data_M6D
#

_chem_comp.id                                   M6D
_chem_comp.name                                 6-O-phosphono-beta-D-mannopyranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H13 O9 P"
_chem_comp.mon_nstd_parent_comp_id              BMA
_chem_comp.pdbx_synonyms                        "beta-D-mannose-6-phosphate; 6-O-phosphono-beta-D-mannose; 6-O-phosphono-D-mannose; 6-O-phosphono-mannose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-11-21
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       260.136
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    M6D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2RL8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  M6D  beta-D-mannose-6-phosphate    PDB  ?  
2  M6D  6-O-phosphono-beta-D-mannose  PDB  ?  
3  M6D  6-O-phosphono-D-mannose       PDB  ?  
4  M6D  6-O-phosphono-mannose         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M6D  C1    C1    C  0  1  N  N  R  10.101  16.341  34.525   2.124  -1.502   0.636  C1    M6D   1  
M6D  C2    C2    C  0  1  N  N  S  10.708  16.423  33.093   3.267  -0.626   0.116  C2    M6D   2  
M6D  C3    C3    C  0  1  N  N  S  12.212  16.027  33.164   2.978   0.837   0.465  C3    M6D   3  
M6D  C4    C4    C  0  1  N  N  S  12.962  16.959  34.144   1.623   1.235  -0.128  C4    M6D   4  
M6D  C5    C5    C  0  1  N  N  R  12.305  16.840  35.550   0.544   0.287   0.402  C5    M6D   5  
M6D  C6    C6    C  0  1  N  N  N  12.969  17.780  36.553  -0.802   0.640  -0.233  C6    M6D   6  
M6D  O1    O1    O  0  1  N  Y  N   8.764  16.795  34.520   2.359  -2.862   0.265  O1    M6D   7  
M6D  O2    O2    O  0  1  N  N  N  10.588  17.760  32.594   3.368  -0.767  -1.303  O2    M6D   8  
M6D  O3    O3    O  0  1  N  N  N  12.803  16.117  31.875   4.003   1.670  -0.080  O3    M6D   9  
M6D  O4    O4    O  0  1  N  N  N  14.340  16.582  34.200   1.310   2.576   0.253  O4    M6D  10  
M6D  O5    O5    O  0  1  N  N  N  10.874  17.194  35.448   0.890  -1.059   0.069  O5    M6D  11  
M6D  O6    O6    O  0  1  N  N  N  12.438  17.727  37.881  -1.829  -0.167   0.347  O6    M6D  12  
M6D  P     P     P  0  1  N  N  N  12.325  19.004  38.822  -3.376  -0.062  -0.085  P     M6D  13  
M6D  O1P   O1P   O  0  1  N  N  N  13.681  19.613  39.048  -4.224  -1.201   0.674  O1P   M6D  14  
M6D  O2P   O2P   O  0  1  N  N  N  11.755  18.616  40.174  -3.948   1.389   0.315  O2P   M6D  15  
M6D  O3P   O3P   O  0  1  N  N  N  11.427  20.043  38.191  -3.494  -0.252  -1.548  O3P   M6D  16  
M6D  H1    H1    H  0  1  N  N  N  10.138  15.292  34.853   2.074  -1.426   1.722  H1    M6D  17  
M6D  H2    H2    H  0  1  N  N  N  10.170  15.739  32.420   4.203  -0.934   0.581  H2    M6D  18  
M6D  H3    H3    H  0  1  N  N  N  12.285  14.990  33.524   2.950   0.954   1.549  H3    M6D  19  
M6D  H4    H4    H  0  1  N  N  N  12.899  18.003  33.802   1.668   1.166  -1.215  H4    M6D  20  
M6D  H5    H5    H  0  1  N  N  N  12.429  15.805  35.900   0.473   0.387   1.485  H5    M6D  21  
M6D  H61   H6    H  0  1  N  N  N  14.034  17.509  36.609  -1.023   1.692  -0.056  H61   M6D  22  
M6D  H62   H6A   H  0  1  N  N  N  12.785  18.801  36.188  -0.757   0.454  -1.307  H62   M6D  23  
M6D  HO1   HO1   H  0  1  N  Y  N   8.460  16.897  35.414   1.673  -3.475   0.562  HO1   M6D  24  
M6D  HO2   HO2   H  0  1  N  Y  N  10.561  18.369  33.322   3.546  -1.671  -1.597  HO2   M6D  25  
M6D  HO3   HO3   H  0  1  N  Y  N  12.121  16.137  31.214   4.890   1.469   0.247  HO3   M6D  26  
M6D  HO4   HO4   H  0  1  N  Y  N  14.682  16.498  33.318   1.955   3.231  -0.046  HO4   M6D  27  
M6D  HO1P  HO1P  H  0  0  N  N  N  14.114  19.741  38.212  -5.167  -1.197   0.460  HO1P  M6D  28  
M6D  HO2P  HO2P  H  0  0  N  N  N  12.461  18.535  40.804  -3.902   1.582   1.261  HO2P  M6D  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M6D  C2   C1    SING  N  N   1  
M6D  O1   C1    SING  N  N   2  
M6D  C1   O5    SING  N  N   3  
M6D  C1   H1    SING  N  N   4  
M6D  O2   C2    SING  N  N   5  
M6D  C2   C3    SING  N  N   6  
M6D  C2   H2    SING  N  N   7  
M6D  O3   C3    SING  N  N   8  
M6D  C3   C4    SING  N  N   9  
M6D  C3   H3    SING  N  N  10  
M6D  C4   O4    SING  N  N  11  
M6D  C4   C5    SING  N  N  12  
M6D  C4   H4    SING  N  N  13  
M6D  O5   C5    SING  N  N  14  
M6D  C5   C6    SING  N  N  15  
M6D  C5   H5    SING  N  N  16  
M6D  C6   O6    SING  N  N  17  
M6D  C6   H61   SING  N  N  18  
M6D  C6   H62   SING  N  N  19  
M6D  O1   HO1   SING  N  N  20  
M6D  O2   HO2   SING  N  N  21  
M6D  O3   HO3   SING  N  N  22  
M6D  O4   HO4   SING  N  N  23  
M6D  O6   P     SING  N  N  24  
M6D  O3P  P     DOUB  N  N  25  
M6D  P    O1P   SING  N  N  26  
M6D  P    O2P   SING  N  N  27  
M6D  O1P  HO1P  SING  N  N  28  
M6D  O2P  HO2P  SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M6D  SMILES            ACDLabs               10.04  "O=P(O)(O)OCC1OC(O)C(O)C(O)C1O"  
M6D  SMILES_CANONICAL  CACTVS                3.341  "O[C@@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@@H]1O"  
M6D  SMILES            CACTVS                3.341  "O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]1O"  
M6D  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)OP(=O)(O)O"  
M6D  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(O1)O)O)O)O)OP(=O)(O)O"  
M6D  InChI             InChI                 1.03   "InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5+,6-/m1/s1"  
M6D  InChIKey          InChI                 1.03   NBSCHQHZLSJFNQ-RWOPYEJCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M6D  "SYSTEMATIC NAME"            ACDLabs               10.04  6-O-phosphono-beta-D-mannopyranose  
M6D  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4S,5S,6R)-3,4,5,6-tetrahydroxyoxan-2-yl]methyl dihydrogen phosphate"  
M6D  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    b-D-Manp6PO3  
#
_pdbx_chem_comp_related.comp_id            M6D
_pdbx_chem_comp_related.related_comp_id    BMA
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  M6D  C1   BMA  C1   "Carbohydrate core"  
 2  M6D  C2   BMA  C2   "Carbohydrate core"  
 3  M6D  C3   BMA  C3   "Carbohydrate core"  
 4  M6D  C4   BMA  C4   "Carbohydrate core"  
 5  M6D  C5   BMA  C5   "Carbohydrate core"  
 6  M6D  C6   BMA  C6   "Carbohydrate core"  
 7  M6D  O1   BMA  O1   "Carbohydrate core"  
 8  M6D  O2   BMA  O2   "Carbohydrate core"  
 9  M6D  O3   BMA  O3   "Carbohydrate core"  
10  M6D  O4   BMA  O4   "Carbohydrate core"  
11  M6D  O5   BMA  O5   "Carbohydrate core"  
12  M6D  O6   BMA  O6   "Carbohydrate core"  
13  M6D  H1   BMA  H1   "Carbohydrate core"  
14  M6D  H2   BMA  H2   "Carbohydrate core"  
15  M6D  H3   BMA  H3   "Carbohydrate core"  
16  M6D  H4   BMA  H4   "Carbohydrate core"  
17  M6D  H5   BMA  H5   "Carbohydrate core"  
18  M6D  H61  BMA  H61  "Carbohydrate core"  
19  M6D  H62  BMA  H62  "Carbohydrate core"  
20  M6D  HO1  BMA  HO1  "Carbohydrate core"  
21  M6D  HO2  BMA  HO2  "Carbohydrate core"  
22  M6D  HO3  BMA  HO3  "Carbohydrate core"  
23  M6D  HO4  BMA  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
M6D  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
M6D  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
M6D  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
M6D  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M6D  "Create component"          2007-11-21  RCSB  
M6D  "Modify descriptor"         2011-06-04  RCSB  
M6D  "Other modification"        2020-07-03  RCSB  
M6D  "Modify parent residue"     2020-07-17  RCSB  
M6D  "Modify synonyms"           2020-07-17  RCSB  
M6D  "Modify internal type"      2020-07-17  RCSB  
M6D  "Modify linking type"       2020-07-17  RCSB  
M6D  "Modify atom id"            2020-07-17  RCSB  
M6D  "Modify component atom id"  2020-07-17  RCSB  
M6D  "Modify leaving atom flag"  2020-07-17  RCSB  
##
