data_7DD
# 
_chem_comp.id                                    7DD 
_chem_comp.name                                  "7-deazaadenosine-5'-diphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H16 N4 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-12-07 
_chem_comp.pdbx_modified_date                    2016-06-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        426.213 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7DD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EX5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7DD O1B   O1  O 0 1 N N N 21.597 -0.190  3.474 -6.049 1.962  -1.900 O1B   7DD 1  
7DD PB    P1  P 0 1 N N N 20.265 -0.369  2.813 -5.541 1.502  -0.443 PB    7DD 2  
7DD O2B   O2  O 0 1 N N N 19.176 0.242   3.645 -5.089 2.796  0.401  O2B   7DD 3  
7DD O3B   O3  O 0 1 N N N 20.168 0.072   1.399 -6.640 0.809  0.267  O3B   7DD 4  
7DD O3A   O4  O 0 1 N N N 20.044 -1.942  2.953 -4.290 0.501  -0.602 O3A   7DD 5  
7DD PA    P2  P 0 1 N N N 18.906 -2.873  2.362 -3.604 -0.594 0.359  PA    7DD 6  
7DD O1A   O5  O 0 1 N N N 19.639 -3.985  1.667 -4.462 -1.955 0.320  O1A   7DD 7  
7DD O2A   O6  O 0 1 N N N 17.946 -2.118  1.541 -3.562 -0.076 1.745  O2A   7DD 8  
7DD "O5'" O7  O 0 1 N N N 18.122 -3.440  3.617 -2.105 -0.889 -0.149 "O5'" 7DD 9  
7DD "C5'" C1  C 0 1 N N N 18.852 -4.102  4.635 -1.198 -1.739 0.555  "C5'" 7DD 10 
7DD "C4'" C2  C 0 1 N N R 17.878 -4.697  5.647 0.133  -1.801 -0.198 "C4'" 7DD 11 
7DD "O4'" O8  O 0 1 N N N 17.046 -5.618  4.921 0.818  -0.533 -0.113 "O4'" 7DD 12 
7DD "C1'" C3  C 0 1 N N R 16.898 -6.739  5.777 2.204  -0.829 -0.393 "C1'" 7DD 13 
7DD N9    N1  N 0 1 Y N N 16.475 -7.931  5.022 3.068  0.233  0.127  N9    7DD 14 
7DD C8    C4  C 0 1 Y N N 17.158 -8.510  4.027 2.739  1.085  1.149  C8    7DD 15 
7DD C16   C5  C 0 1 Y N N 16.474 -9.596  3.653 3.754  1.933  1.380  C16   7DD 16 
7DD C5    C6  C 0 1 Y N N 15.360 -9.700  4.392 4.812  1.594  0.430  C5    7DD 17 
7DD C6    C7  C 0 1 Y N N 14.341 -10.601 4.436 6.097  2.086  0.156  C6    7DD 18 
7DD N6    N2  N 0 1 N N N 14.314 -11.644 3.592 6.621  3.143  0.879  N6    7DD 19 
7DD N1    N3  N 0 1 Y N N 13.360 -10.475 5.331 6.799  1.511  -0.816 N1    7DD 20 
7DD C2    C8  C 0 1 Y N N 13.348 -9.399  6.231 6.303  0.502  -1.509 C2    7DD 21 
7DD N3    N4  N 0 1 Y N N 14.390 -8.483  6.162 5.103  0.008  -1.286 N3    7DD 22 
7DD C4    C9  C 0 1 Y N N 15.378 -8.666  5.260 4.325  0.517  -0.333 C4    7DD 23 
7DD "C2'" C10 C 0 1 N N R 18.294 -6.898  6.411 2.480  -2.157 0.346  "C2'" 7DD 24 
7DD "O2'" O9  O 0 1 N N N 18.273 -7.677  7.633 3.352  -2.987 -0.425 "O2'" 7DD 25 
7DD "C3'" C11 C 0 1 N N S 18.613 -5.468  6.743 1.086  -2.811 0.477  "C3'" 7DD 26 
7DD "O3'" O10 O 0 1 N N N 18.117 -5.068  8.040 1.055  -4.065 -0.208 "O3'" 7DD 27 
7DD H1    H1  H 0 1 N N N 22.207 0.198   2.858 -6.803 2.567  -1.880 H1    7DD 28 
7DD H2    H2  H 0 1 N N N 18.632 0.797   3.098 -4.371 3.300  -0.005 H2    7DD 29 
7DD H3    H3  H 0 1 N N N 19.357 -4.033  0.761 -4.532 -2.351 -0.560 H3    7DD 30 
7DD H4    H4  H 0 1 N N N 19.457 -4.906  4.190 -1.030 -1.341 1.556  H4    7DD 31 
7DD H5    H5  H 0 1 N N N 19.513 -3.383  5.140 -1.621 -2.741 0.628  H5    7DD 32 
7DD H6    H6  H 0 1 N N N 17.276 -3.895  6.099 -0.034 -2.075 -1.240 H6    7DD 33 
7DD H7    H7  H 0 1 N N N 16.169 -6.524  6.572 2.356  -0.953 -1.465 H7    7DD 34 
7DD H8    H8  H 0 1 N N N 18.090 -8.164  3.604 1.803  1.075  1.689  H8    7DD 35 
7DD H9    H9  H 0 1 N N N 16.773 -10.284 2.876 3.783  2.715  2.124  H9    7DD 36 
7DD H10   H10 H 0 1 N N N 13.506 -12.203 3.778 6.098  3.553  1.585  H10   7DD 37 
7DD H11   H11 H 0 1 N N N 14.278 -11.310 2.650 7.511  3.473  0.679  H11   7DD 38 
7DD H12   H12 H 0 1 N N N 12.554 -9.286  6.954 6.906  0.063  -2.289 H12   7DD 39 
7DD H13   H13 H 0 1 N N N 19.007 -7.303  5.678 2.906  -1.965 1.331  H13   7DD 40 
7DD H14   H14 H 0 1 N N N 19.154 -7.744  7.981 3.559  -3.835 -0.007 H14   7DD 41 
7DD H15   H15 H 0 1 N N N 19.696 -5.291  6.662 0.823  -2.942 1.527  H15   7DD 42 
7DD H16   H16 H 0 1 N N N 18.577 -5.550  8.718 1.636  -4.737 0.174  H16   7DD 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7DD O3B   PB    DOUB N N 1  
7DD O2A   PA    DOUB N N 2  
7DD O1A   PA    SING N N 3  
7DD PA    O3A   SING N N 4  
7DD PA    "O5'" SING N N 5  
7DD PB    O3A   SING N N 6  
7DD PB    O1B   SING N N 7  
7DD PB    O2B   SING N N 8  
7DD N6    C6    SING N N 9  
7DD "O5'" "C5'" SING N N 10 
7DD C16   C8    DOUB Y N 11 
7DD C16   C5    SING Y N 12 
7DD C8    N9    SING Y N 13 
7DD C5    C6    DOUB Y N 14 
7DD C5    C4    SING Y N 15 
7DD C6    N1    SING Y N 16 
7DD "C5'" "C4'" SING N N 17 
7DD "O4'" "C4'" SING N N 18 
7DD "O4'" "C1'" SING N N 19 
7DD N9    C4    SING Y N 20 
7DD N9    "C1'" SING N N 21 
7DD C4    N3    DOUB Y N 22 
7DD N1    C2    DOUB Y N 23 
7DD "C4'" "C3'" SING N N 24 
7DD "C1'" "C2'" SING N N 25 
7DD N3    C2    SING Y N 26 
7DD "C2'" "C3'" SING N N 27 
7DD "C2'" "O2'" SING N N 28 
7DD "C3'" "O3'" SING N N 29 
7DD O1B   H1    SING N N 30 
7DD O2B   H2    SING N N 31 
7DD O1A   H3    SING N N 32 
7DD "C5'" H4    SING N N 33 
7DD "C5'" H5    SING N N 34 
7DD "C4'" H6    SING N N 35 
7DD "C1'" H7    SING N N 36 
7DD C8    H8    SING N N 37 
7DD C16   H9    SING N N 38 
7DD N6    H10   SING N N 39 
7DD N6    H11   SING N N 40 
7DD C2    H12   SING N N 41 
7DD "C2'" H13   SING N N 42 
7DD "O2'" H14   SING N N 43 
7DD "C3'" H15   SING N N 44 
7DD "O3'" H16   SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7DD InChI            InChI                1.03  "InChI=1S/C11H16N4O10P2/c12-9-5-1-2-15(10(5)14-4-13-9)11-8(17)7(16)6(24-11)3-23-27(21,22)25-26(18,19)20/h1-2,4,6-8,11,16-17H,3H2,(H,21,22)(H2,12,13,14)(H2,18,19,20)/t6-,7-,8-,11-/m1/s1" 
7DD InChIKey         InChI                1.03  NCKAOCPROMQFJK-KCGFPETGSA-N                                                                                                                                                               
7DD SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(ccc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O"                                                                                                                 
7DD SMILES           CACTVS               3.385 "Nc1ncnc2n(ccc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O"                                                                                                                       
7DD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1cn(c2c1c(ncn2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                 
7DD SMILES           "OpenEye OEToolkits" 2.0.4 "c1cn(c2c1c(ncn2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7DD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7DD "Create component" 2015-12-07 RCSB 
7DD "Initial release"  2016-06-15 RCSB 
# 
