data_L9D
#

_chem_comp.id                                   L9D
_chem_comp.name                                 "(1S,2R,3S,4S,5S,6R)-2-amino-3,4,5,6-tetrahydroxycyclohexane-1-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C7 H13 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "cyclophellitol-aziridine, open form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-14
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       207.181
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L9D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6NZG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L9D  C08  C1   C  0  1  N  N  S  14.612  -29.353  -29.923   1.199   1.471  -0.247  C08  L9D   1  
L9D  C09  C2   C  0  1  N  N  R  15.194  -29.073  -31.319  -0.299   1.455   0.062  C09  L9D   2  
L9D  C11  C3   C  0  1  N  N  S  14.136  -28.442  -32.253  -0.913   0.154  -0.458  C11  L9D   3  
L9D  C12  C4   C  0  1  N  N  R  13.530  -27.158  -31.640  -0.238  -1.037   0.227  C12  L9D   4  
L9D  C14  C5   C  0  1  N  N  S  12.928  -27.453  -30.272   1.260  -1.021  -0.082  C14  L9D   5  
L9D  C16  C6   C  0  1  N  N  S  14.034  -28.024  -29.377   1.874   0.281   0.438  C16  L9D   6  
L9D  C18  C7   C  0  1  N  N  N  14.756  -28.210  -33.648  -2.389   0.138  -0.154  C18  L9D   7  
L9D  N10  N1   N  0  1  N  N  N  16.360  -28.201  -31.217  -0.501   1.547   1.514  N10  L9D   8  
L9D  O13  O1   O  0  1  N  N  N  12.559  -26.574  -32.468  -0.812  -2.253  -0.258  O13  L9D   9  
L9D  O15  O2   O  0  1  N  N  N  12.430  -26.259  -29.739   1.890  -2.133   0.558  O15  L9D  10  
L9D  O17  O3   O  0  1  N  N  N  13.628  -28.110  -28.030   3.273   0.296   0.150  O17  L9D  11  
L9D  O19  O4   O  0  1  N  N  N  15.881  -27.630  -33.743  -3.138  -0.914  -0.520  O19  L9D  12  
L9D  O20  O5   O  0  1  N  N  N  14.160  -28.604  -34.696  -2.898   1.072   0.419  O20  L9D  13  
L9D  H1   H1   H  0  1  N  N  N  15.439  -29.658  -29.265   1.636   2.399   0.123  H1   L9D  14  
L9D  H3   H3   H  0  1  N  N  N  15.502  -30.034  -31.758  -0.780   2.303  -0.426  H3   L9D  15  
L9D  H4   H4   H  0  1  N  N  N  13.320  -29.170  -32.369  -0.763   0.086  -1.535  H4   L9D  16  
L9D  H5   H5   H  0  1  N  N  N  14.355  -26.445  -31.493  -0.388  -0.969   1.304  H5   L9D  17  
L9D  H6   H6   H  0  1  N  N  N  12.129  -28.201  -30.380   1.410  -1.089  -1.159  H6   L9D  18  
L9D  H7   H7   H  0  1  N  N  N  14.861  -27.300  -29.423   1.724   0.349   1.515  H7   L9D  19  
L9D  H8   H8   H  0  1  N  N  N  17.037  -28.619  -30.611  -0.105   2.399   1.881  H8   L9D  20  
L9D  H9   H9   H  0  1  N  N  N  16.760  -28.072  -32.124  -1.480   1.473   1.748  H9   L9D  21  
L9D  H11  H11  H  0  1  N  N  N  12.216  -25.792  -32.052  -0.431  -3.051   0.134  H11  L9D  22  
L9D  H12  H12  H  0  1  N  N  N  12.051  -26.427  -28.884   2.843  -2.186   0.405  H12  L9D  23  
L9D  H13  H13  H  0  1  N  N  N  14.337  -28.467  -27.507   3.766  -0.432   0.553  H13  L9D  24  
L9D  H14  H14  H  0  1  N  N  N  16.131  -27.571  -34.658  -4.080  -0.879  -0.303  H14  L9D  25  
L9D  O1   O6   O  0  1  N  Y  N  13.712  -30.445  -30.093   1.396   1.383  -1.660  O1   L9D  26  
L9D  H2   H2   H  0  1  N  Y  N  13.318  -30.665  -29.257   2.325   1.387  -1.928  H2   L9D  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L9D  O20  C18  DOUB  N  N   1  
L9D  O19  C18  SING  N  N   2  
L9D  C18  C11  SING  N  N   3  
L9D  O13  C12  SING  N  N   4  
L9D  C11  C12  SING  N  N   5  
L9D  C11  C09  SING  N  N   6  
L9D  C12  C14  SING  N  N   7  
L9D  C09  N10  SING  N  N   8  
L9D  C09  C08  SING  N  N   9  
L9D  C14  O15  SING  N  N  10  
L9D  C14  C16  SING  N  N  11  
L9D  C08  C16  SING  N  N  12  
L9D  C16  O17  SING  N  N  13  
L9D  C08  H1   SING  N  N  14  
L9D  C09  H3   SING  N  N  15  
L9D  C11  H4   SING  N  N  16  
L9D  C12  H5   SING  N  N  17  
L9D  C14  H6   SING  N  N  18  
L9D  C16  H7   SING  N  N  19  
L9D  N10  H8   SING  N  N  20  
L9D  N10  H9   SING  N  N  21  
L9D  O13  H11  SING  N  N  22  
L9D  O15  H12  SING  N  N  23  
L9D  O17  H13  SING  N  N  24  
L9D  O19  H14  SING  N  N  25  
L9D  C08  O1   SING  N  N  26  
L9D  O1   H2   SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L9D  SMILES            ACDLabs               12.01  "C1(C(C(C(C(C1N)C(O)=O)O)O)O)O"  
L9D  InChI             InChI                 1.03   "InChI=1S/C7H13NO6/c8-2-1(7(13)14)3(9)5(11)6(12)4(2)10/h1-6,9-12H,8H2,(H,13,14)/t1-,2+,3+,4-,5-,6-/m0/s1"  
L9D  InChIKey          InChI                 1.03   POIWYXZEYSYIEW-HOZKJCLWSA-N  
L9D  SMILES_CANONICAL  CACTVS                3.385  "N[C@H]1[C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]1C(O)=O"  
L9D  SMILES            CACTVS                3.385  "N[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1C(O)=O"  
L9D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[C@H]1([C@H]([C@@H]([C@H](C([C@@H]1N)O)O)O)O)C(=O)O"  
L9D  SMILES            "OpenEye OEToolkits"  2.0.7  "C1(C(C(C(C(C1O)O)O)O)N)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
L9D  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2R,3S,4S,5S,6R)-2-amino-3,4,5,6-tetrahydroxycyclohexane-1-carboxylic acid"  
L9D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{S},2~{R},4~{S},5~{S},6~{R})-2-azanyl-3,4,5,6-tetrakis(oxidanyl)cyclohexane-1-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L9D  "Create component"    2019-02-14  RCSB  
L9D  "Modify name"         2019-03-01  RCSB  
L9D  "Other modification"  2019-12-11  RCSB  
L9D  "Initial release"     2019-12-18  RCSB  
L9D  "Other modification"  2019-12-18  RCSB  
L9D  "Modify synonyms"     2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     L9D
_pdbx_chem_comp_synonyms.name        "cyclophellitol-aziridine, open form"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
