 
5VD H11 H11 H 0 1 N N N -22.016 12.442 -23.003 -4.655 1.474  1.839  H11 5VD 41 
5VD H12 H12 H 0 1 N N N -22.734 13.180 -24.475 -4.378 -0.282 1.933  H12 5VD 42 
5VD H13 H13 H 0 1 N N N -22.243 11.452 -24.485 -2.997 0.830  1.778  H13 5VD 43 
5VD H14 H14 H 0 1 N N N -24.183 11.477 -28.255 -4.550 -3.701 1.494  H14 5VD 44 
5VD H15 H15 H 0 1 N N N -22.648 10.748 -28.835 -4.848 -4.626 0.003  H15 5VD 45 
5VD H16 H16 H 0 1 N N N -23.341 10.245 -27.256 -3.183 -4.393 0.589  H16 5VD 46 
5VD H17 H17 H 0 1 N N N -17.839 13.004 -22.604 -2.766 4.305  -0.794 H17 5VD 47 
5VD H18 H18 H 0 1 N N N -14.854 13.450 -25.764 0.169  3.385  1.168  H18 5VD 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5VD O19 C4  SING N N 1  
5VD C3  C4  DOUB Y N 2  
5VD C3  C2  SING Y N 3  
5VD C4  CE2 SING Y N 4  
5VD C2  C1  DOUB Y N 5  
5VD O17 CZ  DOUB N N 6  
5VD CE2 CZ  SING N N 7  
5VD CE2 CD2 DOUB Y N 8  
5VD C1  CD2 SING Y N 9  
5VD C1  O18 SING N N 10 
5VD CZ  CE1 SING N N 11 
5VD CD2 CG  SING N N 12 
5VD CE1 C5  SING Y N 13 
5VD CE1 CD1 DOUB Y N 14 
5VD C22 O21 SING N N 15 
5VD CG  CD1 SING N N 16 
5VD CG  O16 DOUB N N 17 
5VD C5  C6  DOUB Y N 18 
5VD CD1 C8  SING Y N 19 
5VD O21 C14 SING N N 20 
5VD O20 C14 DOUB N N 21 
5VD C14 C12 SING N N 22 
5VD C6  C12 SING N N 23 
5VD C6  C7  SING Y N 24 
5VD C12 C11 SING N N 25 
5VD C8  C7  DOUB Y N 26 
5VD C8  O2  SING N N 27 
5VD C7  C9  SING N N 28 
5VD C11 C13 SING N N 29 
5VD C11 C10 SING N N 30 
5VD C11 O14 SING N N 31 
5VD C9  C10 SING N N 32 
5VD C9  O1  SING N N 33 
5VD C2  H1  SING N N 34 
5VD O14 H2  SING N N 35 
5VD C3  H3  SING N N 36 
5VD C5  H4  SING N N 37 
5VD C10 H5  SING N N 38 
5VD C10 H6  SING N N 39 
5VD C9  H7  SING N N 40 
5VD C12 H8  SING N N 41 
5VD O18 H9  SING N N 42 
5VD O19 H10 SING N N 43 
5VD C13 H11 SING N N 44 
5VD C13 H12 SING N N 45 
5VD C13 H13 SING N N 46 
5VD C22 H14 SING N N 47 
5VD C22 H15 SING N N 48 
5VD C22 H16 SING N N 49 
5VD O1  H17 SING N N 50 
5VD O2  H18 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5VD InChI            InChI                1.03  "InChI=1S/C21H18O9/c1-21(29)6-11(24)12-7(16(21)20(28)30-2)5-8-13(18(12)26)19(27)15-10(23)4-3-9(22)14(15)17(8)25/h3-5,11,16,22-24,26,29H,6H2,1-2H3/t11-,16-,21+/m0/s1" 
5VD InChIKey         InChI                1.03  ZBSRQGXAWDQXFX-SBOBAANCSA-N                                                                                                                                           
5VD SMILES_CANONICAL CACTVS               3.385 "COC(=O)[C@@H]1c2cc3C(=O)c4c(O)ccc(O)c4C(=O)c3c(O)c2[C@@H](O)C[C@@]1(C)O"                                                                                             
5VD SMILES           CACTVS               3.385 "COC(=O)[CH]1c2cc3C(=O)c4c(O)ccc(O)c4C(=O)c3c(O)c2[CH](O)C[C]1(C)O"                                                                                                   
5VD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@]1(C[C@@H](c2c(cc3c(c2O)C(=O)c4c(ccc(c4C3=O)O)O)[C@H]1C(=O)OC)O)O"                                                                                               
5VD SMILES           "OpenEye OEToolkits" 2.0.4 "CC1(CC(c2c(cc3c(c2O)C(=O)c4c(ccc(c4C3=O)O)O)C1C(=O)OC)O)O"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5VD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "methyl (1~{R},2~{R},4~{S})-2-methyl-2,4,5,7,10-pentakis(oxidanyl)-6,11-bis(oxidanylidene)-3,4-dihydro-1~{H}-tetracene-1-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5VD "Create component" 2015-12-09 PDBJ 
5VD "Initial release"  2016-12-21 RCSB 
# 
