data_W9D
#

_chem_comp.id                                   W9D
_chem_comp.name                                 "5-{[4-{[(1S)-2-hydroxy-1-phenylethyl]amino}-5-(1,3,4-oxadiazol-2-yl)pyrimidin-2-yl]amino}-3,3-dimethyl-2-benzofuran-1(3H)-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H22 N6 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-01
_chem_comp.pdbx_modified_date                   2021-01-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       458.469
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    W9D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KAC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W9D  C18  C1   C  0  1  Y  N  N  30.220  -83.420  -5.007   5.053  -2.147  -1.017  C18  W9D   1  
W9D  C17  C2   C  0  1  Y  N  N  29.085  -82.639  -5.196   5.575  -1.075  -0.288  C17  W9D   2  
W9D  C16  C3   C  0  1  Y  N  N  28.167  -82.491  -4.179   4.706  -0.217   0.397  C16  W9D   3  
W9D  C15  C4   C  0  1  Y  N  N  28.358  -83.111  -2.956   3.351  -0.425   0.356  C15  W9D   4  
W9D  C19  C5   C  0  1  Y  N  N  30.425  -84.032  -3.783   3.693  -2.352  -1.056  C19  W9D   5  
W9D  C20  C6   C  0  1  Y  N  N  24.890  -80.547  -0.854  -5.100  -2.508   1.383  C20  W9D   6  
W9D  C21  C7   C  0  1  Y  N  N  23.584  -80.771  -1.252  -6.336  -2.525   2.002  C21  W9D   7  
W9D  C22  C8   C  0  1  Y  N  N  22.873  -81.830  -0.728  -7.253  -1.525   1.742  C22  W9D   8  
W9D  C23  C9   C  0  1  Y  N  N  23.468  -82.662   0.197  -6.935  -0.507   0.862  C23  W9D   9  
W9D  C24  C10  C  0  1  Y  N  N  24.777  -82.439   0.599  -5.700  -0.490   0.242  C24  W9D  10  
W9D  C11  C11  C  0  1  N  N  N  26.926  -79.670   1.227  -3.562  -2.018  -1.591  C11  W9D  11  
W9D  C12  C12  C  0  1  Y  N  N  25.501  -81.370   0.085  -4.782  -1.491   0.502  C12  W9D  12  
W9D  C27  C13  C  0  1  N  N  N  28.627  -81.855  -6.347   6.951  -0.605  -0.059  C27  W9D  13  
W9D  C1   C14  C  0  1  Y  N  N  28.536  -84.022   2.294  -1.085   1.469  -0.355  C1   W9D  14  
W9D  C2   C15  C  0  1  Y  N  N  29.346  -85.075   1.875   0.297   1.656  -0.429  C2   W9D  15  
W9D  N3   N1   N  0  1  Y  N  N  29.764  -85.248   0.624   1.089   0.597  -0.444  N3   W9D  16  
W9D  C4   C16  C  0  1  Y  N  N  29.323  -84.345  -0.258   0.591  -0.631  -0.391  C4   W9D  17  
W9D  N5   N2   N  0  1  Y  N  N  28.530  -83.300   0.005  -0.712  -0.858  -0.319  N5   W9D  18  
W9D  C6   C17  C  0  1  Y  N  N  28.134  -83.108   1.273  -1.577   0.149  -0.294  C6   W9D  19  
W9D  C7   C18  C  0  1  Y  N  N  28.213  -83.904   3.716  -2.005   2.623  -0.335  C7   W9D  20  
W9D  N8   N3   N  0  1  N  N  N  27.395  -82.015   1.552  -2.935  -0.092  -0.220  N8   W9D  21  
W9D  N9   N4   N  0  1  N  N  N  29.751  -84.540  -1.534   1.459  -1.709  -0.415  N9   W9D  22  
W9D  C10  C19  C  0  1  N  N  S  26.896  -81.050   0.587  -3.433  -1.469  -0.169  C10  W9D  23  
W9D  O13  O1   O  0  1  N  N  N  26.075  -79.630   2.361  -4.562  -1.281  -2.297  O13  W9D  24  
W9D  C14  C20  C  0  1  Y  N  N  29.500  -83.879  -2.751   2.834  -1.496  -0.372  C14  W9D  25  
W9D  C25  C21  C  0  1  N  N  N  27.063  -81.562  -4.620   5.574   0.816   1.071  C25  W9D  26  
W9D  O26  O2   O  0  1  N  N  N  27.432  -81.268  -6.018   6.947   0.486   0.725  O26  W9D  27  
W9D  C28  C22  C  0  1  N  N  N  25.690  -82.217  -4.633   5.223   2.213   0.556  C28  W9D  28  
W9D  C29  C23  C  0  1  N  N  N  27.062  -80.247  -3.859   5.384   0.752   2.588  C29  W9D  29  
W9D  O30  O3   O  0  1  N  N  N  29.178  -81.612  -7.395   7.948  -1.130  -0.514  O30  W9D  30  
W9D  O31  O4   O  0  1  Y  N  N  27.273  -82.988   4.097  -1.658   3.925  -0.382  O31  W9D  31  
W9D  C32  C24  C  0  1  Y  N  N  27.249  -83.094   5.447  -2.806   4.625  -0.341  C32  W9D  32  
W9D  N33  N5   N  0  1  Y  N  N  28.127  -84.024   5.852  -3.787   3.770  -0.273  N33  W9D  33  
W9D  N34  N6   N  0  1  Y  N  N  28.734  -84.535   4.713  -3.316   2.573  -0.273  N34  W9D  34  
W9D  H43  H1   H  0  1  N  N  N  30.934  -83.548  -5.807   5.716  -2.811  -1.552  H43  W9D  35  
W9D  H42  H2   H  0  1  N  N  N  27.627  -83.000  -2.168   2.685   0.239   0.886  H42  W9D  36  
W9D  H44  H3   H  0  1  N  N  N  31.308  -84.633  -3.626   3.289  -3.178  -1.623  H44  W9D  37  
W9D  H45  H4   H  0  1  N  N  N  25.442  -79.722  -1.279  -4.382  -3.287   1.589  H45  W9D  38  
W9D  H46  H5   H  0  1  N  N  N  23.121  -80.115  -1.974  -6.584  -3.320   2.690  H46  W9D  39  
W9D  H47  H6   H  0  1  N  N  N  21.855  -82.007  -1.041  -8.219  -1.538   2.226  H47  W9D  40  
W9D  H48  H7   H  0  1  N  N  N  22.912  -83.491   0.610  -7.653   0.275   0.658  H48  W9D  41  
W9D  H49  H8   H  0  1  N  N  N  25.237  -83.102   1.317  -5.452   0.305  -0.445  H49  W9D  42  
W9D  H39  H9   H  0  1  N  N  N  27.955  -79.438   1.538  -2.606  -1.920  -2.106  H39  W9D  43  
W9D  H40  H10  H  0  1  N  N  N  26.587  -78.923   0.494  -3.847  -3.069  -1.550  H40  W9D  44  
W9D  H35  H11  H  0  1  N  N  N  29.655  -85.799   2.615   0.714   2.651  -0.474  H35  W9D  45  
W9D  H36  H12  H  0  1  N  N  N  27.947  -81.482   2.193  -3.560   0.650  -0.202  H36  W9D  46  
W9D  H37  H13  H  0  1  N  N  N  30.375  -85.316  -1.627   1.110  -2.612  -0.463  H37  W9D  47  
W9D  H38  H14  H  0  1  N  N  N  27.573  -81.035  -0.280  -2.736  -2.086   0.397  H38  W9D  48  
W9D  H41  H15  H  0  1  N  N  N  26.104  -78.763   2.749  -4.697  -1.575  -3.208  H41  W9D  49  
W9D  H52  H16  H  0  1  N  N  N  25.384  -82.450  -3.602   4.176   2.428   0.774  H52  W9D  50  
W9D  H50  H17  H  0  1  N  N  N  24.960  -81.529  -5.085   5.855   2.951   1.049  H50  W9D  51  
W9D  H51  H18  H  0  1  N  N  N  25.732  -83.146  -5.221   5.386   2.256  -0.521  H51  W9D  52  
W9D  H53  H19  H  0  1  N  N  N  26.790  -80.431  -2.809   5.662  -0.238   2.948  H53  W9D  53  
W9D  H54  H20  H  0  1  N  N  N  28.064  -79.796  -3.904   6.016   1.502   3.065  H54  W9D  54  
W9D  H55  H21  H  0  1  N  N  N  26.331  -79.562  -4.313   4.340   0.948   2.832  H55  W9D  55  
W9D  H56  H22  H  0  1  N  N  N  26.615  -82.514   6.102  -2.897   5.701  -0.361  H56  W9D  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W9D  O30  C27  DOUB  N  N   1  
W9D  C27  O26  SING  N  N   2  
W9D  C27  C17  SING  N  N   3  
W9D  O26  C25  SING  N  N   4  
W9D  C17  C18  DOUB  Y  N   5  
W9D  C17  C16  SING  Y  N   6  
W9D  C18  C19  SING  Y  N   7  
W9D  C28  C25  SING  N  N   8  
W9D  C25  C16  SING  N  N   9  
W9D  C25  C29  SING  N  N  10  
W9D  C16  C15  DOUB  Y  N  11  
W9D  C19  C14  DOUB  Y  N  12  
W9D  C15  C14  SING  Y  N  13  
W9D  C14  N9   SING  N  N  14  
W9D  N9   C4   SING  N  N  15  
W9D  C21  C20  DOUB  Y  N  16  
W9D  C21  C22  SING  Y  N  17  
W9D  C20  C12  SING  Y  N  18  
W9D  C22  C23  DOUB  Y  N  19  
W9D  C4   N5   DOUB  Y  N  20  
W9D  C4   N3   SING  Y  N  21  
W9D  N5   C6   SING  Y  N  22  
W9D  C12  C10  SING  N  N  23  
W9D  C12  C24  DOUB  Y  N  24  
W9D  C23  C24  SING  Y  N  25  
W9D  C10  C11  SING  N  N  26  
W9D  C10  N8   SING  N  N  27  
W9D  N3   C2   DOUB  Y  N  28  
W9D  C11  O13  SING  N  N  29  
W9D  C6   N8   SING  N  N  30  
W9D  C6   C1   DOUB  Y  N  31  
W9D  C2   C1   SING  Y  N  32  
W9D  C1   C7   SING  N  N  33  
W9D  C7   O31  SING  Y  N  34  
W9D  C7   N34  DOUB  Y  N  35  
W9D  O31  C32  SING  Y  N  36  
W9D  N34  N33  SING  Y  N  37  
W9D  C32  N33  DOUB  Y  N  38  
W9D  C18  H43  SING  N  N  39  
W9D  C15  H42  SING  N  N  40  
W9D  C19  H44  SING  N  N  41  
W9D  C20  H45  SING  N  N  42  
W9D  C21  H46  SING  N  N  43  
W9D  C22  H47  SING  N  N  44  
W9D  C23  H48  SING  N  N  45  
W9D  C24  H49  SING  N  N  46  
W9D  C11  H39  SING  N  N  47  
W9D  C11  H40  SING  N  N  48  
W9D  C2   H35  SING  N  N  49  
W9D  N8   H36  SING  N  N  50  
W9D  N9   H37  SING  N  N  51  
W9D  C10  H38  SING  N  N  52  
W9D  O13  H41  SING  N  N  53  
W9D  C28  H52  SING  N  N  54  
W9D  C28  H50  SING  N  N  55  
W9D  C28  H51  SING  N  N  56  
W9D  C29  H53  SING  N  N  57  
W9D  C29  H54  SING  N  N  58  
W9D  C29  H55  SING  N  N  59  
W9D  C32  H56  SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W9D  SMILES            ACDLabs               12.01  "c1cc(cc2c1C(OC2(C)C)=O)Nc4ncc(c3ocnn3)c(n4)NC(CO)c5ccccc5"  
W9D  InChI             InChI                 1.03   "InChI=1S/C24H22N6O4/c1-24(2)18-10-15(8-9-16(18)22(32)34-24)27-23-25-11-17(21-30-26-13-33-21)20(29-23)28-19(12-31)14-6-4-3-5-7-14/h3-11,13,19,31H,12H2,1-2H3,(H2,25,27,28,29)/t19-/m1/s1"  
W9D  InChIKey          InChI                 1.03   RVSSNRBUPQUIEG-LJQANCHMSA-N  
W9D  SMILES_CANONICAL  CACTVS                3.385  "CC1(C)OC(=O)c2ccc(Nc3ncc(c(N[C@H](CO)c4ccccc4)n3)c5ocnn5)cc12"  
W9D  SMILES            CACTVS                3.385  "CC1(C)OC(=O)c2ccc(Nc3ncc(c(N[CH](CO)c4ccccc4)n3)c5ocnn5)cc12"  
W9D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1(c2cc(ccc2C(=O)O1)Nc3ncc(c(n3)N[C@H](CO)c4ccccc4)c5nnco5)C"  
W9D  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1(c2cc(ccc2C(=O)O1)Nc3ncc(c(n3)NC(CO)c4ccccc4)c5nnco5)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W9D  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-{[4-{[(1S)-2-hydroxy-1-phenylethyl]amino}-5-(1,3,4-oxadiazol-2-yl)pyrimidin-2-yl]amino}-3,3-dimethyl-2-benzofuran-1(3H)-one"  
W9D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "3,3-dimethyl-5-[[5-(1,3,4-oxadiazol-2-yl)-4-[[(1~{S})-2-oxidanyl-1-phenyl-ethyl]amino]pyrimidin-2-yl]amino]-2-benzofuran-1-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W9D  "Create component"  2020-10-01  RCSB  
W9D  "Initial release"   2021-01-13  RCSB  
##
