data_PNE
# 
_chem_comp.id                                    PNE 
_chem_comp.name                                  "PARA-NITROPHENYL PHOSPHONOBUTANOYL L-ALANINE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H17 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-01-03 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        360.256 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PNE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        "OpenEye/OEToolkits V1.4.2" 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1KN2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PNE P1   P1   P 0  1 N N R 14.347 37.618 62.596 -3.761 -4.756 3.725 P1   PNE 1  
PNE O1   O1   O 0  1 N N N 13.168 37.077 61.605 -3.926 -3.772 4.986 O1   PNE 2  
PNE O2   O2   O 0  1 N N N 14.597 39.020 62.265 -4.485 -6.126 4.169 O2   PNE 3  
PNE O3   O3   O 0  1 N N N 13.993 37.281 63.980 -4.140 -4.213 2.388 O3   PNE 4  
PNE C8   C8   C 0  1 N N N 15.728 36.655 62.118 -2.015 -5.206 3.827 C8   PNE 5  
PNE C9   C9   C 0  1 N N N 16.156 36.944 60.694 -1.068 -4.039 3.579 C9   PNE 6  
PNE C10  C10  C 0  1 N N N 17.393 36.101 60.385 0.398  -4.454 3.681 C10  PNE 7  
PNE C11  C11  C 0  1 N N N 17.771 36.081 58.893 1.346  -3.285 3.475 C11  PNE 8  
PNE N2   N2   N 0  1 N N N 17.167 35.130 58.115 2.672  -3.681 3.572 N2   PNE 9  
PNE O6   O6   O 0  1 N N N 18.630 36.890 58.438 0.963  -2.141 3.248 O6   PNE 10 
PNE C12  C12  C 0  1 N N R 17.433 34.939 56.652 3.779  -2.767 3.412 C12  PNE 11 
PNE C1L  C1L  C 0  1 N N N 18.215 33.714 56.059 4.161  -2.202 4.770 C1L  PNE 12 
PNE C13  C13  C 0  1 N N N 16.999 36.116 55.741 4.915  -3.538 2.788 C13  PNE 13 
PNE O7   O7   O 0  1 N N N 16.017 36.830 56.068 5.173  -4.719 2.970 O7   PNE 14 
PNE O8   O8   O 0  1 N N N 17.644 36.293 54.654 5.631  -2.738 1.954 O8   PNE 15 
PNE C1   C1   C 0  1 Y N N 11.899 37.631 61.666 -5.096 -3.158 5.341 C1   PNE 16 
PNE C2   C2   C 0  1 Y N N 11.689 38.928 61.114 -5.126 -2.321 6.452 C2   PNE 17 
PNE C6   C6   C 0  1 Y N N 10.906 36.877 62.311 -6.245 -3.371 4.586 C6   PNE 18 
PNE C4   C4   C 0  1 Y N N 9.403  38.795 61.867 -7.473 -1.902 6.060 C4   PNE 19 
PNE C5   C5   C 0  1 Y N N 9.639  37.486 62.405 -7.436 -2.741 4.946 C5   PNE 20 
PNE C3   C3   C 0  1 Y N N 10.418 39.501 61.226 -6.317 -1.692 6.813 C3   PNE 21 
PNE N1   N1   N 1  1 N N N 8.069  39.415 62.051 -8.686 -1.263 6.427 N1   PNE 22 
PNE O4   O4   O 0  1 N N N 7.841  40.565 61.610 -8.697 -0.512 7.433 O4   PNE 23 
PNE O5   O5   O -1 1 N N N 7.183  38.761 62.680 -9.714 -1.466 5.737 O5   PNE 24 
PNE HO2  HO2  H 0  1 N N N 15.283 39.335 62.842 -5.465 -6.165 4.159 HO2  PNE 25 
PNE HC81 1HC8 H 0  0 N N N 15.535 35.567 62.270 -1.840 -5.603 4.833 HC81 PNE 26 
PNE HC82 2HC8 H 0  0 N N N 16.577 36.784 62.830 -1.821 -6.016 3.117 HC82 PNE 27 
PNE HC91 1HC9 H 0  0 N N N 16.319 38.031 60.507 -1.262 -3.618 2.585 HC91 PNE 28 
PNE HC92 2HC9 H 0  0 N N N 15.334 36.786 59.958 -1.278 -3.248 4.309 HC92 PNE 29 
PNE H101 1H10 H 0  0 N N N 17.269 35.063 60.773 0.596  -4.885 4.670 H101 PNE 30 
PNE H102 2H10 H 0  0 N N N 18.259 36.430 61.006 0.632  -5.214 2.928 H102 PNE 31 
PNE HN2  HN2  H 0  1 N N N 16.506 34.553 58.635 2.873  -4.658 3.764 HN2  PNE 32 
PNE H12  H12  H 0  1 N N N 17.034 33.903 56.550 3.467  -1.975 2.724 H12  PNE 33 
PNE H1L1 1H1L H 0  0 N N N 17.705 32.792 56.423 4.973  -1.473 4.679 H1L1 PNE 34 
PNE H1L2 2H1L H 0  0 N N N 18.413 33.572 54.971 3.308  -1.703 5.240 H1L2 PNE 35 
PNE H1L3 3H1L H 0  0 N N N 19.200 33.669 56.580 4.502  -2.992 5.449 H1L3 PNE 36 
PNE HO8  HO8  H 0  1 N N N 17.378 37.014 54.096 6.367  -3.224 1.525 HO8  PNE 37 
PNE HC2  HC2  H 0  1 N N N 12.498 39.480 60.608 -4.229 -2.153 7.042 HC2  PNE 38 
PNE HC6  HC6  H 0  1 N N N 11.108 35.872 62.717 -6.222 -4.023 3.717 HC6  PNE 39 
PNE HC5  HC5  H 0  1 N N N 8.825  36.933 62.904 -8.330 -2.914 4.351 HC5  PNE 40 
PNE HC3  HC3  H 0  1 N N N 10.217 40.503 60.812 -6.332 -1.040 7.682 HC3  PNE 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PNE P1  O1   SING N N 1  
PNE P1  O2   SING N N 2  
PNE P1  O3   DOUB N N 3  
PNE P1  C8   SING N N 4  
PNE O1  C1   SING N N 5  
PNE O2  HO2  SING N N 6  
PNE C8  C9   SING N N 7  
PNE C8  HC81 SING N N 8  
PNE C8  HC82 SING N N 9  
PNE C9  C10  SING N N 10 
PNE C9  HC91 SING N N 11 
PNE C9  HC92 SING N N 12 
PNE C10 C11  SING N N 13 
PNE C10 H101 SING N N 14 
PNE C10 H102 SING N N 15 
PNE C11 N2   SING N N 16 
PNE C11 O6   DOUB N N 17 
PNE N2  C12  SING N N 18 
PNE N2  HN2  SING N N 19 
PNE C12 C1L  SING N N 20 
PNE C12 C13  SING N N 21 
PNE C12 H12  SING N N 22 
PNE C1L H1L1 SING N N 23 
PNE C1L H1L2 SING N N 24 
PNE C1L H1L3 SING N N 25 
PNE C13 O7   DOUB N N 26 
PNE C13 O8   SING N N 27 
PNE O8  HO8  SING N N 28 
PNE C1  C2   DOUB Y N 29 
PNE C1  C6   SING Y N 30 
PNE C2  C3   SING Y N 31 
PNE C2  HC2  SING N N 32 
PNE C6  C5   DOUB Y N 33 
PNE C6  HC6  SING N N 34 
PNE C4  C5   SING Y N 35 
PNE C4  C3   DOUB Y N 36 
PNE C4  N1   SING N N 37 
PNE C5  HC5  SING N N 38 
PNE C3  HC3  SING N N 39 
PNE N1  O4   DOUB N N 40 
PNE N1  O5   SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PNE SMILES           ACDLabs              10.04 "O=P(Oc1ccc(cc1)[N+]([O-])=O)(O)CCCC(=O)NC(C(=O)O)C"                                                                                                
PNE SMILES_CANONICAL CACTVS               3.341 "C[C@@H](NC(=O)CCC[P@](O)(=O)Oc1ccc(cc1)[N+]([O-])=O)C(O)=O"                                                                                        
PNE SMILES           CACTVS               3.341 "C[CH](NC(=O)CCC[P](O)(=O)Oc1ccc(cc1)[N+]([O-])=O)C(O)=O"                                                                                           
PNE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C(=O)O)NC(=O)CCC[P@@](=O)(O)Oc1ccc(cc1)[N+](=O)[O-]"                                                                                            
PNE SMILES           "OpenEye OEToolkits" 1.5.0 "CC(C(=O)O)NC(=O)CCCP(=O)(O)Oc1ccc(cc1)[N+](=O)[O-]"                                                                                                
PNE InChI            InChI                1.03  "InChI=1S/C13H17N2O8P/c1-9(13(17)18)14-12(16)3-2-8-24(21,22)23-11-6-4-10(5-7-11)15(19)20/h4-7,9H,2-3,8H2,1H3,(H,14,16)(H,17,18)(H,21,22)/t9-/m1/s1" 
PNE InChIKey         InChI                1.03  KBXXIYHMPQZHCH-SECBINFHSA-N                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PNE "SYSTEMATIC NAME" ACDLabs              10.04 "N-{4-[(R)-hydroxy(4-nitrophenoxy)phosphoryl]butanoyl}-D-alanine"       
PNE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[4-[hydroxy-(4-nitrophenoxy)phosphoryl]butanoylamino]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PNE "Create component"  2002-01-03 RCSB 
PNE "Modify descriptor" 2011-06-04 RCSB 
# 
