data_RDD
# 
_chem_comp.id                                    RDD 
_chem_comp.name                                  1-beta-D-ribofuranosyl-1,3,5-triazinane-2,4,6-trione 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H11 N3 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2007-11-16 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        261.189 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RDD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3BD6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RDD C2     C2   C 0 1 N N N 32.140 1.546  51.834 -1.940 -0.665 1.006  C2     RDD 1  
RDD C6     C6   C 0 1 N N N 29.878 1.901  52.685 -1.291 0.709  -0.766 C6     RDD 2  
RDD C4     C4   C 0 1 N N N 31.133 3.757  51.730 -3.552 0.489  -0.227 C4     RDD 3  
RDD O6     O6   O 0 1 N N N 28.836 1.504  53.210 -0.416 1.190  -1.459 O6     RDD 4  
RDD N5     N5   N 0 1 N N N 29.969 3.258  52.329 -2.582 1.017  -1.000 N5     RDD 5  
RDD O4     O4   O 0 1 N N N 31.206 4.944  51.422 -4.716 0.767  -0.438 O4     RDD 6  
RDD N3     N3   N 0 1 N N N 32.214 2.902  51.483 -3.231 -0.357 0.773  N3     RDD 7  
RDD O2     O2   O 0 1 N N N 33.109 0.822  51.605 -1.651 -1.428 1.907  O2     RDD 8  
RDD N1     N1   N 0 1 N N N 30.972 1.026  52.442 -0.970 -0.132 0.237  N1     RDD 9  
RDD "C1'"  C1*  C 0 1 N N R 30.919 -0.431 52.801 0.433  -0.467 0.491  "C1'"  RDD 10 
RDD "O4'"  O4*  O 0 1 N N N 29.729 -1.057 52.238 1.216  0.735  0.651  "O4'"  RDD 11 
RDD "C4'"  C4*  C 0 1 N N R 29.523 -2.237 53.038 2.581  0.337  0.398  "C4'"  RDD 12 
RDD "C5'"  C5*  C 0 1 N N N 28.109 -2.824 52.824 3.432  1.555  0.032  "C5'"  RDD 13 
RDD "O5'"  O5*  O 0 1 N N N 27.129 -1.784 52.711 3.536  2.421  1.163  "O5'"  RDD 14 
RDD "C3'"  C3*  C 0 1 N N S 29.724 -1.727 54.469 2.493  -0.636 -0.798 "C3'"  RDD 15 
RDD "O3'"  O3*  O 0 1 N N N 30.125 -2.805 55.324 3.434  -1.701 -0.647 "O3'"  RDD 16 
RDD "C2'"  C2*  C 0 1 N N R 30.855 -0.700 54.319 1.047  -1.178 -0.735 "C2'"  RDD 17 
RDD "O2'"  O2*  O 0 1 N N N 32.103 -1.247 54.762 1.051  -2.594 -0.544 "O2'"  RDD 18 
RDD HN5    HN5  H 0 1 N N N 29.198 3.871  52.504 -2.813 1.622  -1.722 HN5    RDD 19 
RDD HN3    HN3  H 0 1 N N N 33.043 3.260  51.054 -3.930 -0.744 1.323  HN3    RDD 20 
RDD "H1'"  H1*  H 0 1 N N N 31.852 -0.847 52.394 0.518  -1.096 1.378  "H1'"  RDD 21 
RDD "H4'"  H4*  H 0 1 N N N 30.206 -3.060 52.782 2.997  -0.167 1.270  "H4'"  RDD 22 
RDD "H5'"  H5*  H 0 1 N N N 28.106 -3.419 51.899 4.427  1.226  -0.267 "H5'"  RDD 23 
RDD "H5'A" H5*A H 0 0 N N N 27.855 -3.451 53.692 2.963  2.091  -0.794 "H5'A" RDD 24 
RDD "HO5'" HO5* H 0 0 N N N 26.912 -1.457 53.576 4.063  3.216  1.003  "HO5'" RDD 25 
RDD "H3'"  H3*  H 0 1 N N N 28.814 -1.300 54.916 2.664  -0.107 -1.735 "H3'"  RDD 26 
RDD "HO3'" HO3* H 0 0 N N N 30.214 -3.600 54.812 4.356  -1.411 -0.619 "HO3'" RDD 27 
RDD "H2'"  H2*  H 0 1 N N N 30.673 0.206  54.915 0.501  -0.916 -1.641 "H2'"  RDD 28 
RDD "HO2'" HO2* H 0 0 N N N 32.679 -1.368 54.016 1.426  -3.090 -1.284 "HO2'" RDD 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RDD C2    N3     SING N N 1  
RDD C2    O2     DOUB N N 2  
RDD C2    N1     SING N N 3  
RDD C6    O6     DOUB N N 4  
RDD C6    N5     SING N N 5  
RDD C6    N1     SING N N 6  
RDD C4    N5     SING N N 7  
RDD C4    O4     DOUB N N 8  
RDD C4    N3     SING N N 9  
RDD N1    "C1'"  SING N N 10 
RDD "C1'" "O4'"  SING N N 11 
RDD "C1'" "C2'"  SING N N 12 
RDD "O4'" "C4'"  SING N N 13 
RDD "C4'" "C5'"  SING N N 14 
RDD "C4'" "C3'"  SING N N 15 
RDD "C5'" "O5'"  SING N N 16 
RDD "C3'" "O3'"  SING N N 17 
RDD "C3'" "C2'"  SING N N 18 
RDD "C2'" "O2'"  SING N N 19 
RDD N5    HN5    SING N N 20 
RDD N3    HN3    SING N N 21 
RDD "C1'" "H1'"  SING N N 22 
RDD "C4'" "H4'"  SING N N 23 
RDD "C5'" "H5'"  SING N N 24 
RDD "C5'" "H5'A" SING N N 25 
RDD "O5'" "HO5'" SING N N 26 
RDD "C3'" "H3'"  SING N N 27 
RDD "O3'" "HO3'" SING N N 28 
RDD "C2'" "H2'"  SING N N 29 
RDD "O2'" "HO2'" SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RDD SMILES           ACDLabs              10.04 "O=C1N(C(=O)NC(=O)N1)C2OC(C(O)C2O)CO"                                                                                         
RDD SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C(=O)NC(=O)NC2=O"                                                                          
RDD SMILES           CACTVS               3.341 "OC[CH]1O[CH]([CH](O)[CH]1O)N2C(=O)NC(=O)NC2=O"                                                                               
RDD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@H]([C@@H](O1)N2C(=O)NC(=O)NC2=O)O)O)O"                                                                     
RDD SMILES           "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(O1)N2C(=O)NC(=O)NC2=O)O)O)O"                                                                                       
RDD InChI            InChI                1.03  "InChI=1S/C8H11N3O7/c12-1-2-3(13)4(14)5(18-2)11-7(16)9-6(15)10-8(11)17/h2-5,12-14H,1H2,(H2,9,10,15,16,17)/t2-,3-,4-,5-/m1/s1" 
RDD InChIKey         InChI                1.03  DKOBRNXETUUICC-TXICZTDVSA-N                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RDD "SYSTEMATIC NAME" ACDLabs              10.04 1-beta-D-ribofuranosyl-1,3,5-triazinane-2,4,6-trione                                         
RDD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,3,5-triazinane-2,4,6-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RDD "Create component"  2007-11-16 PDBJ 
RDD "Modify descriptor" 2011-06-04 RCSB 
# 
