data_NOD
#

_chem_comp.id                                   NOD
_chem_comp.name                                 N-ETHYLHYDROXY-DOXORUBICIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C29 H33 N O12"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2011-06-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       587.572
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NOD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "not provided"
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       385D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NOD  C1      C1    C  0  1  Y  N  N  15.474  18.291   5.124  ?  ?  ?  C1      NOD   1  
NOD  C2      C2    C  0  1  Y  N  N  16.670  19.011   5.107  ?  ?  ?  C2      NOD   2  
NOD  C3      C3    C  0  1  Y  N  N  17.872  18.280   4.997  ?  ?  ?  C3      NOD   3  
NOD  C4      C4    C  0  1  Y  N  N  17.829  16.891   4.906  ?  ?  ?  C4      NOD   4  
NOD  O4      O4    O  0  1  N  N  N  19.025  16.164   4.808  ?  ?  ?  O4      NOD   5  
NOD  C5      C5    C  0  1  Y  N  N  16.637  16.170   4.943  ?  ?  ?  C5      NOD   6  
NOD  C6      C6    C  0  1  N  N  N  16.587  14.785   4.866  ?  ?  ?  C6      NOD   7  
NOD  O6      O6    O  0  1  N  N  N  17.735  13.988   4.742  ?  ?  ?  O6      NOD   8  
NOD  C7      C7    C  0  1  Y  N  N  15.365  14.135   4.920  ?  ?  ?  C7      NOD   9  
NOD  C8      C8    C  0  1  Y  N  N  15.328  12.747   4.811  ?  ?  ?  C8      NOD  10  
NOD  O8      O8    O  0  1  N  N  N  16.529  12.040   4.723  ?  ?  ?  O8      NOD  11  
NOD  C9      C9    C  0  1  Y  N  N  14.087  12.107   4.817  ?  ?  ?  C9      NOD  12  
NOD  C10     C10   C  0  1  N  N  S  14.135  10.613   4.745  ?  ?  ?  C10     NOD  13  
NOD  O10     O10   O  0  1  N  N  N  14.995  10.210   5.774  ?  ?  ?  O10     NOD  14  
NOD  C11     C11   C  0  1  N  N  N  12.779   9.884   4.608  ?  ?  ?  C11     NOD  15  
NOD  C12     C12   C  0  1  N  N  S  11.709  10.633   5.467  ?  ?  ?  C12     NOD  16  
NOD  O12     O12   O  0  1  N  N  N  11.976  10.602   6.846  ?  ?  ?  O12     NOD  17  
NOD  C13     C13   C  0  1  N  N  N  10.312  10.089   5.146  ?  ?  ?  C13     NOD  18  
NOD  O13     O13   O  0  1  N  N  N   9.777  10.410   3.911  ?  ?  ?  O13     NOD  19  
NOD  C14     C14   C  0  1  N  N  N   9.593   9.307   6.166  ?  ?  ?  C14     NOD  20  
NOD  O14     O14   O  0  1  N  N  N   9.229   8.024   5.628  ?  ?  ?  O14     NOD  21  
NOD  C15     C15   C  0  1  N  N  N  11.601  12.108   4.982  ?  ?  ?  C15     NOD  22  
NOD  C16     C16   C  0  1  Y  N  N  12.900  12.819   4.963  ?  ?  ?  C16     NOD  23  
NOD  C17     C17   C  0  1  Y  N  N  12.958  14.207   5.018  ?  ?  ?  C17     NOD  24  
NOD  O17     O17   O  0  1  N  N  N  11.834  15.005   5.146  ?  ?  ?  O17     NOD  25  
NOD  C18     C18   C  0  1  Y  N  N  14.187  14.864   5.001  ?  ?  ?  C18     NOD  26  
NOD  C19     C19   C  0  1  N  N  N  14.208  16.258   5.073  ?  ?  ?  C19     NOD  27  
NOD  O19     O19   O  0  1  N  N  N  13.100  17.001   5.188  ?  ?  ?  O19     NOD  28  
NOD  C20     C20   C  0  1  Y  N  N  15.453  16.897   5.063  ?  ?  ?  C20     NOD  29  
NOD  C21     C21   C  0  1  N  N  N  20.246  16.928   5.165  ?  ?  ?  C21     NOD  30  
NOD  "C1'"   C1*   C  0  1  N  N  R  15.662   8.979   5.873  ?  ?  ?  "C1'"   NOD  31  
NOD  "C2'"   C2*   C  0  1  N  N  N  16.871   8.986   6.829  ?  ?  ?  "C2'"   NOD  32  
NOD  "C3'"   C3*   C  0  1  N  N  R  16.431   8.742   8.255  ?  ?  ?  "C3'"   NOD  33  
NOD  "C4'"   C4*   C  0  1  N  N  S  15.327   7.720   8.526  ?  ?  ?  "C4'"   NOD  34  
NOD  "O4'"   O4*   O  0  1  N  N  N  15.789   6.340   8.237  ?  ?  ?  "O4'"   NOD  35  
NOD  "C5'"   C5*   C  0  1  N  N  S  14.179   7.946   7.485  ?  ?  ?  "C5'"   NOD  36  
NOD  "O5'"   O5*   O  0  1  N  N  N  14.799   7.852   6.142  ?  ?  ?  "O5'"   NOD  37  
NOD  "C6'"   C6*   C  0  1  N  N  N  13.165   6.806   7.495  ?  ?  ?  "C6'"   NOD  38  
NOD  "N3'"   N3*   N  0  1  N  N  N  16.953   9.703   9.217  ?  ?  ?  "N3'"   NOD  39  
NOD  O16     O16   O  0  1  N  N  N  16.802   7.206  12.138  ?  ?  ?  O16     NOD  40  
NOD  C63     C63   C  0  1  N  N  N  16.167   8.166  11.173  ?  ?  ?  C63     NOD  41  
NOD  C53     C53   C  0  1  N  N  N  17.075   9.288  10.623  ?  ?  ?  C53     NOD  42  
NOD  H1      H1    H  0  1  N  N  N  14.518  18.838   5.187  ?  ?  ?  H1      NOD  43  
NOD  H2      H2    H  0  1  N  N  N  16.665  20.111   5.177  ?  ?  ?  H2      NOD  44  
NOD  H3      H3    H  0  1  N  N  N  18.847  18.795   4.982  ?  ?  ?  H3      NOD  45  
NOD  HO8     HO8   H  0  1  N  N  N  16.503  11.093   4.648  ?  ?  ?  HO8     NOD  46  
NOD  H10     H10   H  0  1  N  N  N  14.551  10.276   3.766  ?  ?  ?  H10     NOD  47  
NOD  H111    1H11  H  0  0  N  N  N  12.464   9.768   3.544  ?  ?  ?  H111    NOD  48  
NOD  H112    2H11  H  0  0  N  N  N  12.850   8.802   4.868  ?  ?  ?  H112    NOD  49  
NOD  HO12    2HO1  H  0  0  N  N  N  11.325  11.057   7.368  ?  ?  ?  HO12    NOD  50  
NOD  H141    1H14  H  0  0  N  N  N  10.175   9.215   7.112  ?  ?  ?  H141    NOD  51  
NOD  H142    2H14  H  0  0  N  N  N   8.712   9.856   6.572  ?  ?  ?  H142    NOD  52  
NOD  HO14    4HO1  H  0  0  N  N  N   8.765   7.519   6.286  ?  ?  ?  HO14    NOD  53  
NOD  H151    1H15  H  0  0  N  N  N  11.107  12.160   3.983  ?  ?  ?  H151    NOD  54  
NOD  H152    2H15  H  0  0  N  N  N  10.852  12.669   5.588  ?  ?  ?  H152    NOD  55  
NOD  HO17    7HO1  H  0  0  N  N  N  11.873  15.953   5.183  ?  ?  ?  HO17    NOD  56  
NOD  H211    1H21  H  0  0  N  N  N  21.196  16.350   5.087  ?  ?  ?  H211    NOD  57  
NOD  H212    2H21  H  0  0  N  N  N  20.309  17.861   4.558  ?  ?  ?  H212    NOD  58  
NOD  H213    3H21  H  0  0  N  N  N  20.143  17.367   6.184  ?  ?  ?  H213    NOD  59  
NOD  "H1'"   H1*   H  0  1  N  N  N  16.065   8.837   4.843  ?  ?  ?  "H1'"   NOD  60  
NOD  "H2'1"  1H2*  H  0  0  N  N  N  17.653   8.259   6.509  ?  ?  ?  "H2'1"  NOD  61  
NOD  "H2'2"  2H2*  H  0  0  N  N  N  17.464   9.925   6.735  ?  ?  ?  "H2'2"  NOD  62  
NOD  "H3'"   H3*   H  0  1  N  N  N  16.838   7.887   8.844  ?  ?  ?  "H3'"   NOD  63  
NOD  "H4'"   H4*   H  0  1  N  N  N  15.018   7.840   9.590  ?  ?  ?  "H4'"   NOD  64  
NOD  "HO4'"  *HO4  H  0  0  N  N  N  15.102   5.704   8.405  ?  ?  ?  "HO4'"  NOD  65  
NOD  "H5'"   H5*   H  0  1  N  N  N  13.684   8.916   7.723  ?  ?  ?  "H5'"   NOD  66  
NOD  "H6'1"  1H6*  H  0  0  N  N  N  12.347   6.966   6.753  ?  ?  ?  "H6'1"  NOD  67  
NOD  "H6'2"  2H6*  H  0  0  N  N  N  13.662   5.820   7.340  ?  ?  ?  "H6'2"  NOD  68  
NOD  "H6'3"  3H6*  H  0  0  N  N  N  12.755   6.637   8.518  ?  ?  ?  "H6'3"  NOD  69  
NOD  "HN3'"  HN3*  H  0  0  N  N  N  16.396  10.556   9.169  ?  ?  ?  "HN3'"  NOD  70  
NOD  H16     H16   H  0  1  N  N  N  16.243   6.515  12.476  ?  ?  ?  H16     NOD  71  
NOD  H631    1H63  H  0  0  N  N  N  15.712   7.601  10.325  ?  ?  ?  H631    NOD  72  
NOD  H632    2H63  H  0  0  N  N  N  15.254   8.612  11.632  ?  ?  ?  H632    NOD  73  
NOD  H531    1H53  H  0  0  N  N  N  18.137   9.012  10.819  ?  ?  ?  H531    NOD  74  
NOD  H532    2H53  H  0  0  N  N  N  16.956  10.188  11.269  ?  ?  ?  H532    NOD  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NOD  C1     C2      DOUB  Y  N   1  
NOD  C1     C20     SING  Y  N   2  
NOD  C1     H1      SING  N  N   3  
NOD  C2     C3      SING  Y  N   4  
NOD  C2     H2      SING  N  N   5  
NOD  C3     C4      DOUB  Y  N   6  
NOD  C3     H3      SING  N  N   7  
NOD  C4     O4      SING  N  N   8  
NOD  C4     C5      SING  Y  N   9  
NOD  O4     C21     SING  N  N  10  
NOD  C5     C6      SING  N  N  11  
NOD  C5     C20     DOUB  Y  N  12  
NOD  C6     O6      DOUB  N  N  13  
NOD  C6     C7      SING  N  N  14  
NOD  C7     C8      DOUB  Y  N  15  
NOD  C7     C18     SING  Y  N  16  
NOD  C8     O8      SING  N  N  17  
NOD  C8     C9      SING  Y  N  18  
NOD  O8     HO8     SING  N  N  19  
NOD  C9     C10     SING  N  N  20  
NOD  C9     C16     DOUB  Y  N  21  
NOD  C10    O10     SING  N  N  22  
NOD  C10    C11     SING  N  N  23  
NOD  C10    H10     SING  N  N  24  
NOD  O10    "C1'"   SING  N  N  25  
NOD  C11    C12     SING  N  N  26  
NOD  C11    H111    SING  N  N  27  
NOD  C11    H112    SING  N  N  28  
NOD  C12    O12     SING  N  N  29  
NOD  C12    C13     SING  N  N  30  
NOD  C12    C15     SING  N  N  31  
NOD  O12    HO12    SING  N  N  32  
NOD  C13    O13     DOUB  N  N  33  
NOD  C13    C14     SING  N  N  34  
NOD  C14    O14     SING  N  N  35  
NOD  C14    H141    SING  N  N  36  
NOD  C14    H142    SING  N  N  37  
NOD  O14    HO14    SING  N  N  38  
NOD  C15    C16     SING  N  N  39  
NOD  C15    H151    SING  N  N  40  
NOD  C15    H152    SING  N  N  41  
NOD  C16    C17     SING  Y  N  42  
NOD  C17    O17     SING  N  N  43  
NOD  C17    C18     DOUB  Y  N  44  
NOD  O17    HO17    SING  N  N  45  
NOD  C18    C19     SING  N  N  46  
NOD  C19    O19     DOUB  N  N  47  
NOD  C19    C20     SING  N  N  48  
NOD  C21    H211    SING  N  N  49  
NOD  C21    H212    SING  N  N  50  
NOD  C21    H213    SING  N  N  51  
NOD  "C1'"  "C2'"   SING  N  N  52  
NOD  "C1'"  "O5'"   SING  N  N  53  
NOD  "C1'"  "H1'"   SING  N  N  54  
NOD  "C2'"  "C3'"   SING  N  N  55  
NOD  "C2'"  "H2'1"  SING  N  N  56  
NOD  "C2'"  "H2'2"  SING  N  N  57  
NOD  "C3'"  "C4'"   SING  N  N  58  
NOD  "C3'"  "N3'"   SING  N  N  59  
NOD  "C3'"  "H3'"   SING  N  N  60  
NOD  "C4'"  "O4'"   SING  N  N  61  
NOD  "C4'"  "C5'"   SING  N  N  62  
NOD  "C4'"  "H4'"   SING  N  N  63  
NOD  "O4'"  "HO4'"  SING  N  N  64  
NOD  "C5'"  "O5'"   SING  N  N  65  
NOD  "C5'"  "C6'"   SING  N  N  66  
NOD  "C5'"  "H5'"   SING  N  N  67  
NOD  "C6'"  "H6'1"  SING  N  N  68  
NOD  "C6'"  "H6'2"  SING  N  N  69  
NOD  "C6'"  "H6'3"  SING  N  N  70  
NOD  "N3'"  C53     SING  N  N  71  
NOD  "N3'"  "HN3'"  SING  N  N  72  
NOD  O16    C63     SING  N  N  73  
NOD  O16    H16     SING  N  N  74  
NOD  C63    C53     SING  N  N  75  
NOD  C63    H631    SING  N  N  76  
NOD  C63    H632    SING  N  N  77  
NOD  C53    H531    SING  N  N  78  
NOD  C53    H532    SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NOD  SMILES            ACDLabs               10.04  "O=C2c1c(O)c5c(c(O)c1C(=O)c3cccc(OC)c23)CC(O)(C(=O)CO)CC5OC4OC(C(O)C(NCCO)C4)C"  
NOD  SMILES_CANONICAL  CACTVS                3.341  "COc1cccc2C(=O)c3c(O)c4C[C@](O)(C[C@H](O[C@H]5C[C@@H](NCCO)[C@H](O)[C@H](C)O5)c4c(O)c3C(=O)c12)C(=O)CO"  
NOD  SMILES            CACTVS                3.341  "COc1cccc2C(=O)c3c(O)c4C[C](O)(C[CH](O[CH]5C[CH](NCCO)[CH](O)[CH](C)O5)c4c(O)c3C(=O)c12)C(=O)CO"  
NOD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1[C@H](C(C[C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)CO)O)NCCO)O"  
NOD  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(CC(O1)OC2CC(Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)CO)O)NCCO)O"  
NOD  InChI             InChI                 1.03   "InChI=1S/C29H33NO12/c1-12-24(34)15(30-6-7-31)8-19(41-12)42-17-10-29(39,18(33)11-32)9-14-21(17)28(38)23-22(26(14)36)25(35)13-4-3-5-16(40-2)20(13)27(23)37/h3-5,12,15,17,19,24,30-32,34,36,38-39H,6-11H2,1-2H3/t12-,15+,17-,19-,24+,29-/m0/s1"  
NOD  InChIKey          InChI                 1.03   XZJOMGCCXRRFJX-MIDWVNFUSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NOD  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1S,3S)-3,5,12-trihydroxy-3-(hydroxyacetyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 2,3,6-trideoxy-3-[(2-hydroxyethyl)amino]-alpha-L-xylo-hexopyranoside"  
NOD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(7S,9S)-6,9,11-trihydroxy-9-(2-hydroxyethanoyl)-7-[(2R,5S,6S)-5-hydroxy-4-(2-hydroxyethylamino)-6-methyl-oxan-2-yl]oxy-4-methoxy-8,10-dihydro-7H-tetracene-5,12-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NOD  "Create component"   1999-07-08  RCSB  
NOD  "Modify descriptor"  2011-06-04  RCSB  
##
