data_I5D
# 
_chem_comp.id                                    I5D 
_chem_comp.name                                  "2-[6-azanyl-3,5-dicyano-4-[4-(cyclopropylmethoxy)phenyl]pyridin-2-yl]sulfanylethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H17 N5 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-09 
_chem_comp.pdbx_modified_date                    2023-01-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        379.436 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I5D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I5D N1    N1  N 0 1 N N N ? ? ? 7.852  -0.367 0.371  N1    I5D 1  
I5D N3    N2  N 0 1 N N N ? ? ? -1.079 3.766  -0.214 N3    I5D 2  
I5D C5    C1  C 0 1 N N N ? ? ? 5.396  -0.126 0.201  C5    I5D 3  
I5D C6    C2  C 0 1 N N N ? ? ? 6.647  -0.963 0.277  C6    I5D 4  
I5D C8    C3  C 0 1 Y N N ? ? ? 2.059  2.232  -0.001 C8    I5D 5  
I5D C10   C4  C 0 1 Y N N ? ? ? -2.895 -0.848 -1.510 C10   I5D 6  
I5D C13   C5  C 0 1 N N N ? ? ? -7.364 -1.027 0.211  C13   I5D 7  
I5D C15   C6  C 0 1 N N N ? ? ? -8.409 -0.860 1.316  C15   I5D 8  
I5D C17   C7  C 0 1 Y N N ? ? ? -1.998 0.460  0.771  C17   I5D 9  
I5D "C1'" C8  C 0 1 Y N N ? ? ? 2.669  -0.004 0.009  "C1'" I5D 10 
I5D C11   C9  C 0 1 Y N N ? ? ? -3.778 -0.549 -0.479 C11   I5D 11 
I5D C12   C10 C 0 1 N N N ? ? ? -5.938 -0.559 0.511  C12   I5D 12 
I5D C14   C11 C 0 1 N N N ? ? ? -8.447 0.046  0.083  C14   I5D 13 
I5D C16   C12 C 0 1 Y N N ? ? ? -3.325 0.105  0.660  C16   I5D 14 
I5D C18   C13 C 0 1 Y N N ? ? ? 0.693  1.910  -0.107 C18   I5D 15 
I5D C19   C14 C 0 1 N N N ? ? ? -0.295 2.945  -0.167 C19   I5D 16 
I5D "C2'" C15 C 0 1 Y N N ? ? ? 1.328  -0.422 -0.091 "C2'" I5D 17 
I5D "C3'" C16 C 0 1 Y N N ? ? ? 0.313  0.553  -0.154 "C3'" I5D 18 
I5D "C4'" C17 C 0 1 Y N N ? ? ? -1.109 0.165  -0.265 "C4'" I5D 19 
I5D "C5'" C18 C 0 1 Y N N ? ? ? -1.567 -0.497 -1.406 "C5'" I5D 20 
I5D CAA   C19 C 0 1 N N N ? ? ? 1.002  -1.815 -0.135 CAA   I5D 21 
I5D N2    N3  N 0 1 N N N ? ? ? 0.743  -2.921 -0.170 N2    I5D 22 
I5D N9    N4  N 0 1 Y N N ? ? ? 2.979  1.283  0.050  N9    I5D 23 
I5D NAA   N5  N 0 1 N N N ? ? ? 2.444  3.557  0.046  NAA   I5D 24 
I5D O6    O1  O 0 1 N N N ? ? ? 6.569  -2.173 0.254  O6    I5D 25 
I5D OP3   O2  O 0 1 N N N ? ? ? -5.086 -0.897 -0.586 OP3   I5D 26 
I5D S1    S1  S 0 1 N N N ? ? ? 3.951  -1.210 0.083  S1    I5D 27 
I5D H1    H1  H 0 1 N N N ? ? ? 7.914  0.601  0.390  H1    I5D 28 
I5D H2    H2  H 0 1 N N N ? ? ? 8.657  -0.905 0.424  H2    I5D 29 
I5D H3    H3  H 0 1 N N N ? ? ? 5.315  0.490  1.097  H3    I5D 30 
I5D H4    H4  H 0 1 N N N ? ? ? 5.441  0.516  -0.679 H4    I5D 31 
I5D H5    H5  H 0 1 N N N ? ? ? -3.250 -1.361 -2.392 H5    I5D 32 
I5D H6    H6  H 0 1 N N N ? ? ? -7.446 -1.904 -0.431 H6    I5D 33 
I5D H7    H7  H 0 1 N N N ? ? ? -9.178 -1.628 1.401  H7    I5D 34 
I5D H8    H8  H 0 1 N N N ? ? ? -8.081 -0.418 2.257  H8    I5D 35 
I5D H9    H9  H 0 1 N N N ? ? ? -1.648 0.972  1.655  H9    I5D 36 
I5D H10   H10 H 0 1 N N N ? ? ? -5.933 0.521  0.655  H10   I5D 37 
I5D H11   H11 H 0 1 N N N ? ? ? -5.578 -1.048 1.415  H11   I5D 38 
I5D H12   H12 H 0 1 N N N ? ? ? -8.145 1.085  0.212  H12   I5D 39 
I5D H13   H13 H 0 1 N N N ? ? ? -9.242 -0.126 -0.643 H13   I5D 40 
I5D H14   H14 H 0 1 N N N ? ? ? -4.014 0.336  1.459  H14   I5D 41 
I5D H15   H15 H 0 1 N N N ? ? ? -0.881 -0.734 -2.205 H15   I5D 42 
I5D H16   H16 H 0 1 N N N ? ? ? 1.775  4.258  0.005  H16   I5D 43 
I5D H17   H17 H 0 1 N N N ? ? ? 3.384  3.786  0.119  H17   I5D 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I5D C14   C15   SING N N 1  
I5D C14   C13   SING N N 2  
I5D C15   C13   SING N N 3  
I5D C13   C12   SING N N 4  
I5D OP3   C12   SING N N 5  
I5D OP3   C11   SING N N 6  
I5D C16   C11   DOUB Y N 7  
I5D C16   C17   SING Y N 8  
I5D C11   C10   SING Y N 9  
I5D N2    CAA   TRIP N N 10 
I5D C17   "C4'" DOUB Y N 11 
I5D C10   "C5'" DOUB Y N 12 
I5D CAA   "C2'" SING N N 13 
I5D "C4'" "C5'" SING Y N 14 
I5D "C4'" "C3'" SING N N 15 
I5D "C2'" "C3'" DOUB Y N 16 
I5D "C2'" "C1'" SING Y N 17 
I5D "C3'" C18   SING Y N 18 
I5D S1    "C1'" SING N N 19 
I5D S1    C5    SING N N 20 
I5D "C1'" N9    DOUB Y N 21 
I5D C18   C19   SING N N 22 
I5D C18   C8    DOUB Y N 23 
I5D C19   N3    TRIP N N 24 
I5D N1    C6    SING N N 25 
I5D N9    C8    SING Y N 26 
I5D C5    C6    SING N N 27 
I5D C6    O6    DOUB N N 28 
I5D C8    NAA   SING N N 29 
I5D N1    H1    SING N N 30 
I5D N1    H2    SING N N 31 
I5D C5    H3    SING N N 32 
I5D C5    H4    SING N N 33 
I5D C10   H5    SING N N 34 
I5D C13   H6    SING N N 35 
I5D C15   H7    SING N N 36 
I5D C15   H8    SING N N 37 
I5D C17   H9    SING N N 38 
I5D C12   H10   SING N N 39 
I5D C12   H11   SING N N 40 
I5D C14   H12   SING N N 41 
I5D C14   H13   SING N N 42 
I5D C16   H14   SING N N 43 
I5D "C5'" H15   SING N N 44 
I5D NAA   H16   SING N N 45 
I5D NAA   H17   SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I5D InChI            InChI                1.03  "InChI=1S/C19H17N5O2S/c20-7-14-17(12-3-5-13(6-4-12)26-9-11-1-2-11)15(8-21)19(24-18(14)23)27-10-16(22)25/h3-6,11H,1-2,9-10H2,(H2,22,25)(H2,23,24)" 
I5D InChIKey         InChI                1.03  ZTYHZMAZUWOXNC-UHFFFAOYSA-N                                                                                                                       
I5D SMILES_CANONICAL CACTVS               3.385 "NC(=O)CSc1nc(N)c(C#N)c(c2ccc(OCC3CC3)cc2)c1C#N"                                                                                                  
I5D SMILES           CACTVS               3.385 "NC(=O)CSc1nc(N)c(C#N)c(c2ccc(OCC3CC3)cc2)c1C#N"                                                                                                  
I5D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2c(c(nc(c2C#N)SCC(=O)N)N)C#N)OCC3CC3"                                                                                                  
I5D SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2c(c(nc(c2C#N)SCC(=O)N)N)C#N)OCC3CC3"                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           I5D 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[6-azanyl-3,5-dicyano-4-[4-(cyclopropylmethoxy)phenyl]pyridin-2-yl]sulfanylethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I5D "Create component" 2022-06-09 PDBJ 
I5D "Initial release"  2023-01-18 RCSB 
# 
