data_X7D
#

_chem_comp.id                                   X7D
_chem_comp.name                                 "tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C35 H41 N3 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-01
_chem_comp.pdbx_modified_date                   2021-01-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       583.783
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    X7D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KVQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X7D  C01  C1   C  0  1  N  N  N  120.065  44.262  84.816    4.668   2.824  -1.648  C01  X7D   1  
X7D  C02  C2   C  0  1  N  N  N  118.726  45.030  84.788    5.378   1.919  -0.638  C02  X7D   2  
X7D  C03  C3   C  0  1  N  N  N  118.861  46.397  85.393    6.170   0.845  -1.385  C03  X7D   3  
X7D  C04  C4   C  0  1  N  N  N  118.317  45.226  83.282    6.332   2.757   0.214  C04  X7D   4  
X7D  C06  C5   C  0  1  N  N  N  117.928  43.795  86.793    3.480   0.496  -0.377  C06  X7D   5  
X7D  C09  C6   C  0  1  N  N  S  118.234  41.332  87.144    1.676  -1.139  -0.271  C09  X7D   6  
X7D  C10  C7   C  0  1  N  N  N  117.380  40.209  86.487    0.235  -0.689  -0.024  C10  X7D   7  
X7D  C12  C8   C  0  1  N  N  S  114.416  39.472  87.019   -1.710   1.368  -0.248  C12  X7D   8  
X7D  C13  C9   C  0  1  N  N  N  113.847  38.593  85.844   -2.023   2.808  -0.657  C13  X7D   9  
X7D  C14  C10  C  0  1  Y  N  N  113.465  37.097  86.053   -1.130   3.753   0.105  C14  X7D  10  
X7D  C15  C11  C  0  1  Y  N  N  112.998  36.590  87.283    0.042   4.209  -0.468  C15  X7D  11  
X7D  C16  C12  C  0  1  Y  N  N  112.655  35.241  87.455    0.862   5.076   0.231  C16  X7D  12  
X7D  C17  C13  C  0  1  Y  N  N  112.755  34.345  86.389    0.509   5.486   1.503  C17  X7D  13  
X7D  C18  C14  C  0  1  Y  N  N  113.205  34.815  85.154   -0.664   5.030   2.076  C18  X7D  14  
X7D  C19  C15  C  0  1  Y  N  N  113.550  36.167  84.993   -1.486   4.168   1.375  C19  X7D  15  
X7D  C20  C16  C  0  1  N  N  N  115.161  38.723  88.142   -2.691   0.433  -0.907  C20  X7D  16  
X7D  C23  C17  C  0  1  N  N  N  116.688  36.863  89.033   -4.879  -0.632  -1.029  C23  X7D  17  
X7D  C24  C18  C  0  1  N  N  N  116.633  35.299  88.926   -6.194  -0.626  -0.247  C24  X7D  18  
X7D  C25  C19  C  0  1  N  N  N  117.580  34.508  89.885   -7.190  -1.575  -0.916  C25  X7D  19  
X7D  C26  C20  C  0  1  Y  N  N  118.997  34.294  89.360   -8.485  -1.568  -0.146  C26  X7D  20  
X7D  C27  C21  C  0  1  Y  N  N  119.355  34.405  88.008   -8.686  -2.461   0.897  C27  X7D  21  
X7D  C28  C22  C  0  1  Y  N  N  120.675  34.196  87.580   -9.893  -2.418   1.578  C28  X7D  22  
X7D  C29  C23  C  0  1  Y  N  N  121.647  33.871  88.538  -10.849  -1.495   1.198  C29  X7D  23  
X7D  C31  C24  C  0  1  Y  N  N  120.052  33.960  90.233   -9.485  -0.669  -0.465  C31  X7D  24  
X7D  C32  C25  C  0  1  N  N  N  118.774  40.947  88.577    1.882  -2.536   0.318  C32  X7D  25  
X7D  C33  C26  C  0  1  Y  N  N  119.507  39.634  88.814    3.257  -3.036  -0.044  C33  X7D  26  
X7D  C34  C27  C  0  1  Y  N  N  120.494  38.997  87.922    4.354  -2.751   0.788  C34  X7D  27  
X7D  C35  C28  C  0  1  Y  N  N  120.876  39.573  86.654    4.200  -2.001   1.967  C35  X7D  28  
X7D  C36  C29  C  0  1  Y  N  N  121.794  38.954  85.827    5.285  -1.745   2.748  C36  X7D  29  
X7D  C37  C30  C  0  1  Y  N  N  122.387  37.738  86.210    6.549  -2.215   2.397  C37  X7D  30  
X7D  C38  C31  C  0  1  Y  N  N  122.055  37.155  87.418    6.736  -2.944   1.263  C38  X7D  31  
X7D  C39  C32  C  0  1  Y  N  N  121.091  37.805  88.274    5.640  -3.229   0.432  C39  X7D  32  
X7D  C40  C33  C  0  1  Y  N  N  120.773  37.160  89.519    5.793  -3.979  -0.747  C40  X7D  33  
X7D  C41  C34  C  0  1  Y  N  N  119.857  37.754  90.362    4.708  -4.236  -1.528  C41  X7D  34  
X7D  C42  C35  C  0  1  Y  N  N  119.251  38.975  89.999    3.443  -3.770  -1.174  C42  X7D  35  
X7D  N08  N1   N  0  1  N  N  N  117.459  42.550  87.191    2.598  -0.198   0.370  N08  X7D  36  
X7D  N22  N2   N  0  1  N  N  N  115.953  37.588  87.961   -3.925   0.276  -0.388  N22  X7D  37  
X7D  N30  N3   N  0  1  Y  N  N  121.336  33.755  89.851  -10.623  -0.661   0.201  N30  X7D  38  
X7D  O05  O1   O  0  1  N  N  N  117.710  44.264  85.521    4.393   1.285   0.220  O05  X7D  39  
X7D  O07  O2   O  0  1  N  N  N  118.551  44.445  87.626    3.451   0.409  -1.588  O07  X7D  40  
X7D  O21  O3   O  0  1  N  N  N  115.078  39.169  89.309   -2.370  -0.178  -1.904  O21  X7D  41  
X7D  S11  S1   S  0  1  N  N  N  115.590  40.757  86.306   -0.025   0.943  -0.771  S11  X7D  42  
X7D  H1   H1   H  0  1  N  N  N  120.379  44.109  85.859    4.077   2.213  -2.330  H1   X7D  43  
X7D  H2   H2   H  0  1  N  N  N  119.938  43.286  84.324    4.012   3.515  -1.118  H2   X7D  44  
X7D  H3   H3   H  0  1  N  N  N  120.832  44.844  84.284    5.409   3.388  -2.214  H3   X7D  45  
X7D  H4   H4   H  0  1  N  N  N  119.147  46.304  86.451    6.909   1.321  -2.030  H4   X7D  46  
X7D  H5   H5   H  0  1  N  N  N  119.634  46.962  84.852    6.676   0.200  -0.666  H5   X7D  47  
X7D  H6   H6   H  0  1  N  N  N  117.900  46.927  85.319    5.490   0.248  -1.992  H6   X7D  48  
X7D  H7   H7   H  0  1  N  N  N  117.364  45.772  83.229    5.768   3.523   0.746  H7   X7D  49  
X7D  H8   H8   H  0  1  N  N  N  119.098  45.800  82.762    6.838   2.113   0.933  H8   X7D  50  
X7D  H9   H9   H  0  1  N  N  N  118.204  44.243  82.802    7.072   3.233  -0.430  H9   X7D  51  
X7D  H10  H10  H  0  1  N  N  N  119.111  41.496  86.501    1.870  -1.164  -1.343  H10  X7D  52  
X7D  H11  H11  H  0  1  N  N  N  117.420  39.309  87.118   -0.452  -1.407  -0.473  H11  X7D  53  
X7D  H12  H12  H  0  1  N  N  N  117.790  39.979  85.492    0.051  -0.632   1.048  H12  X7D  54  
X7D  H13  H13  H  0  1  N  N  N  113.587  40.045  87.460   -1.788   1.273   0.835  H13  X7D  55  
X7D  H14  H14  H  0  1  N  N  N  114.607  38.610  85.049   -1.850   2.928  -1.727  H14  X7D  56  
X7D  H15  H15  H  0  1  N  N  N  112.936  39.099  85.492   -3.066   3.032  -0.431  H15  X7D  57  
X7D  H16  H16  H  0  1  N  N  N  112.901  37.264  88.122    0.318   3.889  -1.462  H16  X7D  58  
X7D  H17  H17  H  0  1  N  N  N  112.311  34.893  88.418    1.778   5.432  -0.216  H17  X7D  59  
X7D  H18  H18  H  0  1  N  N  N  112.489  33.306  86.518    1.149   6.163   2.050  H18  X7D  60  
X7D  H19  H19  H  0  1  N  N  N  113.288  34.136  84.318   -0.939   5.350   3.070  H19  X7D  61  
X7D  H20  H20  H  0  1  N  N  N  113.892  36.507  84.027   -2.402   3.811   1.822  H20  X7D  62  
X7D  H21  H21  H  0  1  N  N  N  117.743  37.172  88.994   -4.468  -1.642  -1.041  H21  X7D  63  
X7D  H22  H22  H  0  1  N  N  N  116.256  37.155  90.002   -5.063  -0.303  -2.052  H22  X7D  64  
X7D  H23  H23  H  0  1  N  N  N  115.601  34.984  89.139   -6.010  -0.955   0.776  H23  X7D  65  
X7D  H24  H24  H  0  1  N  N  N  116.895  35.024  87.894   -6.605   0.384  -0.235  H24  X7D  66  
X7D  H25  H25  H  0  1  N  N  N  117.647  35.063  90.832   -7.374  -1.246  -1.939  H25  X7D  67  
X7D  H26  H26  H  0  1  N  N  N  117.132  33.521  90.069   -6.779  -2.584  -0.928  H26  X7D  68  
X7D  H27  H27  H  0  1  N  N  N  118.598  34.657  87.280   -7.921  -3.172   1.171  H27  X7D  69  
X7D  H28  H28  H  0  1  N  N  N  120.937  34.283  86.536  -10.084  -3.099   2.394  H28  X7D  70  
X7D  H29  H29  H  0  1  N  N  N  122.667  33.710  88.221  -11.791  -1.455   1.724  H29  X7D  71  
X7D  H30  H30  H  0  1  N  N  N  119.820  33.860  91.283   -9.334   0.032  -1.272  H30  X7D  72  
X7D  H31  H31  H  0  1  N  N  N  119.465  41.749  88.876    1.786  -2.491   1.403  H31  X7D  73  
X7D  H32  H32  H  0  1  N  N  N  117.903  40.944  89.249    1.131  -3.215  -0.086  H32  X7D  74  
X7D  H33  H33  H  0  1  N  N  N  120.434  40.509  86.345    3.227  -1.630   2.251  H33  X7D  75  
X7D  H34  H34  H  0  1  N  N  N  122.057  39.406  84.882    5.164  -1.168   3.654  H34  X7D  76  
X7D  H35  H35  H  0  1  N  N  N  123.103  37.259  85.559    7.393  -1.997   3.035  H35  X7D  77  
X7D  H36  H36  H  0  1  N  N  N  122.512  36.223  87.718    7.721  -3.300   1.003  H36  X7D  78  
X7D  H37  H37  H  0  1  N  N  N  121.243  36.226  89.790    6.767  -4.350  -1.031  H37  X7D  79  
X7D  H38  H38  H  0  1  N  N  N  119.604  37.284  91.301    4.829  -4.812  -2.433  H38  X7D  80  
X7D  H39  H39  H  0  1  N  N  N  118.547  39.419  90.687    2.598  -3.992  -1.809  H39  X7D  81  
X7D  H40  H40  H  0  1  N  N  N  116.521  42.493  87.533    2.574  -0.074   1.332  H40  X7D  82  
X7D  H41  H41  H  0  1  N  N  N  116.034  37.231  87.030   -4.181   0.765   0.410  H41  X7D  83  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X7D  C04  C02  SING  N  N   1  
X7D  C02  C01  SING  N  N   2  
X7D  C02  C03  SING  N  N   3  
X7D  C02  O05  SING  N  N   4  
X7D  C19  C18  DOUB  Y  N   5  
X7D  C19  C14  SING  Y  N   6  
X7D  C18  C17  SING  Y  N   7  
X7D  O05  C06  SING  N  N   8  
X7D  C36  C37  DOUB  Y  N   9  
X7D  C36  C35  SING  Y  N  10  
X7D  C13  C14  SING  N  N  11  
X7D  C13  C12  SING  N  N  12  
X7D  C14  C15  DOUB  Y  N  13  
X7D  C37  C38  SING  Y  N  14  
X7D  S11  C10  SING  N  N  15  
X7D  S11  C12  SING  N  N  16  
X7D  C17  C16  DOUB  Y  N  17  
X7D  C10  C09  SING  N  N  18  
X7D  C35  C34  DOUB  Y  N  19  
X7D  C06  N08  SING  N  N  20  
X7D  C06  O07  DOUB  N  N  21  
X7D  C12  C20  SING  N  N  22  
X7D  C09  N08  SING  N  N  23  
X7D  C09  C32  SING  N  N  24  
X7D  C15  C16  SING  Y  N  25  
X7D  C38  C39  DOUB  Y  N  26  
X7D  C28  C27  DOUB  Y  N  27  
X7D  C28  C29  SING  Y  N  28  
X7D  C34  C39  SING  Y  N  29  
X7D  C34  C33  SING  Y  N  30  
X7D  N22  C20  SING  N  N  31  
X7D  N22  C23  SING  N  N  32  
X7D  C27  C26  SING  Y  N  33  
X7D  C20  O21  DOUB  N  N  34  
X7D  C39  C40  SING  Y  N  35  
X7D  C29  N30  DOUB  Y  N  36  
X7D  C32  C33  SING  N  N  37  
X7D  C33  C42  DOUB  Y  N  38  
X7D  C24  C23  SING  N  N  39  
X7D  C24  C25  SING  N  N  40  
X7D  C26  C25  SING  N  N  41  
X7D  C26  C31  DOUB  Y  N  42  
X7D  C40  C41  DOUB  Y  N  43  
X7D  N30  C31  SING  Y  N  44  
X7D  C42  C41  SING  Y  N  45  
X7D  C01  H1   SING  N  N  46  
X7D  C01  H2   SING  N  N  47  
X7D  C01  H3   SING  N  N  48  
X7D  C03  H4   SING  N  N  49  
X7D  C03  H5   SING  N  N  50  
X7D  C03  H6   SING  N  N  51  
X7D  C04  H7   SING  N  N  52  
X7D  C04  H8   SING  N  N  53  
X7D  C04  H9   SING  N  N  54  
X7D  C09  H10  SING  N  N  55  
X7D  C10  H11  SING  N  N  56  
X7D  C10  H12  SING  N  N  57  
X7D  C12  H13  SING  N  N  58  
X7D  C13  H14  SING  N  N  59  
X7D  C13  H15  SING  N  N  60  
X7D  C15  H16  SING  N  N  61  
X7D  C16  H17  SING  N  N  62  
X7D  C17  H18  SING  N  N  63  
X7D  C18  H19  SING  N  N  64  
X7D  C19  H20  SING  N  N  65  
X7D  C23  H21  SING  N  N  66  
X7D  C23  H22  SING  N  N  67  
X7D  C24  H23  SING  N  N  68  
X7D  C24  H24  SING  N  N  69  
X7D  C25  H25  SING  N  N  70  
X7D  C25  H26  SING  N  N  71  
X7D  C27  H27  SING  N  N  72  
X7D  C28  H28  SING  N  N  73  
X7D  C29  H29  SING  N  N  74  
X7D  C31  H30  SING  N  N  75  
X7D  C32  H31  SING  N  N  76  
X7D  C32  H32  SING  N  N  77  
X7D  C35  H33  SING  N  N  78  
X7D  C36  H34  SING  N  N  79  
X7D  C37  H35  SING  N  N  80  
X7D  C38  H36  SING  N  N  81  
X7D  C40  H37  SING  N  N  82  
X7D  C41  H38  SING  N  N  83  
X7D  C42  H39  SING  N  N  84  
X7D  N08  H40  SING  N  N  85  
X7D  N22  H41  SING  N  N  86  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X7D  SMILES            ACDLabs               12.01  "CC(C)(OC(NC(Cc1cccc2c1cccc2)CSC(C(=O)NCCCc3cnccc3)Cc4ccccc4)=O)C"  
X7D  InChI             InChI                 1.03   "InChI=1S/C35H41N3O3S/c1-35(2,3)41-34(40)38-30(23-29-18-9-17-28-16-7-8-19-31(28)29)25-42-32(22-26-12-5-4-6-13-26)33(39)37-21-11-15-27-14-10-20-36-24-27/h4-10,12-14,16-20,24,30,32H,11,15,21-23,25H2,1-3H3,(H,37,39)(H,38,40)/t30-,32-/m0/s1"  
X7D  InChIKey          InChI                 1.03   XDOKSTKEPWQDPB-CDZUIXILSA-N  
X7D  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(C)OC(=O)N[C@H](CS[C@@H](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3cccc4ccccc34"  
X7D  SMILES            CACTVS                3.385  "CC(C)(C)OC(=O)N[CH](CS[CH](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3cccc4ccccc34"  
X7D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)N[C@@H](Cc1cccc2c1cccc2)CS[C@@H](Cc3ccccc3)C(=O)NCCCc4cccnc4"  
X7D  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)NC(Cc1cccc2c1cccc2)CSC(Cc3ccccc3)C(=O)NCCCc4cccnc4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X7D  "SYSTEMATIC NAME"  ACDLabs               12.01  "tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate"  
X7D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{tert}-butyl ~{N}-[(2~{S})-1-naphthalen-1-yl-3-[(2~{S})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-propan-2-yl]carbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X7D  "Create component"  2020-12-01  RCSB  
X7D  "Initial release"   2021-01-20  RCSB  
##
