data_W5D
#

_chem_comp.id                                   W5D
_chem_comp.name                                 "4-(1,4-oxazonan-4-yl)-7H-pyrrolo[2,3-d]pyrimidine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H18 N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-29
_chem_comp.pdbx_modified_date                   2020-12-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       246.308
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    W5D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RSI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W5D  C10   C1   C  0  1  Y  N  N  -45.123  -29.429   4.184  -0.853   0.586   0.138  C10   W5D   1  
W5D  C17   C2   C  0  1  Y  N  N  -47.736  -29.128   4.386  -1.791  -1.832  -0.399  C17   W5D   2  
W5D  C01   C3   C  0  1  N  N  N  -46.649  -30.829  -0.141   3.934  -1.125  -0.311  C01   W5D   3  
W5D  C03   C4   C  0  1  N  N  N  -46.813  -29.228   1.524   2.222  -1.263   1.315  C03   W5D   4  
W5D  C04   C5   C  0  1  N  N  N  -45.601  -29.376   1.448   0.762  -0.814   1.144  C04   W5D   5  
W5D  C05   C6   C  0  1  N  N  N  -45.401  -30.532   0.217   3.990   0.415  -0.302  C05   W5D   6  
W5D  C06   C7   C  0  1  N  N  N  -44.513  -31.703   0.528   2.941   0.884  -1.365  C06   W5D   7  
W5D  C07   C8   C  0  1  N  N  N  -45.006  -32.105   1.771   2.057   1.932  -0.657  C07   W5D   8  
W5D  C08   C9   C  0  1  N  N  N  -44.158  -31.030   2.732   1.321   1.450   0.611  C08   W5D   9  
W5D  C12   C10  C  0  1  Y  N  N  -44.156  -29.415   6.239  -2.546   2.143   0.318  C12   W5D  10  
W5D  C14   C11  C  0  1  Y  N  N  -46.382  -29.151   6.123  -3.177  -0.022  -0.137  C14   W5D  11  
W5D  C16   C12  C  0  1  Y  N  N  -48.440  -28.975   5.500  -3.066  -2.223  -0.561  C16   W5D  12  
W5D  C18   C13  C  0  1  Y  N  N  -46.387  -29.294   4.769  -1.821  -0.398  -0.120  C18   W5D  13  
W5D  N09   N1   N  0  1  N  N  N  -44.869  -29.645   2.796   0.492   0.266   0.165  N09   W5D  14  
W5D  N11   N2   N  0  1  Y  N  N  -44.055  -29.483   4.959  -1.262   1.833   0.349  N11   W5D  15  
W5D  N13   N3   N  0  1  Y  N  N  -45.265  -29.205   6.826  -3.487   1.255   0.082  N13   W5D  16  
W5D  N15   N4   N  0  1  Y  N  N  -47.630  -29.020   6.529  -3.904  -1.149  -0.407  N15   W5D  17  
W5D  O02   O1   O  0  1  N  N  N  -47.234  -29.461  -0.018   2.662  -1.735  -0.004  O02   W5D  18  
W5D  H171  H1   H  0  0  N  N  N  -48.122  -29.126   3.377  -0.913  -2.458  -0.462  H171  W5D  19  
W5D  H011  H2   H  0  0  N  N  N  -46.706  -31.215  -1.169   4.240  -1.466  -1.300  H011  W5D  20  
W5D  H012  H3   H  0  0  N  N  N  -47.120  -31.547   0.547   4.666  -1.492   0.408  H012  W5D  21  
W5D  H031  H4   H  0  0  N  N  N  -47.273  -29.975   2.188   2.837  -0.423   1.637  H031  W5D  22  
W5D  H032  H5   H  0  0  N  N  N  -47.078  -28.218   1.869   2.282  -2.073   2.042  H032  W5D  23  
W5D  H041  H6   H  0  0  N  N  N  -45.406  -30.229   0.781   0.177  -1.686   0.851  H041  W5D  24  
W5D  H1    H7   H  0  1  N  N  N  -45.176  -28.462   1.009   0.398  -0.483   2.116  H1    W5D  25  
W5D  H2    H8   H  0  1  N  N  N  -44.939  -29.968  -0.607   3.722   0.796   0.683  H2    W5D  26  
W5D  H051  H9   H  0  0  N  N  N  -45.449  -29.898   1.114   4.987   0.757  -0.581  H051  W5D  27  
W5D  H061  H10  H  0  0  N  N  N  -44.620  -32.499  -0.223   3.448   1.336  -2.218  H061  W5D  28  
W5D  H062  H11  H  0  0  N  N  N  -43.457  -31.400   0.593   2.334   0.040  -1.691  H062  W5D  29  
W5D  H071  H12  H  0  0  N  N  N  -46.094  -31.964   1.851   2.687   2.779  -0.383  H071  W5D  30  
W5D  H072  H13  H  0  0  N  N  N  -44.755  -33.152   1.998   1.312   2.285  -1.369  H072  W5D  31  
W5D  H081  H14  H  0  0  N  N  N  -44.083  -31.441   3.749   2.040   1.143   1.371  H081  W5D  32  
W5D  H082  H15  H  0  0  N  N  N  -43.149  -30.896   2.315   0.676   2.240   0.996  H082  W5D  33  
W5D  H121  H16  H  0  0  N  N  N  -43.266  -29.541   6.838  -2.835   3.169   0.495  H121  W5D  34  
W5D  H161  H17  H  0  0  N  N  N  -49.510  -28.836   5.551  -3.383  -3.231  -0.780  H161  W5D  35  
W5D  H151  H18  H  0  0  N  N  N  -47.917  -28.963   7.485  -4.871  -1.183  -0.479  H151  W5D  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W5D  C10  C18   DOUB  Y  N   1  
W5D  C10  N09   SING  N  N   2  
W5D  C10  N11   SING  Y  N   3  
W5D  C17  C16   DOUB  Y  N   4  
W5D  C17  C18   SING  Y  N   5  
W5D  C01  C05   SING  N  N   6  
W5D  C01  O02   SING  N  N   7  
W5D  C03  C04   SING  N  N   8  
W5D  C03  O02   SING  N  N   9  
W5D  C04  N09   SING  N  N  10  
W5D  C05  C06   SING  N  N  11  
W5D  C06  C07   SING  N  N  12  
W5D  C07  C08   SING  N  N  13  
W5D  C08  N09   SING  N  N  14  
W5D  C12  N11   DOUB  Y  N  15  
W5D  C12  N13   SING  Y  N  16  
W5D  C14  C18   SING  Y  N  17  
W5D  C14  N13   DOUB  Y  N  18  
W5D  C14  N15   SING  Y  N  19  
W5D  C16  N15   SING  Y  N  20  
W5D  C17  H171  SING  N  N  21  
W5D  C01  H011  SING  N  N  22  
W5D  C01  H012  SING  N  N  23  
W5D  C03  H031  SING  N  N  24  
W5D  C03  H032  SING  N  N  25  
W5D  C04  H041  SING  N  N  26  
W5D  C04  H1    SING  N  N  27  
W5D  C05  H2    SING  N  N  28  
W5D  C05  H051  SING  N  N  29  
W5D  C06  H061  SING  N  N  30  
W5D  C06  H062  SING  N  N  31  
W5D  C07  H071  SING  N  N  32  
W5D  C07  H072  SING  N  N  33  
W5D  C08  H081  SING  N  N  34  
W5D  C08  H082  SING  N  N  35  
W5D  C12  H121  SING  N  N  36  
W5D  C16  H161  SING  N  N  37  
W5D  N15  H151  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W5D  SMILES            ACDLabs               12.01  "c2(c1ccnc1ncn2)N3CCOCCCCC3"  
W5D  InChI             InChI                 1.03   "InChI=1S/C13H18N4O/c1-2-6-17(7-9-18-8-3-1)13-11-4-5-14-12(11)15-10-16-13/h4-5,10H,1-3,6-9H2,(H,14,15,16)"  
W5D  InChIKey          InChI                 1.03   UZDOXWRWKJXTPZ-UHFFFAOYSA-N  
W5D  SMILES_CANONICAL  CACTVS                3.385  "C1CCOCCN(CC1)c2ncnc3[nH]ccc23"  
W5D  SMILES            CACTVS                3.385  "C1CCOCCN(CC1)c2ncnc3[nH]ccc23"  
W5D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c[nH]c2c1c(ncn2)N3CCCCCOCC3"  
W5D  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c[nH]c2c1c(ncn2)N3CCCCCOCC3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W5D  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-(1,4-oxazonan-4-yl)-7H-pyrrolo[2,3-d]pyrimidine"  
W5D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "4-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-1,4-oxazonane"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W5D  "Create component"  2020-09-29  RCSB  
W5D  "Initial release"   2020-12-16  RCSB  
##
