data_W8D
#

_chem_comp.id                                   W8D
_chem_comp.name                                 "3-{[(2R)-oxolan-2-yl]methyl}-3H-purin-6-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H13 N5 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-29
_chem_comp.pdbx_modified_date                   2020-12-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       219.243
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    W8D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RVF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W8D  C10   C1   C  0  1  N  N  R  -44.521  -28.102   1.663  -2.137  -0.491  -0.109  C10   W8D   1  
W8D  C13   C2   C  0  1  N  N  N  -43.695  -26.746   0.010  -4.506   0.079  -0.045  C13   W8D   2  
W8D  C15   C3   C  0  1  Y  N  N  -47.287  -29.101   3.183   0.332   1.407   0.757  C15   W8D   3  
W8D  C02   C4   C  0  1  Y  N  N  -47.680  -28.984   5.403   2.491   1.194  -0.045  C02   W8D   4  
W8D  C03   C5   C  0  1  Y  N  N  -46.259  -29.124   5.612   2.329  -0.198  -0.144  C03   W8D   5  
W8D  C05   C6   C  0  1  Y  N  N  -44.262  -29.362   6.325   2.409  -2.334  -0.412  C05   W8D   6  
W8D  C07   C7   C  0  1  Y  N  N  -45.489  -29.282   4.583   1.090  -0.759   0.240  C07   W8D   7  
W8D  C09   C8   C  0  1  N  N  N  -45.110  -29.422   2.091  -1.198  -0.455   1.098  C09   W8D   8  
W8D  C12   C9   C  0  1  N  N  N  -45.188  -26.395   0.177  -3.705   0.898  -1.095  C12   W8D   9  
W8D  C14   C10  C  0  1  N  N  N  -43.584  -28.097   0.655  -3.509  -1.052   0.311  C14   W8D  10  
W8D  N01   N1   N  0  1  N  N  N  -48.546  -28.818   6.531   3.676   1.783  -0.406  N01   W8D  11  
W8D  N04   N2   N  0  1  Y  N  N  -45.494  -29.149   6.759   3.103  -1.223  -0.538  N04   W8D  12  
W8D  N06   N3   N  0  1  Y  N  N  -44.229  -29.418   5.011   1.195  -2.066   0.055  N06   W8D  13  
W8D  N08   N4   N  0  1  Y  N  N  -45.987  -29.265   3.323   0.101   0.086   0.691  N08   W8D  14  
W8D  N16   N5   N  0  1  Y  N  N  -48.140  -28.967   4.218   1.475   1.937   0.405  N16   W8D  15  
W8D  O11   O1   O  0  1  N  N  N  -45.691  -27.287   1.016  -2.349   0.842  -0.604  O11   W8D  16  
W8D  H101  H1   H  0  0  N  N  N  -44.160  -27.558   2.548  -1.707  -1.113  -0.895  H101  W8D  17  
W8D  H132  H2   H  0  0  N  N  N  -43.418  -26.793  -1.053  -4.733   0.686   0.831  H132  W8D  18  
W8D  H131  H3   H  0  0  N  N  N  -43.058  -26.011   0.523  -5.418  -0.328  -0.482  H131  W8D  19  
W8D  H151  H4   H  0  0  N  N  N  -47.692  -29.072   2.182  -0.456   2.056   1.109  H151  W8D  20  
W8D  H051  H5   H  0  0  N  N  N  -43.399  -29.475   6.964   2.774  -3.321  -0.655  H051  W8D  21  
W8D  H092  H6   H  0  0  N  N  N  -45.718  -29.826   1.268  -1.628   0.178   1.874  H092  W8D  22  
W8D  H091  H7   H  0  0  N  N  N  -44.292  -30.121   2.321  -1.066  -1.465   1.486  H091  W8D  23  
W8D  H121  H8   H  0  0  N  N  N  -45.296  -25.381   0.590  -3.775   0.434  -2.079  H121  W8D  24  
W8D  H122  H9   H  0  0  N  N  N  -45.703  -26.453  -0.793  -4.060   1.928  -1.130  H122  W8D  25  
W8D  H141  H10  H  0  0  N  N  N  -43.801  -28.891  -0.075  -3.741  -1.956  -0.253  H141  W8D  26  
W8D  H142  H11  H  0  0  N  N  N  -42.575  -28.244   1.068  -3.527  -1.253   1.382  H142  W8D  27  
W8D  H011  H12  H  0  0  N  N  N  -49.487  -28.699   6.215   4.409   1.238  -0.732  H011  W8D  28  
W8D  H012  H13  H  0  0  N  N  N  -48.491  -29.627   7.116   3.781   2.745  -0.336  H012  W8D  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W8D  C13  C12   SING  N  N   1  
W8D  C13  C14   SING  N  N   2  
W8D  C12  O11   SING  N  N   3  
W8D  C14  C10   SING  N  N   4  
W8D  O11  C10   SING  N  N   5  
W8D  C10  C09   SING  N  N   6  
W8D  C09  N08   SING  N  N   7  
W8D  C15  N08   SING  Y  N   8  
W8D  C15  N16   DOUB  Y  N   9  
W8D  N08  C07   SING  Y  N  10  
W8D  N16  C02   SING  Y  N  11  
W8D  C07  N06   DOUB  Y  N  12  
W8D  C07  C03   SING  Y  N  13  
W8D  N06  C05   SING  Y  N  14  
W8D  C02  C03   DOUB  Y  N  15  
W8D  C02  N01   SING  N  N  16  
W8D  C03  N04   SING  Y  N  17  
W8D  C05  N04   DOUB  Y  N  18  
W8D  C10  H101  SING  N  N  19  
W8D  C13  H132  SING  N  N  20  
W8D  C13  H131  SING  N  N  21  
W8D  C15  H151  SING  N  N  22  
W8D  C05  H051  SING  N  N  23  
W8D  C09  H092  SING  N  N  24  
W8D  C09  H091  SING  N  N  25  
W8D  C12  H121  SING  N  N  26  
W8D  C12  H122  SING  N  N  27  
W8D  C14  H141  SING  N  N  28  
W8D  C14  H142  SING  N  N  29  
W8D  N01  H011  SING  N  N  30  
W8D  N01  H012  SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W8D  SMILES            ACDLabs               12.01  "C3(CN2C=NC(=C1N=CN=C12)N)CCCO3"  
W8D  InChI             InChI                 1.03   "InChI=1S/C10H13N5O/c11-9-8-10(13-5-12-8)15(6-14-9)4-7-2-1-3-16-7/h5-7H,1-4,11H2/t7-/m1/s1"  
W8D  InChIKey          InChI                 1.03   GVRQWFFFCDLKPP-SSDOTTSWSA-N  
W8D  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncn(C[C@H]2CCCO2)c3ncnc13"  
W8D  SMILES            CACTVS                3.385  "Nc1ncn(C[CH]2CCCO2)c3ncnc13"  
W8D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc-2c(ncn(c2n1)C[C@H]3CCCO3)N"  
W8D  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc-2c(ncn(c2n1)CC3CCCO3)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W8D  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-{[(2R)-oxolan-2-yl]methyl}-3H-purin-6-amine"  
W8D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "3-[[(2~{R})-oxolan-2-yl]methyl]purin-6-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W8D  "Create component"  2020-09-29  RCSB  
W8D  "Initial release"   2020-12-16  RCSB  
##
