data_SRD
# 
_chem_comp.id                                    SRD 
_chem_comp.name                                  "D-1-NAPHTHYL-2-ACETAMIDO-ETHANE BORONIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H17 B N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        274.100 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SRD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4VGC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SRD C1     C1     C 0  1 Y N N N N N 28.364 1.861  39.965 -1.037 -0.573 0.908  C1     SRD 1  
SRD C2     C2     C 0  1 Y N N N N N 27.835 2.915  40.690 -1.948 0.366  0.396  C2     SRD 2  
SRD C3     C3     C 0  1 Y N N N N N 27.921 2.931  42.110 -3.187 -0.082 -0.128 C3     SRD 3  
SRD C4     C4     C 0  1 Y N N N N N 28.548 1.894  42.783 -3.484 -1.455 -0.116 C4     SRD 4  
SRD C5     C5     C 0  1 Y N N N N N 29.086 0.838  42.065 -2.579 -2.335 0.393  C5     SRD 5  
SRD C6     C6     C 0  1 Y N N N N N 28.991 0.827  40.661 -1.359 -1.896 0.904  C6     SRD 6  
SRD C7     C7     C 0  1 Y N N N N N 27.231 3.972  40.038 -1.648 1.739  0.377  C7     SRD 7  
SRD C8     C8     C 0  1 Y N N N N N 26.711 5.033  40.766 -2.553 2.619  -0.132 C8     SRD 8  
SRD C9     C9     C 0  1 Y N N N N N 26.791 5.041  42.167 -3.773 2.179  -0.642 C9     SRD 9  
SRD C10    C10    C 0  1 Y N N N N N 27.391 4.000  42.835 -4.095 0.857  -0.646 C10    SRD 10 
SRD "C7'"  "C7'"  C 0  1 N N N N N N 28.245 1.819  38.466 0.287  -0.118 1.464  "C7'"  SRD 11 
SRD "C8'"  "C8'"  C 0  1 N N S N N N 29.525 2.206  37.734 1.201  0.317  0.317  "C8'"  SRD 12 
SRD "C9'"  "C9'"  C 0  1 N N N N N N 32.875 0.484  38.194 4.857  1.366  0.711  "C9'"  SRD 13 
SRD C      C      C 0  1 N N N N N N 31.840 1.581  38.058 3.547  0.939  0.102  C      SRD 14 
SRD N      N      N 0  1 N N N N N N 30.612 1.252  37.682 2.436  0.883  0.864  N      SRD 15 
SRD O      O      O 0  1 N N N N N N 32.155 2.752  38.339 3.491  0.646  -1.074 O      SRD 16 
SRD O1B    O1B    O 0  1 N N N N N N 29.009 1.305  35.453 2.674  -1.560 -0.108 O1B    SRD 17 
SRD O2B    O2B    O 0  1 N Y N N N N 30.233 3.186  35.353 0.507  -1.830 -0.571 O2B    SRD 18 
SRD O3B    O3B    O 0  1 N N N N N N 27.792 3.078  35.955 1.776  -0.538 -1.877 O3B    SRD 19 
SRD B      B      B -1 1 N N N N N N 29.074 2.546  36.254 1.552  -0.949 -0.593 B      SRD 20 
SRD H4     H4     H 0  1 N N N N N N 28.618 1.909  43.883 -4.425 -1.810 -0.509 H4     SRD 21 
SRD H5     H5     H 0  1 N N N N N N 29.584 0.015  42.605 -2.810 -3.390 0.401  H5     SRD 22 
SRD H6     H6     H 0  1 N N N N N N 29.419 -0.014 40.090 -0.659 -2.615 1.302  H6     SRD 23 
SRD H7     H7     H 0  1 N N N N N N 27.164 3.968  38.937 -0.706 2.094  0.769  H7     SRD 24 
SRD H8     H8     H 0  1 N N N N N N 26.233 5.870  40.230 -2.321 3.674  -0.140 H8     SRD 25 
SRD H9     H9     H 0  1 N N N N N N 26.375 5.878  42.752 -4.473 2.899  -1.040 H9     SRD 26 
SRD H10    H10    H 0  1 N N N N N N 27.446 4.022  43.936 -5.044 0.531  -1.046 H10    SRD 27 
SRD "H7'1" "1H7'" H 0  0 N N N N N N 27.887 0.818  38.128 0.754  -0.939 2.009  "H7'1" SRD 28 
SRD "H7'2" "2H7'" H 0  0 N N N N N N 27.391 2.448  38.122 0.128  0.722  2.140  "H7'2" SRD 29 
SRD "H8'"  "H8'"  H 0  1 N N N N N N 29.971 3.042  38.320 0.693  1.068  -0.287 "H8'"  SRD 30 
SRD "H9'1" "1H9'" H 0  0 N N N N N N 33.907 0.760  38.510 4.963  2.448  0.624  "H9'1" SRD 31 
SRD "H9'2" "2H9'" H 0  0 N N N N N N 32.483 -0.299 38.884 4.878  1.083  1.763  "H9'2" SRD 32 
SRD "H9'3" "3H9'" H 0  0 N N N N N N 32.930 -0.082 37.235 5.678  0.877  0.187  "H9'3" SRD 33 
SRD HN     HN     H 0  1 N N N N N N 30.506 0.289  37.361 2.455  1.218  1.774  HN     SRD 34 
SRD HOB1   1HOB   H 0  0 N N N N N N 28.738 1.508  34.565 2.448  -1.908 0.766  HOB1   SRD 35 
SRD HOB2   2HOB   H 0  0 N N N N N N 29.962 3.389  34.465 0.760  -2.577 -1.131 HOB2   SRD 36 
SRD HOB3   3HOB   H 0  0 N N N N N N 27.521 3.281  35.067 0.962  -0.113 -2.180 HOB3   SRD 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SRD C1    C2     DOUB Y N 1  
SRD C1    C6     SING Y N 2  
SRD C1    "C7'"  SING N N 3  
SRD C2    C3     SING Y N 4  
SRD C2    C7     SING Y N 5  
SRD C3    C4     DOUB Y N 6  
SRD C3    C10    SING Y N 7  
SRD C4    C5     SING Y N 8  
SRD C4    H4     SING N N 9  
SRD C5    C6     DOUB Y N 10 
SRD C5    H5     SING N N 11 
SRD C6    H6     SING N N 12 
SRD C7    C8     DOUB Y N 13 
SRD C7    H7     SING N N 14 
SRD C8    C9     SING Y N 15 
SRD C8    H8     SING N N 16 
SRD C9    C10    DOUB Y N 17 
SRD C9    H9     SING N N 18 
SRD C10   H10    SING N N 19 
SRD "C7'" "C8'"  SING N N 20 
SRD "C7'" "H7'1" SING N N 21 
SRD "C7'" "H7'2" SING N N 22 
SRD "C8'" N      SING N N 23 
SRD "C8'" B      SING N N 24 
SRD "C8'" "H8'"  SING N N 25 
SRD "C9'" C      SING N N 26 
SRD "C9'" "H9'1" SING N N 27 
SRD "C9'" "H9'2" SING N N 28 
SRD "C9'" "H9'3" SING N N 29 
SRD C     N      SING N N 30 
SRD C     O      DOUB N N 31 
SRD N     HN     SING N N 32 
SRD O1B   B      SING N N 33 
SRD O1B   HOB1   SING N N 34 
SRD O2B   B      SING N N 35 
SRD O2B   HOB2   SING N N 36 
SRD O3B   B      SING N N 37 
SRD O3B   HOB3   SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SRD SMILES           ACDLabs              10.04 "O=C(NC([B-](O)(O)O)Cc2cccc1ccccc12)C"                                                                                          
SRD SMILES_CANONICAL CACTVS               3.341 "CC(=O)N[C@H](Cc1cccc2ccccc12)[B-](O)(O)O"                                                                                      
SRD SMILES           CACTVS               3.341 "CC(=O)N[CH](Cc1cccc2ccccc12)[B-](O)(O)O"                                                                                       
SRD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[B-]([C@@H](Cc1cccc2c1cccc2)NC(=O)C)(O)(O)O"                                                                                   
SRD SMILES           "OpenEye OEToolkits" 1.5.0 "[B-](C(Cc1cccc2c1cccc2)NC(=O)C)(O)(O)O"                                                                                        
SRD InChI            InChI                1.03  "InChI=1S/C14H17BNO4/c1-10(17)16-14(15(18,19)20)9-12-7-4-6-11-5-2-3-8-13(11)12/h2-8,14,18-20H,9H2,1H3,(H,16,17)/q-1/t14-/m1/s1" 
SRD InChIKey         InChI                1.03  XDFLCBUAVBYWFW-CQSZACIVSA-N                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SRD "SYSTEMATIC NAME" ACDLabs              10.04 "[(1S)-1-(acetylamino)-2-naphthalen-1-ylethyl](trihydroxy)borate(1-)" 
SRD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1S)-1-acetamido-2-naphthalen-1-yl-ethyl]-trihydroxy-boron"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SRD "Create component"  1999-07-08 RCSB 
SRD "Modify descriptor" 2011-06-04 RCSB 
SRD "Modify PCM"        2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 SRD HIS None "Covalent chemical modification" "Amino-acid side chain" "Any position" B NE2 ? ? 
2 SRD SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" B OG  ? ? 
# 
