data_8VD
#

_chem_comp.id                                   8VD
_chem_comp.name                                 "N-(piperidin-4-yl)-6-(trifluoromethyl)pyrimidin-4-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H13 F3 N4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-10-01
_chem_comp.pdbx_modified_date                   2022-02-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       246.232
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8VD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7SED
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8VD  C3   C1   C  0  1  Y  N  N  22.916  33.610   8.947  -0.001   1.483   0.033  C3   8VD   1  
8VD  N1   N1   N  0  1  N  N  N  19.925  30.348  12.067   4.600  -1.126   0.303  N1   8VD   2  
8VD  C8   C2   C  0  1  N  N  N  21.172  30.472   9.932   3.519   0.730  -0.876  C8   8VD   3  
8VD  C5   C3   C  0  1  N  N  N  21.431  32.261  11.642   2.444  -0.303   1.126  C5   8VD   4  
8VD  N    N2   N  0  1  N  N  N  22.638  32.384   9.485   1.380   1.570  -0.035  N    8VD   5  
8VD  C    C4   C  0  1  N  N  N  21.636  37.122   8.442  -2.757  -1.096  -0.127  C    8VD   6  
8VD  C1   C5   C  0  1  Y  N  N  22.436  35.850   8.347  -2.019   0.213  -0.008  C1   8VD   7  
8VD  C2   C6   C  0  1  Y  N  N  22.059  34.703   9.056  -0.641   0.247  -0.082  C2   8VD   8  
8VD  C4   C7   C  0  1  N  N  N  21.407  31.958  10.157   2.181   0.360  -0.229  C4   8VD   9  
8VD  C6   C8   C  0  1  N  N  N  20.141  31.792  12.299   3.333  -1.532   0.924  C6   8VD  10  
8VD  C7   C9   C  0  1  N  N  N  19.895  30.020  10.624   4.376  -0.530  -1.020  C7   8VD  11  
8VD  C9   C10  C  0  1  Y  N  N  24.270  34.832   7.592  -2.052   2.495   0.284  C9   8VD  12  
8VD  F    F1   F  0  1  N  N  N  22.399  38.186   8.566  -2.911  -1.661   1.144  F    8VD  13  
8VD  F1   F2   F  0  1  N  N  N  20.935  37.351   7.345  -4.016  -0.872  -0.693  F1   8VD  14  
8VD  F2   F3   F  0  1  N  N  N  20.807  37.119   9.470  -2.028  -1.970  -0.941  F2   8VD  15  
8VD  N2   N3   N  0  1  Y  N  N  24.040  33.679   8.220  -0.739   2.575   0.214  N2   8VD  16  
8VD  N3   N4   N  0  1  Y  N  N  23.527  35.943   7.580  -2.685   1.345   0.169  N3   8VD  17  
8VD  H7   H1   H  0  1  N  N  N  19.053  30.081  12.477   5.241  -1.903   0.247  H7   8VD  18  
8VD  H11  H3   H  0  1  N  N  N  21.086  30.279   8.852   3.341   1.163  -1.860  H11  8VD  19  
8VD  H10  H4   H  0  1  N  N  N  22.023  29.906  10.339   4.039   1.454  -0.248  H10  8VD  20  
8VD  H3   H5   H  0  1  N  N  N  22.283  31.741  12.104   2.947   0.405   1.785  H3   8VD  21  
8VD  H4   H6   H  0  1  N  N  N  21.539  33.346  11.789   1.498  -0.607   1.573  H4   8VD  22  
8VD  H1   H7   H  0  1  N  N  N  22.749  31.742   8.726   1.816   2.433   0.045  H1   8VD  23  
8VD  H    H8   H  0  1  N  N  N  21.159  34.668   9.651  -0.071  -0.660  -0.226  H    8VD  24  
8VD  H2   H9   H  0  1  N  N  N  20.561  32.504   9.714   1.644  -0.333  -0.876  H2   8VD  25  
8VD  H6   H10  H  0  1  N  N  N  20.200  31.978  13.382   2.823  -2.246   0.275  H6   8VD  26  
8VD  H5   H11  H  0  1  N  N  N  19.296  32.355  11.876   3.533  -1.998   1.889  H5   8VD  27  
8VD  H8   H12  H  0  1  N  N  N  19.036  30.526  10.159   5.335  -0.268  -1.467  H8   8VD  28  
8VD  H9   H13  H  0  1  N  N  N  19.788  28.932  10.505   3.862  -1.248  -1.659  H9   8VD  29  
8VD  H12  H14  H  0  1  N  N  N  25.181  34.874   7.014  -2.626   3.398   0.433  H12  8VD  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8VD  F1  C    SING  N  N   1  
8VD  N3  C9   DOUB  Y  N   2  
8VD  N3  C1   SING  Y  N   3  
8VD  C9  N2   SING  Y  N   4  
8VD  N2  C3   DOUB  Y  N   5  
8VD  C1  C    SING  N  N   6  
8VD  C1  C2   DOUB  Y  N   7  
8VD  C   F    SING  N  N   8  
8VD  C   F2   SING  N  N   9  
8VD  C3  C2   SING  Y  N  10  
8VD  C3  N    SING  N  N  11  
8VD  N   C4   SING  N  N  12  
8VD  C8  C4   SING  N  N  13  
8VD  C8  C7   SING  N  N  14  
8VD  C4  C5   SING  N  N  15  
8VD  C7  N1   SING  N  N  16  
8VD  C5  C6   SING  N  N  17  
8VD  N1  C6   SING  N  N  18  
8VD  N1  H7   SING  N  N  19  
8VD  C8  H11  SING  N  N  20  
8VD  C8  H10  SING  N  N  21  
8VD  C5  H3   SING  N  N  22  
8VD  C5  H4   SING  N  N  23  
8VD  N   H1   SING  N  N  24  
8VD  C2  H    SING  N  N  25  
8VD  C4  H2   SING  N  N  26  
8VD  C6  H6   SING  N  N  27  
8VD  C6  H5   SING  N  N  28  
8VD  C7  H8   SING  N  N  29  
8VD  C7  H9   SING  N  N  30  
8VD  C9  H12  SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8VD  SMILES            ACDLabs               12.01  "FC(F)(F)c1cc(ncn1)NC1CCNCC1"  
8VD  InChI             InChI                 1.03   "InChI=1S/C10H13F3N4/c11-10(12,13)8-5-9(16-6-15-8)17-7-1-3-14-4-2-7/h5-7,14H,1-4H2,(H,15,16,17)"  
8VD  InChIKey          InChI                 1.03   GRSDOXXGQOHABE-UHFFFAOYSA-N  
8VD  SMILES_CANONICAL  CACTVS                3.385  "FC(F)(F)c1cc(NC2CCNCC2)ncn1"  
8VD  SMILES            CACTVS                3.385  "FC(F)(F)c1cc(NC2CCNCC2)ncn1"  
8VD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c(ncnc1NC2CCNCC2)C(F)(F)F"  
8VD  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c(ncnc1NC2CCNCC2)C(F)(F)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8VD  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-(piperidin-4-yl)-6-(trifluoromethyl)pyrimidin-4-amine"  
8VD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-piperidin-4-yl-6-(trifluoromethyl)pyrimidin-4-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8VD  "Create component"  2021-10-01  RCSB  
8VD  "Initial release"   2022-02-09  RCSB  
##
