data_V6D
#

_chem_comp.id                                   V6D
_chem_comp.name                                 "(3S,6Z,8E,11S,15R)-15-amino-3-[(1E,3E,5E)-7-(dimethylamino)-2,5-dimethylhepta-1,3,5-trien-1-yl]-9,11-dimethyl-4,12-dioxa-20-thia-21-azabicyclo[16.2.1]henicosa-1(21),6,8,18-tetraene-5,13-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H43 N3 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "des-methyl Pateamine A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-07
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       541.745
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V6D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XKI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V6D  C10   C1   C  0  1  N  N  N  -22.231  -49.983  -33.564  -3.939   3.697  -0.900  C10   V6D   1  
V6D  C13   C2   C  0  1  N  N  N  -22.125  -46.671  -31.919  -2.116   1.890  -3.489  C13   V6D   2  
V6D  C17   C3   C  0  1  N  N  S  -23.449  -43.426  -33.035   0.037  -0.856  -2.308  C17   V6D   3  
V6D  C21   C4   C  0  1  Y  N  N  -26.825  -45.733  -30.913  -1.000  -3.816   0.503  C21   V6D   4  
V6D  C22   C5   C  0  1  Y  N  N  -25.990  -46.071  -29.905  -0.235  -4.880   0.241  C22   V6D   5  
V6D  C24   C6   C  0  1  N  N  N  -22.691  -42.193  -33.530   1.531  -0.654  -2.323  C24   V6D   6  
V6D  C26   C7   C  0  1  N  N  N  -23.613  -42.476  -35.818   1.437  -0.410   0.124  C26   V6D   7  
V6D  C28   C8   C  0  1  N  N  N  -21.894  -39.989  -36.334   4.274   0.140  -0.062  C28   V6D   8  
V6D  C01   C9   C  0  1  N  N  N  -28.177  -46.366  -31.247  -1.752  -3.649   1.797  C01   V6D   9  
V6D  C02   C10  C  0  1  N  N  N  -28.107  -47.239  -32.497  -1.788  -2.167   2.176  C02   V6D  10  
V6D  C03   C11  C  0  1  N  N  R  -27.260  -48.494  -32.296  -3.222  -1.764   2.529  C03   V6D  11  
V6D  C04   C12  C  0  1  N  N  N  -26.270  -48.607  -33.451  -3.224  -0.347   3.108  C04   V6D  12  
V6D  C05   C13  C  0  1  N  N  N  -25.564  -49.956  -33.488  -4.159   0.518   2.293  C05   V6D  13  
V6D  O06   O1   O  0  1  N  N  N  -25.442  -50.580  -32.489  -5.247   0.097   1.982  O06   V6D  14  
V6D  O07   O2   O  0  1  N  N  N  -25.081  -50.438  -34.710  -3.778   1.750   1.925  O07   V6D  15  
V6D  C08   C14  C  0  1  N  N  S  -24.022  -51.352  -34.656  -4.721   2.530   1.144  C08   V6D  16  
V6D  C09   C15  C  0  1  N  N  N  -22.694  -50.628  -34.868  -4.026   3.782   0.603  C09   V6D  17  
V6D  C11   C16  C  0  1  N  N  N  -22.312  -48.664  -33.435  -3.046   2.884  -1.467  C11   V6D  18  
V6D  C12   C17  C  0  1  N  N  N  -21.863  -47.948  -32.155  -2.955   2.790  -2.924  C12   V6D  19  
V6D  C14   C18  C  0  1  N  N  N  -22.899  -45.784  -32.894  -1.357   1.023  -2.663  C14   V6D  20  
V6D  O15   O3   O  0  1  N  N  N  -23.812  -46.197  -33.526  -1.410   1.142  -1.454  O15   V6D  21  
V6D  O16   O4   O  0  1  N  N  N  -22.489  -44.445  -33.004  -0.577   0.068  -3.210  O16   V6D  22  
V6D  C18   C19  C  0  1  N  N  N  -24.009  -43.122  -31.646  -0.289  -2.285  -2.744  C18   V6D  23  
V6D  C19   C20  C  0  1  Y  N  N  -24.898  -44.233  -31.095  -0.361  -3.177  -1.532  C19   V6D  24  
V6D  N20   N1   N  0  1  Y  N  N  -26.176  -44.652  -31.609  -1.043  -2.924  -0.466  N20   V6D  25  
V6D  S23   S1   S  0  1  Y  N  N  -24.578  -45.219  -29.767   0.451  -4.673  -1.369  S23   V6D  26  
V6D  C25   C21  C  0  1  N  N  N  -22.746  -41.759  -34.780   2.180  -0.402  -1.186  C25   V6D  27  
V6D  C27   C22  C  0  1  N  N  N  -21.910  -40.511  -35.120   3.617  -0.116  -1.212  C27   V6D  28  
V6D  C29   C23  C  0  1  N  N  N  -21.064  -38.743  -36.689   5.711   0.425  -0.088  C29   V6D  29  
V6D  C30   C24  C  0  1  N  N  N  -21.141  -38.318  -37.941   6.360   0.678   1.048  C30   V6D  30  
V6D  C31   C25  C  0  1  N  N  N  -20.366  -37.094  -38.446   7.807   1.097   1.012  C31   V6D  31  
V6D  N32   N2   N  0  1  N  N  N  -21.024  -36.494  -39.607   7.970   2.362   1.740  N32   V6D  32  
V6D  C33   C26  C  0  1  N  N  N  -20.272  -35.323  -40.013   7.693   2.184   3.172  C33   V6D  33  
V6D  C34   C27  C  0  1  N  N  N  -21.114  -37.411  -40.738   9.311   2.923   1.528  C34   V6D  34  
V6D  C35   C28  C  0  1  N  N  N  -20.192  -38.012  -35.663   6.454   0.433  -1.399  C35   V6D  35  
V6D  C36   C29  C  0  1  N  N  N  -21.688  -50.898  -32.459  -4.862   4.524  -1.756  C36   V6D  36  
V6D  C37   C30  C  0  1  N  N  N  -24.212  -52.382  -35.769  -5.898   2.944   2.031  C37   V6D  37  
V6D  N38   N3   N  0  1  N  N  N  -28.121  -49.663  -32.273  -3.764  -2.700   3.523  N38   V6D  38  
V6D  H131  H1   H  0  0  N  N  N  -21.775  -46.236  -30.994  -2.038   1.822  -4.563  H131  V6D  39  
V6D  H171  H2   H  0  0  N  N  N  -24.272  -43.661  -33.726  -0.343  -0.687  -1.300  H171  V6D  40  
V6D  H221  H3   H  0  0  N  N  N  -26.235  -46.866  -29.216  -0.066  -5.718   0.900  H221  V6D  41  
V6D  H241  H4   H  0  0  N  N  N  -22.080  -41.649  -32.825   2.075  -0.715  -3.254  H241  V6D  42  
V6D  H263  H5   H  0  0  N  N  N  -24.114  -43.335  -35.348   1.382  -1.430   0.504  H263  V6D  43  
V6D  H261  H6   H  0  0  N  N  N  -24.369  -41.779  -36.208   1.962   0.218   0.844  H261  V6D  44  
V6D  H262  H7   H  0  0  N  N  N  -22.979  -42.829  -36.644   0.429  -0.024  -0.027  H262  V6D  45  
V6D  H281  H8   H  0  0  N  N  N  -22.487  -40.455  -37.107   3.742   0.133   0.877  H281  V6D  46  
V6D  H011  H9   H  0  0  N  N  N  -28.912  -45.565  -31.414  -2.770  -4.019   1.676  H011  V6D  47  
V6D  H012  H10  H  0  0  N  N  N  -28.498  -46.987  -30.398  -1.252  -4.214   2.584  H012  V6D  48  
V6D  H022  H11  H  0  0  N  N  N  -27.670  -46.647  -33.315  -1.141  -1.996   3.036  H022  V6D  49  
V6D  H021  H12  H  0  0  N  N  N  -29.128  -47.544  -32.770  -1.439  -1.569   1.335  H021  V6D  50  
V6D  H031  H13  H  0  0  N  N  N  -26.706  -48.410  -31.350  -3.838  -1.790   1.630  H031  V6D  51  
V6D  H041  H14  H  0  0  N  N  N  -25.513  -47.816  -33.345  -3.565  -0.378   4.143  H041  V6D  52  
V6D  H042  H15  H  0  0  N  N  N  -26.815  -48.468  -34.397  -2.214   0.062   3.070  H042  V6D  53  
V6D  H081  H16  H  0  0  N  N  N  -23.999  -51.870  -33.686  -5.088   1.930   0.312  H081  V6D  54  
V6D  H092  H17  H  0  0  N  N  N  -21.936  -51.350  -35.205  -3.022   3.850   1.022  H092  V6D  55  
V6D  H091  H18  H  0  0  N  N  N  -22.823  -49.848  -35.633  -4.598   4.666   0.885  H091  V6D  56  
V6D  H111  H19  H  0  0  N  N  N  -22.705  -48.079  -34.254  -2.378   2.303  -0.848  H111  V6D  57  
V6D  H121  H20  H  0  0  N  N  N  -21.310  -48.508  -31.415  -3.553   3.436  -3.547  H121  V6D  58  
V6D  H182  H21  H  0  0  N  N  N  -23.166  -42.975  -30.955  -1.249  -2.297  -3.261  H182  V6D  59  
V6D  H181  H22  H  0  0  N  N  N  -24.602  -42.197  -31.704   0.489  -2.647  -3.415  H181  V6D  60  
V6D  H271  H23  H  0  0  N  N  N  -21.319  -40.049  -34.343   4.149  -0.110  -2.152  H271  V6D  61  
V6D  H301  H24  H  0  0  N  N  N  -21.774  -38.854  -38.633   5.850   0.582   1.995  H301  V6D  62  
V6D  H311  H25  H  0  0  N  N  N  -19.350  -37.405  -38.730   8.421   0.326   1.480  H311  V6D  63  
V6D  H312  H26  H  0  0  N  N  N  -20.309  -36.348  -37.640   8.121   1.231  -0.024  H312  V6D  64  
V6D  H332  H28  H  0  0  N  N  N  -20.197  -34.623  -39.168   8.385   1.450   3.587  H332  V6D  65  
V6D  H333  H29  H  0  0  N  N  N  -19.263  -35.627  -40.328   7.821   3.135   3.688  H333  V6D  66  
V6D  H331  H30  H  0  0  N  N  N  -20.785  -34.831  -40.852   6.670   1.833   3.304  H331  V6D  67  
V6D  H341  H31  H  0  0  N  N  N  -21.683  -38.305  -40.442   9.462   3.110   0.465  H341  V6D  68  
V6D  H343  H32  H  0  0  N  N  N  -21.625  -36.912  -41.575   9.403   3.859   2.079  H343  V6D  69  
V6D  H342  H33  H  0  0  N  N  N  -20.102  -37.708  -41.051  10.061   2.217   1.884  H342  V6D  70  
V6D  H351  H34  H  0  0  N  N  N  -20.266  -38.520  -34.690   6.509   1.453  -1.779  H351  V6D  71  
V6D  H352  H35  H  0  0  N  N  N  -19.145  -38.018  -36.001   7.462   0.047  -1.247  H352  V6D  72  
V6D  H353  H36  H  0  0  N  N  N  -20.539  -36.973  -35.561   5.929  -0.195  -2.118  H353  V6D  73  
V6D  H362  H37  H  0  0  N  N  N  -21.397  -50.291  -31.589  -5.403   3.871  -2.441  H362  V6D  74  
V6D  H361  H38  H  0  0  N  N  N  -22.467  -51.615  -32.161  -5.572   5.052  -1.120  H361  V6D  75  
V6D  H363  H39  H  0  0  N  N  N  -20.810  -51.445  -32.834  -4.278   5.246  -2.327  H363  V6D  76  
V6D  H373  H40  H  0  0  N  N  N  -25.167  -52.908  -35.623  -5.531   3.544   2.864  H373  V6D  77  
V6D  H371  H41  H  0  0  N  N  N  -24.220  -51.872  -36.743  -6.606   3.530   1.445  H371  V6D  78  
V6D  H372  H42  H  0  0  N  N  N  -23.386  -53.108  -35.742  -6.394   2.053   2.415  H372  V6D  79  
V6D  H2    H43  H  0  1  N  N  N  -28.769  -49.586  -31.515  -4.710  -2.455   3.772  H2    V6D  80  
V6D  H382  H44  H  0  0  N  N  N  -28.623  -49.724  -33.136  -3.713  -3.651   3.189  H382  V6D  81  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V6D  C34  N32   SING  N  N   1  
V6D  C33  N32   SING  N  N   2  
V6D  N32  C31   SING  N  N   3  
V6D  C31  C30   SING  N  N   4  
V6D  C30  C29   DOUB  N  E   5  
V6D  C29  C28   SING  N  N   6  
V6D  C29  C35   SING  N  N   7  
V6D  C28  C27   DOUB  N  E   8  
V6D  C26  C25   SING  N  N   9  
V6D  C37  C08   SING  N  N  10  
V6D  C27  C25   SING  N  N  11  
V6D  C09  C08   SING  N  N  12  
V6D  C09  C10   SING  N  N  13  
V6D  C25  C24   DOUB  N  E  14  
V6D  O07  C08   SING  N  N  15  
V6D  O07  C05   SING  N  N  16  
V6D  C10  C11   DOUB  N  E  17  
V6D  C10  C36   SING  N  N  18  
V6D  C24  C17   SING  N  N  19  
V6D  O15  C14   DOUB  N  N  20  
V6D  C05  C04   SING  N  N  21  
V6D  C05  O06   DOUB  N  N  22  
V6D  C04  C03   SING  N  N  23  
V6D  C11  C12   SING  N  N  24  
V6D  C17  O16   SING  N  N  25  
V6D  C17  C18   SING  N  N  26  
V6D  O16  C14   SING  N  N  27  
V6D  C14  C13   SING  N  N  28  
V6D  C02  C03   SING  N  N  29  
V6D  C02  C01   SING  N  N  30  
V6D  C03  N38   SING  N  N  31  
V6D  C12  C13   DOUB  N  Z  32  
V6D  C18  C19   SING  N  N  33  
V6D  N20  C19   DOUB  Y  N  34  
V6D  N20  C21   SING  Y  N  35  
V6D  C01  C21   SING  N  N  36  
V6D  C19  S23   SING  Y  N  37  
V6D  C21  C22   DOUB  Y  N  38  
V6D  C22  S23   SING  Y  N  39  
V6D  C13  H131  SING  N  N  40  
V6D  C17  H171  SING  N  N  41  
V6D  C22  H221  SING  N  N  42  
V6D  C24  H241  SING  N  N  43  
V6D  C26  H263  SING  N  N  44  
V6D  C26  H261  SING  N  N  45  
V6D  C26  H262  SING  N  N  46  
V6D  C28  H281  SING  N  N  47  
V6D  C01  H011  SING  N  N  48  
V6D  C01  H012  SING  N  N  49  
V6D  C02  H022  SING  N  N  50  
V6D  C02  H021  SING  N  N  51  
V6D  C03  H031  SING  N  N  52  
V6D  C04  H041  SING  N  N  53  
V6D  C04  H042  SING  N  N  54  
V6D  C08  H081  SING  N  N  55  
V6D  C09  H092  SING  N  N  56  
V6D  C09  H091  SING  N  N  57  
V6D  C11  H111  SING  N  N  58  
V6D  C12  H121  SING  N  N  59  
V6D  C18  H182  SING  N  N  60  
V6D  C18  H181  SING  N  N  61  
V6D  C27  H271  SING  N  N  62  
V6D  C30  H301  SING  N  N  63  
V6D  C31  H311  SING  N  N  64  
V6D  C31  H312  SING  N  N  65  
V6D  C33  H332  SING  N  N  66  
V6D  C33  H333  SING  N  N  67  
V6D  C33  H331  SING  N  N  68  
V6D  C34  H341  SING  N  N  69  
V6D  C34  H343  SING  N  N  70  
V6D  C34  H342  SING  N  N  71  
V6D  C35  H351  SING  N  N  72  
V6D  C35  H352  SING  N  N  73  
V6D  C35  H353  SING  N  N  74  
V6D  C36  H362  SING  N  N  75  
V6D  C36  H361  SING  N  N  76  
V6D  C36  H363  SING  N  N  77  
V6D  C37  H373  SING  N  N  78  
V6D  C37  H371  SING  N  N  79  
V6D  C37  H372  SING  N  N  80  
V6D  N38  H2    SING  N  N  81  
V6D  N38  H382  SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V6D  SMILES            ACDLabs               12.01  "C1(=CC=CC(=O)OC(Cc2scc(CCC(N)CC(=O)OC(C1)C)n2)[C@H]=C(C)C=[C@H]C(C)=[C@H]CN(C)C)C"  
V6D  InChI             InChI                 1.03   "InChI=1S/C30H43N3O4S/c1-21(14-15-33(5)6)10-11-23(3)17-27-19-28-32-26(20-38-28)13-12-25(31)18-30(35)36-24(4)16-22(2)8-7-9-29(34)37-27/h7-11,14,17,20,24-25,27H,12-13,15-16,18-19,31H2,1-6H3/b9-7-,11-10+,21-14+,22-8+,23-17+/t24-,25+,27+/m0/s1"  
V6D  InChIKey          InChI                 1.03   OKCOLQKYUABEJR-GFYARHHKSA-N  
V6D  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1C\C(=C\C=C/C(=O)O[C@@H](Cc2scc(CC[C@@H](N)CC(=O)O1)n2)/C=C(C)/C=C/C(C)=C/CN(C)C)C"  
V6D  SMILES            CACTVS                3.385  "C[CH]1CC(=CC=CC(=O)O[CH](Cc2scc(CC[CH](N)CC(=O)O1)n2)C=C(C)C=CC(C)=CCN(C)C)C"  
V6D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1C/C(=C/C=C\C(=O)O[C@@H](Cc2nc(cs2)CC[C@H](CC(=O)O1)N)/C=C(\C)/C=C/C(=C/CN(C)C)/C)/C"  
V6D  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CC(=CC=CC(=O)OC(Cc2nc(cs2)CCC(CC(=O)O1)N)C=C(C)C=CC(=CCN(C)C)C)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V6D  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3S,6Z,8E,11S,15R)-15-amino-3-[(1E,3E,5E)-7-(dimethylamino)-2,5-dimethylhepta-1,3,5-trien-1-yl]-9,11-dimethyl-4,12-dioxa-20-thia-21-azabicyclo[16.2.1]henicosa-1(21),6,8,18-tetraene-5,13-dione"  
V6D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{S},6~{Z},8~{E},11~{S},15~{R})-15-azanyl-3-[(1~{E},3~{E},5~{E})-7-(dimethylamino)-2,5-dimethyl-hepta-1,3,5-trienyl]-9,11-dimethyl-4,12-dioxa-20-thia-21-azabicyclo[16.2.1]henicosa-1(21),6,8,18-tetraene-5,13-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V6D  "Create component"  2020-07-07  RCSB  
V6D  "Modify synonyms"   2020-07-07  RCSB  
V6D  "Initial release"   2021-01-06  RCSB  
V6D  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     V6D
_pdbx_chem_comp_synonyms.name        "des-methyl Pateamine A"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
