data_NDD
# 
_chem_comp.id                                    NDD 
_chem_comp.name                                  2,6-DICARBOXYNAPHTHALENE 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H8 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        216.190 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NDD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1HAC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NDD C1    C1    C 0 1 Y N N N N N 33.957 17.848 4.815  -0.954 -0.004 1.593  C1    NDD 1  
NDD C2    C2    C 0 1 Y N N N N N 33.829 17.040 5.967  0.090  0.000  2.502  C2    NDD 2  
NDD C3    C3    C 0 1 Y N N N N N 33.320 15.754 5.775  1.424  -0.000 2.056  C3    NDD 3  
NDD C4    C4    C 0 1 Y N N N N N 32.974 15.262 4.517  1.714  -0.000 0.730  C4    NDD 4  
NDD C4A   C4A   C 0 1 Y N N N N N 33.103 16.084 3.392  0.674  0.000  -0.218 C4A   NDD 5  
NDD C5    C5    C 0 1 Y N N N N N 32.787 15.580 2.121  0.954  -0.000 -1.593 C5    NDD 6  
NDD C6    C6    C 0 1 Y N N N N N 32.976 16.336 0.959  -0.090 -0.000 -2.502 C6    NDD 7  
NDD C7    C7    C 0 1 Y N N N N N 33.482 17.630 1.115  -1.424 0.000  -2.056 C7    NDD 8  
NDD C8    C8    C 0 1 Y N N N N N 33.769 18.150 2.383  -1.714 0.000  -0.730 C8    NDD 9  
NDD C8A   C8A   C 0 1 Y N N N N N 33.599 17.381 3.537  -0.674 0.000  0.218  C8A   NDD 10 
NDD "C2'" "C2'" C 0 1 N N N N N N 34.236 17.584 7.334  -0.198 0.000  3.951  "C2'" NDD 11 
NDD "O1'" "O1'" O 0 1 N N N N N N 34.645 18.736 7.325  -1.348 0.001  4.341  "O1'" NDD 12 
NDD "O2'" "O2'" O 0 1 N Y N N N N 34.124 16.867 8.447  0.814  0.000  4.839  "O2'" NDD 13 
NDD "C6'" "C6'" C 0 1 N N N N N N 32.636 15.805 -0.420 0.198  0.000  -3.951 "C6'" NDD 14 
NDD "O3'" "O3'" O 0 1 N N N N N N 32.027 14.740 -0.560 1.348  0.000  -4.341 "O3'" NDD 15 
NDD "O4'" "O4'" O 0 1 N N N N N N 33.018 16.553 -1.458 -0.814 0.000  -4.839 "O4'" NDD 16 
NDD H1    H1    H 0 1 N N N N N N 34.348 18.874 4.916  -1.977 -0.008 1.940  H1    NDD 17 
NDD H3    H3    H 0 1 N N N N N N 33.185 15.100 6.653  2.227  -0.000 2.778  H3    NDD 18 
NDD H4    H4    H 0 1 N N N N N N 32.600 14.229 4.412  2.744  -0.000 0.403  H4    NDD 19 
NDD H5    H5    H 0 1 N N N N N N 32.378 14.559 2.032  1.977  0.000  -1.940 H5    NDD 20 
NDD H7    H7    H 0 1 N N N N N N 33.658 18.252 0.221  -2.227 0.000  -2.778 H7    NDD 21 
NDD H8    H8    H 0 1 N N N N N N 34.136 19.186 2.474  -2.744 0.001  -0.403 H8    NDD 22 
NDD HO2   HO2   H 0 1 N N N N N N 34.377 17.205 9.297  0.625  0.000  5.788  HO2   NDD 23 
NDD HO4   HO4   H 0 1 N N N N N N 32.805 16.220 -2.322 -0.625 0.000  -5.788 HO4   NDD 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NDD C1    C2    DOUB Y N 1  
NDD C1    C8A   SING Y N 2  
NDD C1    H1    SING N N 3  
NDD C2    C3    SING Y N 4  
NDD C2    "C2'" SING N N 5  
NDD C3    C4    DOUB Y N 6  
NDD C3    H3    SING N N 7  
NDD C4    C4A   SING Y N 8  
NDD C4    H4    SING N N 9  
NDD C4A   C5    DOUB Y N 10 
NDD C4A   C8A   SING Y N 11 
NDD C5    C6    SING Y N 12 
NDD C5    H5    SING N N 13 
NDD C6    C7    DOUB Y N 14 
NDD C6    "C6'" SING N N 15 
NDD C7    C8    SING Y N 16 
NDD C7    H7    SING N N 17 
NDD C8    C8A   DOUB Y N 18 
NDD C8    H8    SING N N 19 
NDD "C2'" "O1'" DOUB N N 20 
NDD "C2'" "O2'" SING N N 21 
NDD "O2'" HO2   SING N N 22 
NDD "C6'" "O3'" DOUB N N 23 
NDD "C6'" "O4'" SING N N 24 
NDD "O4'" HO4   SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NDD SMILES           ACDLabs              10.04 "O=C(O)c1ccc2c(c1)ccc(C(=O)O)c2"                                                        
NDD SMILES_CANONICAL CACTVS               3.341 "OC(=O)c1ccc2cc(ccc2c1)C(O)=O"                                                          
NDD SMILES           CACTVS               3.341 "OC(=O)c1ccc2cc(ccc2c1)C(O)=O"                                                          
NDD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(cc2c1cc(cc2)C(=O)O)C(=O)O"                                                        
NDD SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc(cc2c1cc(cc2)C(=O)O)C(=O)O"                                                        
NDD InChI            InChI                1.03  "InChI=1S/C12H8O4/c13-11(14)9-3-1-7-5-10(12(15)16)4-2-8(7)6-9/h1-6H,(H,13,14)(H,15,16)" 
NDD InChIKey         InChI                1.03  RXOHFPCZGPKIRD-UHFFFAOYSA-N                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NDD "SYSTEMATIC NAME" ACDLabs              10.04 "naphthalene-2,6-dicarboxylic acid" 
NDD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "naphthalene-2,6-dicarboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NDD "Create component"  1999-07-08 RCSB 
NDD "Modify descriptor" 2011-06-04 RCSB 
NDD "Modify PCM"        2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 NDD LYS None Crosslinker "Amino-acid side chain" "Any position" "C2'" NZ ? ? 
2 NDD LYS None Crosslinker "Amino-acid side chain" "Any position" "C6'" NZ ? ? 
# 
