data_B9D
# 
_chem_comp.id                                    B9D 
_chem_comp.name                                  5-fluoro-alpha-L-idopyranose 
_chem_comp.type                                  "L-saccharide, alpha linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H11 F O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;(2R,3R,4R,5S,6R)-6-fluoranyl-6-(hydroxymethyl)oxane-2,3,4,5-tetrol; 5-fluoro-alpha-L-idose; 5-fluoro-L-idose;
5-fluoro-idose
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-08-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        198.146 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B9D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3IJ7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 B9D "(2R,3R,4R,5S,6R)-6-fluoranyl-6-(hydroxymethyl)oxane-2,3,4,5-tetrol" PDB ? 
2 B9D 5-fluoro-alpha-L-idose                                               PDB ? 
3 B9D 5-fluoro-L-idose                                                     PDB ? 
4 B9D 5-fluoro-idose                                                       PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B9D O1  O1  O 0 1 N Y N N N N 12.387 17.348 46.419 -1.359 -1.909 -0.444 O1  B9D 1  
B9D O5  O   O 0 1 N N N N N N 13.329 16.341 44.456 -0.017 -0.251 -1.391 O5  B9D 2  
B9D C5  C1  C 0 1 N N R N N N 12.246 17.166 45.005 -1.353 -0.605 -1.030 C5  B9D 3  
B9D F1  F1  F 0 1 N N N N N N 14.246 15.283 42.596 0.934  -1.517 0.290  F1  B9D 4  
B9D C4  C2  C 0 1 N N R N N N 12.248 18.533 44.295 -1.894 0.411  -0.021 C4  B9D 5  
B9D O4  O2  O 0 1 N N N N N N 11.220 19.353 44.823 -1.939 1.705  -0.624 O4  B9D 6  
B9D C3  C3  C 0 1 N N R N N N 12.030 18.283 42.794 -0.971 0.446  1.201  C3  B9D 7  
B9D O3  O3  O 0 1 N N N N N N 12.043 19.506 42.081 -0.978 -0.830 1.843  O3  B9D 8  
B9D C2  C4  C 0 1 N N S N N N 13.132 17.369 42.248 0.451  0.783  0.743  C2  B9D 9  
B9D O2  O4  O 0 1 N N N N N N 12.909 17.105 40.846 0.469  2.088  0.160  O2  B9D 10 
B9D C1  C5  C 0 1 N N R N N N 13.189 16.032 43.032 0.902  -0.247 -0.296 C1  B9D 11 
B9D C6  C6  C 0 1 N N N N N N 11.924 15.104 42.760 2.299  0.117  -0.803 C6  B9D 12 
B9D O6  O6  O 0 1 N N N N N N 10.651 15.804 42.920 3.217  0.121  0.292  O6  B9D 13 
B9D HO1 HO1 H 0 1 N Y N N N N 11.673 17.885 46.742 -1.027 -2.604 -1.028 HO1 B9D 14 
B9D H5  H1  H 0 1 N N N N N N 11.284 16.676 44.795 -1.982 -0.604 -1.920 H5  B9D 15 
B9D H4  H2  H 0 1 N N N N N N 13.231 19.006 44.438 -2.898 0.118  0.288  H4  B9D 16 
B9D HO4 HO2 H 0 1 N Y N N N N 11.227 20.194 44.381 -2.502 1.755  -1.408 HO4 B9D 17 
B9D H3  H3  H 0 1 N N N N N N 11.061 17.779 42.662 -1.319 1.208  1.899  H3  B9D 18 
B9D HO3 HO3 H 0 1 N Y N N N N 11.907 19.335 41.156 -1.850 -1.109 2.154  HO3 B9D 19 
B9D H2  H4  H 0 1 N N N N N N 14.098 17.880 42.375 1.126  0.757  1.599  H2  B9D 20 
B9D HO2 HO4 H 0 1 N Y N N N N 13.597 16.538 40.517 0.190  2.791  0.762  HO2 B9D 21 
B9D H6  H6  H 0 1 N N N N N N 11.986 14.722 41.730 2.619  -0.617 -1.543 H6  B9D 22 
B9D H6A H6A H 0 1 N N N N N N 11.951 14.261 43.466 2.273  1.106  -1.260 H6A B9D 23 
B9D HO6 HO6 H 0 1 N N N N N N 9.935  15.204 42.746 4.124  0.344  0.044  HO6 B9D 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B9D C5 O1  SING N N 1  
B9D O1 HO1 SING N N 2  
B9D C1 O5  SING N N 3  
B9D O5 C5  SING N N 4  
B9D C4 C5  SING N N 5  
B9D C5 H5  SING N N 6  
B9D F1 C1  SING N N 7  
B9D C3 C4  SING N N 8  
B9D C4 O4  SING N N 9  
B9D C4 H4  SING N N 10 
B9D O4 HO4 SING N N 11 
B9D O3 C3  SING N N 12 
B9D C2 C3  SING N N 13 
B9D C3 H3  SING N N 14 
B9D O3 HO3 SING N N 15 
B9D O2 C2  SING N N 16 
B9D C2 C1  SING N N 17 
B9D C2 H2  SING N N 18 
B9D O2 HO2 SING N N 19 
B9D C6 C1  SING N N 20 
B9D C6 O6  SING N N 21 
B9D C6 H6  SING N N 22 
B9D C6 H6A SING N N 23 
B9D O6 HO6 SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B9D SMILES           ACDLabs              12.01 "FC1(OC(O)C(O)C(O)C1O)CO"                                                                 
B9D InChI            InChI                1.03  "InChI=1S/C6H11FO6/c7-6(1-8)4(11)2(9)3(10)5(12)13-6/h2-5,8-12H,1H2/t2-,3-,4+,5-,6+/m1/s1" 
B9D InChIKey         InChI                1.03  YQZCKDSOGGIGPL-DVKNGEFBSA-N                                                               
B9D SMILES_CANONICAL CACTVS               3.370 "OC[C@]1(F)O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O"                                           
B9D SMILES           CACTVS               3.370 "OC[C]1(F)O[CH](O)[CH](O)[CH](O)[CH]1O"                                                   
B9D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@]1([C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)F)O"                                        
B9D SMILES           "OpenEye OEToolkits" 1.7.6 "C(C1(C(C(C(C(O1)O)O)O)O)F)O"                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B9D "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S,6R)-6-fluoro-6-(hydroxymethyl)tetrahydro-2H-pyran-2,3,4,5-tetrol (non-preferred name)" 
B9D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4R,5S,6R)-6-fluoranyl-6-(hydroxymethyl)oxane-2,3,4,5-tetrol"                                 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
B9D "CARBOHYDRATE ISOMER"                 L        PDB ? 
B9D "CARBOHYDRATE RING"                   pyranose PDB ? 
B9D "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
B9D "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B9D "Create component"         2009-08-18 RCSB 
B9D "Modify descriptor"        2011-06-04 RCSB 
B9D "Other modification"       2012-12-21 RCSB 
B9D "Other modification"       2020-07-03 RCSB 
B9D "Modify name"              2020-07-17 RCSB 
B9D "Modify synonyms"          2020-07-17 RCSB 
B9D "Modify linking type"      2020-07-17 RCSB 
B9D "Modify atom id"           2020-07-17 RCSB 
B9D "Modify component atom id" 2020-07-17 RCSB 
B9D "Modify leaving atom flag" 2020-07-17 RCSB 
B9D "Modify PCM"               2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 B9D ASP None Carbohydrate "Amino-acid side chain" "Any position" C5 OD1 ? ? 
2 B9D ASP None Carbohydrate "Amino-acid side chain" "Any position" C5 OD2 ? ? 
# 
