data_G5D
# 
_chem_comp.id                                    G5D 
_chem_comp.name                                  "4-({4-[(1S,4S)-5-(cyanoacetyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyrimidin-2-yl}amino)-N-ethylbenzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H23 N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-05-04 
_chem_comp.pdbx_modified_date                    2018-08-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        405.453 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G5D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6DBK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G5D N3  N1  N 0 1 N N N 7.908  -8.468  15.107 2.923   -0.575 -0.833 N3  G5D 1  
G5D C4  C1  C 0 1 Y N N 10.168 -11.278 14.491 -0.255  -2.391 -0.938 C4  G5D 2  
G5D N2  N2  N 0 1 Y N N 10.004 -12.015 15.604 -1.075  -1.384 -0.676 N2  G5D 3  
G5D C7  C2  C 0 1 N N N 5.727  -7.662  15.749 4.704   1.049  -0.854 C7  G5D 4  
G5D C6  C3  C 0 1 N N S 7.279  -6.266  14.555 4.305   -0.217 1.116  C6  G5D 5  
G5D C9  C4  C 0 1 Y N N 8.047  -12.142 18.729 -2.852  0.586  -0.031 C9  G5D 6  
G5D C13 C5  C 0 1 Y N N 6.332  -11.010 19.982 -4.582  -0.895 0.723  C13 G5D 7  
G5D C20 C6  C 0 1 N N N 3.849  -10.982 23.624 -9.332  0.316  0.241  C20 G5D 8  
G5D C21 C7  C 0 1 N N N 2.545  -11.781 23.657 -10.166 1.478  -0.303 C21 G5D 9  
G5D C8  C8  C 0 1 N N S 7.203  -7.789  16.222 3.180   0.876  -0.569 C8  G5D 10 
G5D N5  N3  N 0 1 N N N 8.910  -12.325 17.633 -1.499  0.865  -0.201 N5  G5D 11 
G5D C18 C9  C 0 1 N N N 5.106  -5.411  12.658 7.672   0.924  -0.495 C18 G5D 12 
G5D C16 C10 C 0 1 N N N 7.699  -6.328  16.051 3.202   0.896  1.001  C16 G5D 13 
G5D C19 C11 C 0 1 N N N 3.949  -5.314  11.796 9.054   0.688  -0.048 C19 G5D 14 
G5D C1  C12 C 0 1 Y N N 9.074  -11.513 16.516 -0.608  -0.161 -0.473 C1  G5D 15 
G5D N1  N4  N 0 1 Y N N 8.368  -10.344 16.397 0.688   0.106  -0.523 N1  G5D 16 
G5D C2  C13 C 0 1 Y N N 8.612  -9.642  15.233 1.567   -0.857 -0.781 C2  G5D 17 
G5D C3  C14 C 0 1 Y N N 9.496  -10.085 14.228 1.105   -2.158 -0.994 C3  G5D 18 
G5D C5  C15 C 0 1 N N N 8.063  -7.502  13.994 3.661   -1.318 0.217  C5  G5D 19 
G5D N4  N5  N 0 1 N N N 5.859  -6.650  14.661 5.385   0.362  0.264  N4  G5D 20 
G5D C10 C16 C 0 1 Y N N 8.218  -13.039 19.805 -3.810  1.503  -0.453 C10 G5D 21 
G5D C11 C17 C 0 1 Y N N 7.484  -12.879 20.964 -5.148  1.227  -0.291 C11 G5D 22 
G5D C12 C18 C 0 1 Y N N 6.565  -11.836 21.071 -5.546  0.024  0.299  C12 G5D 23 
G5D C14 C19 C 0 1 Y N N 7.057  -11.162 18.805 -3.245  -0.613 0.558  C14 G5D 24 
G5D C15 C20 C 0 1 N N N 5.932  -11.608 22.393 -6.980  -0.274 0.475  C15 G5D 25 
G5D O1  O1  O 0 1 N N N 6.571  -11.719 23.438 -7.324  -1.321 0.989  O1  G5D 26 
G5D N6  N6  N 0 1 N N N 4.594  -11.253 22.392 -7.908  0.613  0.066  N6  G5D 27 
G5D C17 C21 C 0 1 N N N 4.820  -6.375  13.793 6.714   0.276  0.472  C17 G5D 28 
G5D O2  O2  O 0 1 N N N 3.724  -6.884  13.988 7.139   -0.323 1.437  O2  G5D 29 
G5D N7  N7  N 0 1 N N N 3.029  -5.246  11.102 10.121  0.506  0.297  N7  G5D 30 
G5D H2  H1  H 0 1 N N N 10.868 -11.635 13.750 -0.645  -3.385 -1.101 H2  G5D 31 
G5D H6  H2  H 0 1 N N N 5.074  -7.302  16.558 4.967   0.582  -1.802 H6  G5D 32 
G5D H7  H3  H 0 1 N N N 5.343  -8.619  15.366 4.968   2.107  -0.867 H7  G5D 33 
G5D H5  H4  H 0 1 N N N 7.494  -5.313  14.049 4.595   -0.512 2.124  H5  G5D 34 
G5D H12 H5  H 0 1 N N N 5.578  -10.239 20.049 -4.886  -1.826 1.179  H12 G5D 35 
G5D H19 H6  H 0 1 N N N 4.467  -11.265 24.489 -9.547  0.180  1.301  H19 G5D 36 
G5D H20 H7  H 0 1 N N N 3.615  -9.908  23.675 -9.583  -0.595 -0.301 H20 G5D 37 
G5D H23 H8  H 0 1 N N N 2.004  -11.562 24.589 -11.225 1.258  -0.173 H23 G5D 38 
G5D H21 H9  H 0 1 N N N 1.921  -11.500 22.796 -9.915  2.390  0.239  H21 G5D 39 
G5D H22 H10 H 0 1 N N N 2.773  -12.856 23.609 -9.950  1.615  -1.363 H22 G5D 40 
G5D H8  H11 H 0 1 N N N 7.340  -8.218  17.225 2.513   1.580  -1.067 H8  G5D 41 
G5D H9  H12 H 0 1 N N N 9.480  -13.146 17.661 -1.180  1.779  -0.130 H9  G5D 42 
G5D H18 H13 H 0 1 N N N 5.965  -5.776  12.076 7.480   1.997  -0.532 H18 G5D 43 
G5D H17 H14 H 0 1 N N N 5.338  -4.418  13.071 7.532   0.495  -1.487 H17 G5D 44 
G5D H15 H15 H 0 1 N N N 8.782  -6.214  16.205 2.252   0.584  1.434  H15 G5D 45 
G5D H16 H16 H 0 1 N N N 7.161  -5.608  16.685 3.537   1.854  1.399  H16 G5D 46 
G5D H1  H17 H 0 1 N N N 9.644  -9.534  13.311 1.795   -2.961 -1.205 H1  G5D 47 
G5D H4  H18 H 0 1 N N N 7.610  -7.880  13.066 2.974   -1.929 0.802  H4  G5D 48 
G5D H3  H19 H 0 1 N N N 9.121  -7.261  13.814 4.434   -1.940 -0.232 H3  G5D 49 
G5D H10 H20 H 0 1 N N N 8.924  -13.852 19.722 -3.502  2.433  -0.909 H10 G5D 50 
G5D H11 H21 H 0 1 N N N 7.622  -13.563 21.789 -5.891  1.940  -0.619 H11 G5D 51 
G5D H13 H22 H 0 1 N N N 6.855  -10.526 17.956 -2.500  -1.323 0.885  H13 G5D 52 
G5D H14 H23 H 0 1 N N N 4.117  -11.179 21.516 -7.634  1.448  -0.344 H14 G5D 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G5D N7  C19 TRIP N N 1  
G5D C19 C18 SING N N 2  
G5D C18 C17 SING N N 3  
G5D C17 O2  DOUB N N 4  
G5D C17 N4  SING N N 5  
G5D C5  C6  SING N N 6  
G5D C5  N3  SING N N 7  
G5D C3  C4  DOUB Y N 8  
G5D C3  C2  SING Y N 9  
G5D C4  N2  SING Y N 10 
G5D C6  N4  SING N N 11 
G5D C6  C16 SING N N 12 
G5D N4  C7  SING N N 13 
G5D N3  C2  SING N N 14 
G5D N3  C8  SING N N 15 
G5D C2  N1  DOUB Y N 16 
G5D N2  C1  DOUB Y N 17 
G5D C7  C8  SING N N 18 
G5D C16 C8  SING N N 19 
G5D N1  C1  SING Y N 20 
G5D C1  N5  SING N N 21 
G5D N5  C9  SING N N 22 
G5D C9  C14 DOUB Y N 23 
G5D C9  C10 SING Y N 24 
G5D C14 C13 SING Y N 25 
G5D C10 C11 DOUB Y N 26 
G5D C13 C12 DOUB Y N 27 
G5D C11 C12 SING Y N 28 
G5D C12 C15 SING N N 29 
G5D N6  C15 SING N N 30 
G5D N6  C20 SING N N 31 
G5D C15 O1  DOUB N N 32 
G5D C20 C21 SING N N 33 
G5D C4  H2  SING N N 34 
G5D C7  H6  SING N N 35 
G5D C7  H7  SING N N 36 
G5D C6  H5  SING N N 37 
G5D C13 H12 SING N N 38 
G5D C20 H19 SING N N 39 
G5D C20 H20 SING N N 40 
G5D C21 H23 SING N N 41 
G5D C21 H21 SING N N 42 
G5D C21 H22 SING N N 43 
G5D C8  H8  SING N N 44 
G5D N5  H9  SING N N 45 
G5D C18 H18 SING N N 46 
G5D C18 H17 SING N N 47 
G5D C16 H15 SING N N 48 
G5D C16 H16 SING N N 49 
G5D C3  H1  SING N N 50 
G5D C5  H4  SING N N 51 
G5D C5  H3  SING N N 52 
G5D C10 H10 SING N N 53 
G5D C11 H11 SING N N 54 
G5D C14 H13 SING N N 55 
G5D N6  H14 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G5D SMILES           ACDLabs              12.01 "N4(c1nc(ncc1)Nc2ccc(cc2)C(=O)NCC)C3CN(C(C3)C4)C(CC#N)=O"                                                                                                                                 
G5D InChI            InChI                1.03  "InChI=1S/C21H23N7O2/c1-2-23-20(30)14-3-5-15(6-4-14)25-21-24-10-8-18(26-21)27-12-17-11-16(27)13-28(17)19(29)7-9-22/h3-6,8,10,16-17H,2,7,11-13H2,1H3,(H,23,30)(H,24,25,26)/t16-,17-/m0/s1" 
G5D InChIKey         InChI                1.03  YUJXKTRZTBIDCL-IRXDYDNUSA-N                                                                                                                                                               
G5D SMILES_CANONICAL CACTVS               3.385 "CCNC(=O)c1ccc(Nc2nccc(n2)N3C[C@@H]4C[C@H]3CN4C(=O)CC#N)cc1"                                                                                                                              
G5D SMILES           CACTVS               3.385 "CCNC(=O)c1ccc(Nc2nccc(n2)N3C[CH]4C[CH]3CN4C(=O)CC#N)cc1"                                                                                                                                 
G5D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCNC(=O)c1ccc(cc1)Nc2nccc(n2)N3C[C@@H]4C[C@H]3CN4C(=O)CC#N"                                                                                                                              
G5D SMILES           "OpenEye OEToolkits" 2.0.6 "CCNC(=O)c1ccc(cc1)Nc2nccc(n2)N3CC4CC3CN4C(=O)CC#N"                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G5D "SYSTEMATIC NAME" ACDLabs              12.01 "4-({4-[(1S,4S)-5-(cyanoacetyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyrimidin-2-yl}amino)-N-ethylbenzamide"               
G5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-[[4-[(1~{S},4~{S})-5-(2-cyanoethanoyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyrimidin-2-yl]amino]-~{N}-ethyl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G5D "Create component" 2018-05-04 RCSB 
G5D "Initial release"  2018-08-29 RCSB 
# 
