data_R1D
#

_chem_comp.id                                   R1D
_chem_comp.name                                 "5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H18 F3 N3 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-23
_chem_comp.pdbx_modified_date                   2021-02-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       449.380
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R1D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VL3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R1D  C01  C1   C  0  1  N  N  N   9.422  40.624  -11.413  -6.278   0.339   2.919  C01  R1D   1  
R1D  C03  C2   C  0  1  Y  N  N  11.654  40.715  -12.120  -6.201   0.296   0.542  C03  R1D   2  
R1D  C04  C3   C  0  1  Y  N  N  12.018  41.905  -12.731  -4.822   0.400   0.640  C04  R1D   3  
R1D  C05  C4   C  0  1  Y  N  N  13.284  42.432  -12.527  -4.048   0.431  -0.504  C05  R1D   4  
R1D  C06  C5   C  0  1  N  N  N  13.691  43.749  -13.195  -2.549   0.544  -0.396  C06  R1D   5  
R1D  C07  C6   C  0  1  N  N  N  13.767  43.709  -14.721  -1.936  -0.857  -0.327  C07  R1D   6  
R1D  C09  C7   C  0  1  N  N  N  14.986  41.927  -16.003   0.277  -1.860  -0.146  C09  R1D   7  
R1D  C11  C8   C  0  1  N  N  N  15.039  40.487  -16.507   1.749  -1.750  -0.039  C11  R1D   8  
R1D  C12  C9   C  0  1  N  N  N  15.738  40.139  -17.777   2.532  -2.893   0.032  C12  R1D   9  
R1D  C14  C10  C  0  1  N  N  N  15.762  38.719  -18.235   3.986  -2.726   0.138  C14  R1D  10  
R1D  C17  C11  C  0  1  N  N  N  14.416  38.045  -16.184   3.634  -0.401   0.083  C17  R1D  11  
R1D  C19  C12  C  0  1  Y  N  N  13.720  36.979  -15.338   4.203   0.963   0.102  C19  R1D  12  
R1D  C20  C13  C  0  1  Y  N  N  12.391  37.159  -14.995   5.583   1.145   0.207  C20  R1D  13  
R1D  C21  C14  C  0  1  Y  N  N  11.737  36.212  -14.225   6.108   2.421   0.224  C21  R1D  14  
R1D  C22  C15  C  0  1  Y  N  N  12.413  35.082  -13.798   5.270   3.518   0.137  C22  R1D  15  
R1D  C23  C16  C  0  1  Y  N  N  13.744  34.900  -14.139   3.901   3.345   0.032  C23  R1D  16  
R1D  C24  C17  C  0  1  Y  N  N  14.402  35.847  -14.907   3.364   2.074   0.009  C24  R1D  17  
R1D  C25  C18  C  0  1  N  N  N  15.869  35.630  -15.275   1.873   1.887  -0.110  C25  R1D  18  
R1D  C29  C19  C  0  1  Y  N  N  14.180  41.771  -11.699  -4.646   0.359  -1.749  C29  R1D  19  
R1D  C30  C20  C  0  1  Y  N  N  13.815  40.582  -11.087  -6.020   0.256  -1.854  C30  R1D  20  
R1D  C31  C21  C  0  1  Y  N  N  12.552  40.055  -11.297  -6.802   0.224  -0.711  C31  R1D  21  
R1D  F26  F1   F  0  1  N  N  N  16.009  35.633  -16.633   1.398   1.199   1.011  F26  R1D  22  
R1D  F27  F2   F  0  1  N  N  N  16.289  34.426  -14.796   1.250   3.137  -0.188  F27  R1D  23  
R1D  F28  F3   F  0  1  N  N  N  16.630  36.624  -14.731   1.587   1.151  -1.265  F28  R1D  24  
R1D  N08  N1   N  0  1  N  N  N  13.843  42.346  -15.211  -0.479  -0.747  -0.221  N08  R1D  25  
R1D  N16  N2   N  0  1  N  N  N  15.107  37.690  -17.451   4.480  -1.469   0.159  N16  R1D  26  
R1D  N18  N3   N  0  1  N  N  N  14.388  39.454  -15.726   2.335  -0.543  -0.016  N18  R1D  27  
R1D  O02  O1   O  0  1  N  N  N  10.379  40.182  -12.332  -6.963   0.260   1.667  O02  R1D  28  
R1D  O10  O2   O  0  1  N  N  N  15.858  42.689  -16.245  -0.250  -2.955  -0.166  O10  R1D  29  
R1D  O13  O3   O  0  1  N  N  N  16.366  41.135  -18.534   1.970  -4.128   0.007  O13  R1D  30  
R1D  O15  O4   O  0  1  N  N  N  16.313  38.428  -19.241   4.725  -3.692   0.204  O15  R1D  31  
R1D  O32  O5   O  0  1  N  N  N  12.181  38.853  -10.679  -8.154   0.122  -0.812  O32  R1D  32  
R1D  H1   H1   H  0  1  N  N  N   8.450  40.163  -11.644  -5.585  -0.499   3.007  H1   R1D  33  
R1D  H2   H2   H  0  1  N  N  N   9.730  40.338  -10.397  -5.723   1.276   2.971  H2   R1D  34  
R1D  H3   H3   H  0  1  N  N  N   9.333  41.719  -11.475  -7.001   0.299   3.733  H3   R1D  35  
R1D  H4   H4   H  0  1  N  N  N  11.315  42.422  -13.367  -4.353   0.456   1.611  H4   R1D  36  
R1D  H5   H5   H  0  1  N  N  N  14.683  44.032  -12.812  -2.160   1.068  -1.268  H5   R1D  37  
R1D  H6   H6   H  0  1  N  N  N  12.955  44.516  -12.911  -2.291   1.098   0.507  H6   R1D  38  
R1D  H7   H7   H  0  1  N  N  N  14.662  44.258  -15.049  -2.326  -1.381   0.546  H7   R1D  39  
R1D  H8   H8   H  0  1  N  N  N  12.869  44.189  -15.137  -2.194  -1.411  -1.229  H8   R1D  40  
R1D  H9   H9   H  0  1  N  N  N  11.863  38.040  -15.329   6.239   0.290   0.276  H9   R1D  41  
R1D  H10  H10  H  0  1  N  N  N  10.700  36.355  -13.958   7.175   2.564   0.305  H10  R1D  42  
R1D  H11  H11  H  0  1  N  N  N  11.903  34.342  -13.199   5.686   4.515   0.150  H11  R1D  43  
R1D  H12  H12  H  0  1  N  N  N  14.270  34.018  -13.805   3.252   4.205  -0.036  H12  R1D  44  
R1D  H13  H13  H  0  1  N  N  N  15.164  42.184  -11.531  -4.037   0.383  -2.641  H13  R1D  45  
R1D  H14  H14  H  0  1  N  N  N  14.516  40.067  -10.447  -6.485   0.199  -2.828  H14  R1D  46  
R1D  H15  H15  H  0  1  N  N  N  13.111  41.697  -15.004  -0.058   0.127  -0.205  H15  R1D  47  
R1D  H16  H16  H  0  1  N  N  N  15.120  36.740  -17.763   5.437  -1.325   0.228  H16  R1D  48  
R1D  H17  H17  H  0  1  N  N  N  16.759  40.746  -19.306   2.608  -4.852   0.062  H17  R1D  49  
R1D  H18  H18  H  0  1  N  N  N  12.903  38.531  -10.153  -8.611   0.973  -0.861  H18  R1D  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R1D  O15  C14  DOUB  N  N   1  
R1D  O13  C12  SING  N  N   2  
R1D  C14  C12  SING  N  N   3  
R1D  C14  N16  SING  N  N   4  
R1D  C12  C11  DOUB  N  N   5  
R1D  N16  C17  SING  N  N   6  
R1D  F26  C25  SING  N  N   7  
R1D  C11  C09  SING  N  N   8  
R1D  C11  N18  SING  N  N   9  
R1D  O10  C09  DOUB  N  N  10  
R1D  C17  N18  DOUB  N  N  11  
R1D  C17  C19  SING  N  N  12  
R1D  C09  N08  SING  N  N  13  
R1D  C19  C20  DOUB  Y  N  14  
R1D  C19  C24  SING  Y  N  15  
R1D  C25  C24  SING  N  N  16  
R1D  C25  F27  SING  N  N  17  
R1D  C25  F28  SING  N  N  18  
R1D  N08  C07  SING  N  N  19  
R1D  C20  C21  SING  Y  N  20  
R1D  C24  C23  DOUB  Y  N  21  
R1D  C07  C06  SING  N  N  22  
R1D  C21  C22  DOUB  Y  N  23  
R1D  C23  C22  SING  Y  N  24  
R1D  C06  C05  SING  N  N  25  
R1D  C04  C05  DOUB  Y  N  26  
R1D  C04  C03  SING  Y  N  27  
R1D  C05  C29  SING  Y  N  28  
R1D  O02  C03  SING  N  N  29  
R1D  O02  C01  SING  N  N  30  
R1D  C03  C31  DOUB  Y  N  31  
R1D  C29  C30  DOUB  Y  N  32  
R1D  C31  C30  SING  Y  N  33  
R1D  C31  O32  SING  N  N  34  
R1D  C01  H1   SING  N  N  35  
R1D  C01  H2   SING  N  N  36  
R1D  C01  H3   SING  N  N  37  
R1D  C04  H4   SING  N  N  38  
R1D  C06  H5   SING  N  N  39  
R1D  C06  H6   SING  N  N  40  
R1D  C07  H7   SING  N  N  41  
R1D  C07  H8   SING  N  N  42  
R1D  C20  H9   SING  N  N  43  
R1D  C21  H10  SING  N  N  44  
R1D  C22  H11  SING  N  N  45  
R1D  C23  H12  SING  N  N  46  
R1D  C29  H13  SING  N  N  47  
R1D  C30  H14  SING  N  N  48  
R1D  N08  H15  SING  N  N  49  
R1D  N16  H16  SING  N  N  50  
R1D  O13  H17  SING  N  N  51  
R1D  O32  H18  SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R1D  SMILES            ACDLabs               12.01  "COc1c(ccc(c1)CCNC(C=3N=C(c2ccccc2C(F)(F)F)NC(C=3O)=O)=O)O"  
R1D  InChI             InChI                 1.03   "InChI=1S/C21H18F3N3O5/c1-32-15-10-11(6-7-14(15)28)8-9-25-19(30)16-17(29)20(31)27-18(26-16)12-4-2-3-5-13(12)21(22,23)24/h2-7,10,28-29H,8-9H2,1H3,(H,25,30)(H,26,27,31)"  
R1D  InChIKey          InChI                 1.03   ZKWBUWGFQUVQAP-UHFFFAOYSA-N  
R1D  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C(F)(F)F)ccc1O"  
R1D  SMILES            CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C(F)(F)F)ccc1O"  
R1D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1cc(ccc1O)CCNC(=O)C2=C(C(=O)NC(=N2)c3ccccc3C(F)(F)F)O"  
R1D  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1cc(ccc1O)CCNC(=O)C2=C(C(=O)NC(=N2)c3ccccc3C(F)(F)F)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R1D  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide"  
R1D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[2-(3-methoxy-4-oxidanyl-phenyl)ethyl]-5-oxidanyl-6-oxidanylidene-2-[2-(trifluoromethyl)phenyl]-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R1D  "Create component"  2020-01-23  RCSB  
R1D  "Initial release"   2021-02-10  RCSB  
##
