data_9KD
# 
_chem_comp.id                                    9KD 
_chem_comp.name                                  "N-(6-cyano-3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-4-methylnaphthalen-1-yl)prop-2-enamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H22 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-17 
_chem_comp.pdbx_modified_date                    2017-08-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        482.487 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9KD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VQS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9KD C1  C1  C 0 1 Y N N 460.294 3.270  117.777 2.227  1.759  -2.771 C1  9KD 1  
9KD C2  C2  C 0 1 Y N N 460.551 2.723  119.058 1.850  1.321  -1.512 C2  9KD 2  
9KD C4  C3  C 0 1 Y N N 462.831 3.608  118.949 -0.356 0.850  -2.343 C4  9KD 3  
9KD O5  O1  O 0 1 N N N 458.456 5.222  124.535 -3.198 3.296  0.465  O5  9KD 4  
9KD C7  C4  C 0 1 N N N 458.478 1.547  119.080 4.059  1.817  -0.783 C7  9KD 5  
9KD C9  C5  C 0 1 N N N 458.795 -1.502 120.055 6.144  -0.338 0.412  C9  9KD 6  
9KD C11 C6  C 0 1 N N N 459.611 -1.035 122.716 4.368  -1.503 2.115  C11 9KD 7  
9KD C13 C7  C 0 1 Y N N 461.968 3.118  122.020 -1.122 0.087  0.124  C13 9KD 8  
9KD C14 C8  C 0 1 Y N N 462.691 2.710  123.160 -1.559 -1.158 -0.272 C14 9KD 9  
9KD C15 C9  C 0 1 Y N N 462.591 3.435  124.368 -2.905 -1.518 -0.085 C15 9KD 10 
9KD C16 C10 C 0 1 Y N N 461.752 4.582  124.437 -3.801 -0.594 0.510  C16 9KD 11 
9KD C17 C11 C 0 1 Y N N 461.025 4.996  123.289 -3.326 0.675  0.906  C17 9KD 12 
9KD C19 C12 C 0 1 Y N N 463.322 3.025  125.508 -3.376 -2.780 -0.480 C19 9KD 13 
9KD C21 C13 C 0 1 Y N N 462.400 4.874  126.784 -5.587 -2.175 0.308  C21 9KD 14 
9KD C22 C14 C 0 1 Y N N 461.668 5.294  125.658 -5.147 -0.950 0.696  C22 9KD 15 
9KD C23 C15 C 0 1 N N N 463.983 3.311  127.879 -5.196 -4.388 -0.683 C23 9KD 16 
9KD C24 C16 C 0 1 N N N 463.585 1.483  123.067 -0.597 -2.131 -0.903 C24 9KD 17 
9KD C25 C17 C 0 1 N N N 458.981 6.188  123.985 -4.032 2.915  1.265  C25 9KD 18 
9KD C26 C18 C 0 1 N N N 458.368 7.500  123.912 -4.863 3.893  1.982  C26 9KD 19 
9KD C27 C19 C 0 1 N N N 457.162 7.677  124.478 -4.703 5.194  1.757  C27 9KD 20 
9KD C3  C20 C 0 1 Y N N 461.825 2.905  119.640 0.553  0.864  -1.297 C3  9KD 21 
9KD C5  C21 C 0 1 Y N N 462.568 4.150  117.677 0.023  1.300  -3.594 C5  9KD 22 
9KD C6  C22 C 0 1 Y N N 461.298 3.980  117.093 1.313  1.747  -3.809 C6  9KD 23 
9KD O1  O2  O 0 1 N N N 462.100 2.375  120.873 0.178  0.432  -0.063 O1  9KD 24 
9KD O2  O3  O 0 1 N N N 459.618 2.019  119.784 2.746  1.336  -0.489 O2  9KD 25 
9KD C8  C23 C 0 1 N N N 457.656 0.666  120.028 4.918  1.760  0.481  C8  9KD 26 
9KD N1  N1  N 0 1 N N N 458.450 -0.311 120.735 5.099  0.363  0.886  N1  9KD 27 
9KD N2  N2  N 0 1 N N N 459.554 -2.427 120.758 6.334  -1.622 0.767  N2  9KD 28 
9KD C10 C24 C 0 1 N N N 460.000 -2.282 122.068 5.473  -2.229 1.609  C10 9KD 29 
9KD C12 C25 C 0 1 N N N 458.870 -0.124 122.042 4.202  -0.216 1.742  C12 9KD 30 
9KD C18 C26 C 0 1 Y N N 461.135 4.254  122.090 -2.002 1.000  0.710  C18 9KD 31 
9KD C20 C27 C 0 1 Y N N 463.228 3.740  126.713 -4.709 -3.102 -0.282 C20 9KD 32 
9KD O3  O4  O 0 1 N N N 458.460 -1.741 118.897 6.926  0.194  -0.352 O3  9KD 33 
9KD O4  O5  O 0 1 N N N 460.667 -3.171 122.589 5.644  -3.391 1.931  O4  9KD 34 
9KD N3  N3  N 0 1 N N N 460.181 6.142  123.380 -4.194 1.596  1.492  N3  9KD 35 
9KD N4  N4  N 0 1 N N N 464.582 2.970  128.806 -5.583 -5.407 -1.000 N4  9KD 36 
9KD H1  H1  H 0 1 N N N 459.323 3.141  117.323 3.233  2.114  -2.941 H1  9KD 37 
9KD H2  H2  H 0 1 N N N 463.806 3.731  119.396 -1.363 0.496  -2.179 H2  9KD 38 
9KD H3  H3  H 0 1 N N N 457.870 2.399  118.744 4.509  1.195  -1.557 H3  9KD 39 
9KD H4  H4  H 0 1 N N N 458.797 0.958  118.208 3.998  2.847  -1.135 H4  9KD 40 
9KD H5  H5  H 0 1 N N N 459.914 -0.838 123.734 3.668  -1.972 2.790  H5  9KD 41 
9KD H6  H6  H 0 1 N N N 463.958 2.154  125.451 -2.705 -3.493 -0.935 H6  9KD 42 
9KD H7  H7  H 0 1 N N N 462.325 5.426  127.709 -6.623 -2.441 0.455  H7  9KD 43 
9KD H8  H8  H 0 1 N N N 461.036 6.167  125.726 -5.833 -0.250 1.149  H8  9KD 44 
9KD H9  H9  H 0 1 N N N 464.594 1.787  122.753 -0.136 -2.741 -0.127 H9  9KD 45 
9KD H10 H10 H 0 1 N N N 463.639 0.993  124.051 -1.135 -2.774 -1.599 H10 9KD 46 
9KD H11 H11 H 0 1 N N N 463.168 0.781  122.330 0.176  -1.581 -1.440 H11 9KD 47 
9KD H12 H12 H 0 1 N N N 458.869 8.317  123.414 -5.604 3.555  2.692  H12 9KD 48 
9KD H13 H13 H 0 1 N N N 456.683 8.644  124.438 -5.313 5.912  2.284  H13 9KD 49 
9KD H14 H14 H 0 1 N N N 456.671 6.852  124.973 -3.962 5.532  1.048  H14 9KD 50 
9KD H15 H15 H 0 1 N N N 463.338 4.695  117.151 -0.686 1.288  -4.409 H15 9KD 51 
9KD H16 H16 H 0 1 N N N 461.094 4.396  116.117 1.606  2.098  -4.788 H16 9KD 52 
9KD H17 H17 H 0 1 N N N 457.162 1.315  120.767 5.891  2.208  0.280  H17 9KD 53 
9KD H18 H18 H 0 1 N N N 456.894 0.135  119.438 4.423  2.309  1.282  H18 9KD 54 
9KD H19 H19 H 0 1 N N N 459.802 -3.271 120.282 7.094  -2.113 0.416  H19 9KD 55 
9KD H20 H20 H 0 1 N N N 458.594 0.790  122.546 3.365  0.354  2.118  H20 9KD 56 
9KD H21 H21 H 0 1 N N N 460.575 4.561  121.219 -1.639 1.970  1.014  H21 9KD 57 
9KD H22 H22 H 0 1 N N N 460.511 6.986  122.957 -4.915 1.288  2.064  H22 9KD 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9KD C6  C5  DOUB Y N 1  
9KD C6  C1  SING Y N 2  
9KD C5  C4  SING Y N 3  
9KD C1  C2  DOUB Y N 4  
9KD O3  C9  DOUB N N 5  
9KD C4  C3  DOUB Y N 6  
9KD C2  C3  SING Y N 7  
9KD C2  O2  SING N N 8  
9KD C7  O2  SING N N 9  
9KD C7  C8  SING N N 10 
9KD C3  O1  SING N N 11 
9KD C8  N1  SING N N 12 
9KD C9  N1  SING N N 13 
9KD C9  N2  SING N N 14 
9KD N1  C12 SING N N 15 
9KD N2  C10 SING N N 16 
9KD O1  C13 SING N N 17 
9KD C13 C18 DOUB Y N 18 
9KD C13 C14 SING Y N 19 
9KD C12 C11 DOUB N N 20 
9KD C10 O4  DOUB N N 21 
9KD C10 C11 SING N N 22 
9KD C18 C17 SING Y N 23 
9KD C24 C14 SING N N 24 
9KD C14 C15 DOUB Y N 25 
9KD C17 N3  SING N N 26 
9KD C17 C16 DOUB Y N 27 
9KD N3  C25 SING N N 28 
9KD C26 C25 SING N N 29 
9KD C26 C27 DOUB N N 30 
9KD C25 O5  DOUB N N 31 
9KD C15 C16 SING Y N 32 
9KD C15 C19 SING Y N 33 
9KD C16 C22 SING Y N 34 
9KD C19 C20 DOUB Y N 35 
9KD C22 C21 DOUB Y N 36 
9KD C20 C21 SING Y N 37 
9KD C20 C23 SING N N 38 
9KD C23 N4  TRIP N N 39 
9KD C1  H1  SING N N 40 
9KD C4  H2  SING N N 41 
9KD C7  H3  SING N N 42 
9KD C7  H4  SING N N 43 
9KD C11 H5  SING N N 44 
9KD C19 H6  SING N N 45 
9KD C21 H7  SING N N 46 
9KD C22 H8  SING N N 47 
9KD C24 H9  SING N N 48 
9KD C24 H10 SING N N 49 
9KD C24 H11 SING N N 50 
9KD C26 H12 SING N N 51 
9KD C27 H13 SING N N 52 
9KD C27 H14 SING N N 53 
9KD C5  H15 SING N N 54 
9KD C6  H16 SING N N 55 
9KD C8  H17 SING N N 56 
9KD C8  H18 SING N N 57 
9KD N2  H19 SING N N 58 
9KD C12 H20 SING N N 59 
9KD C18 H21 SING N N 60 
9KD N3  H22 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9KD SMILES           ACDLabs              12.01 "c1c(c(ccc1)Oc2cc(c3c(c2C)cc(cc3)C#N)NC(=O)\C=C)OCCN4C(NC(C=C4)=O)=O"                                                                                                                  
9KD InChI            InChI                1.03  "InChI=1S/C27H22N4O5/c1-3-25(32)29-21-15-24(17(2)20-14-18(16-28)8-9-19(20)21)36-23-7-5-4-6-22(23)35-13-12-31-11-10-26(33)30-27(31)34/h3-11,14-15H,1,12-13H2,2H3,(H,29,32)(H,30,33,34)" 
9KD InChIKey         InChI                1.03  FFULUQDOKSUESE-UHFFFAOYSA-N                                                                                                                                                            
9KD SMILES_CANONICAL CACTVS               3.385 "Cc1c(Oc2ccccc2OCCN3C=CC(=O)NC3=O)cc(NC(=O)C=C)c4ccc(cc14)C#N"                                                                                                                         
9KD SMILES           CACTVS               3.385 "Cc1c(Oc2ccccc2OCCN3C=CC(=O)NC3=O)cc(NC(=O)C=C)c4ccc(cc14)C#N"                                                                                                                         
9KD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c2cc(ccc2c(cc1Oc3ccccc3OCCN4C=CC(=O)NC4=O)NC(=O)C=C)C#N"                                                                                                                           
9KD SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1c2cc(ccc2c(cc1Oc3ccccc3OCCN4C=CC(=O)NC4=O)NC(=O)C=C)C#N"                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9KD "SYSTEMATIC NAME" ACDLabs              12.01 "N-(6-cyano-3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-4-methylnaphthalen-1-yl)prop-2-enamide"  
9KD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[3-[2-[2-[2,4-bis(oxidanylidene)pyrimidin-1-yl]ethoxy]phenoxy]-6-cyano-4-methyl-naphthalen-1-yl]prop-2-enamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9KD "Create component" 2017-05-17 RCSB 
9KD "Initial release"  2017-08-23 RCSB 
# 
