data_RSE
# 
_chem_comp.id                                    RSE 
_chem_comp.name                                  "[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl [phosphonooxy(selanyl)phosphoryl] hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H21 N5 O13 P3 Se" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2016-10-28 
_chem_comp.pdbx_modified_date                    2017-11-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        615.202 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RSE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5M7X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RSE OC2   O1  O  0 1 N N N -72.403 -64.979 21.999 -2.738 -2.949 0.219  OC2   RSE 1  
RSE PC    P1  P  0 1 N N N -73.732 -64.439 21.514 -2.074 -1.512 0.512  PC    RSE 2  
RSE OC1   O2  O  0 1 N N N -73.989 -64.306 20.036 -2.001 -1.291 1.973  OC1   RSE 3  
RSE OBC   O3  O  0 1 N N N -74.039 -63.078 22.310 -2.972 -0.359 -0.162 OBC   RSE 4  
RSE PB    P2  P  0 1 N N R -73.865 -61.593 21.728 -4.333 0.389  0.262  PB    RSE 5  
RSE OB    O4  O  0 1 N N N -74.628 -61.446 20.479 -4.135 1.078  1.557  OB    RSE 6  
RSE SEB   SE1 SE 0 0 N N N -71.864 -61.064 21.406 -6.003 -1.135 0.463  SEB   RSE 7  
RSE OAB   O5  O  0 1 N N N -74.548 -60.665 22.846 -4.726 1.470  -0.866 OAB   RSE 8  
RSE PA    P3  P  0 1 N N N -74.421 -60.792 24.447 -5.937 2.516  -1.039 PA    RSE 9  
RSE OA2   O6  O  0 1 N N N -75.836 -61.139 24.857 -7.274 1.724  -1.461 OA2   RSE 10 
RSE OA1   O7  O  0 1 N N N -73.419 -61.887 24.728 -6.165 3.222  0.241  OA1   RSE 11 
RSE OA3   O8  O  0 1 N N N -73.951 -59.316 24.885 -5.563 3.586  -2.183 OA3   RSE 12 
RSE "O5'" O9  O  0 1 N N N -74.872 -65.355 22.177 -0.590 -1.470 -0.112 "O5'" RSE 13 
RSE "C5'" C1  C  0 1 N N N -76.235 -64.989 22.013 0.475  -2.301 0.355  "C5'" RSE 14 
RSE "C4'" C2  C  0 1 N N R -77.045 -66.258 22.195 1.742  -2.007 -0.451 "C4'" RSE 15 
RSE "C3'" C3  C  0 1 N N R -76.821 -66.910 23.539 2.872  -2.981 -0.049 "C3'" RSE 16 
RSE "O3'" O10 O  0 1 N N N -77.682 -66.313 24.504 2.962  -4.057 -0.985 "O3'" RSE 17 
RSE "C2'" C4  C  0 1 N N R -77.218 -68.332 23.248 4.149  -2.113 -0.098 "C2'" RSE 18 
RSE "O2'" O11 O  0 1 N N N -78.643 -68.427 23.277 5.068  -2.627 -1.065 "O2'" RSE 19 
RSE CM2   C5  C  0 1 N N N -79.098 -69.785 23.253 6.007  -3.563 -0.534 CM2   RSE 20 
RSE "C1'" C6  C  0 1 N N R -76.706 -68.523 21.833 3.640  -0.718 -0.523 "C1'" RSE 21 
RSE "O4'" O12 O  0 1 N N N -76.600 -67.222 21.259 2.251  -0.696 -0.126 "O4'" RSE 22 
RSE N9    N1  N  0 1 Y N N -75.356 -69.108 21.929 4.387  0.332  0.175  N9    RSE 23 
RSE C4    C7  C  0 1 Y N N -75.158 -70.409 22.198 5.587  0.864  -0.212 C4    RSE 24 
RSE N3    N2  N  0 1 N N N -76.023 -71.421 22.387 6.415  0.649  -1.240 N3    RSE 25 
RSE C2    C8  C  0 1 N N N -75.543 -72.661 22.631 7.535  1.326  -1.365 C2    RSE 26 
RSE N2    N3  N  0 1 N N N -76.403 -73.671 22.830 8.353  1.070  -2.436 N2    RSE 27 
RSE N1    N4  N  0 1 N N N -74.204 -72.890 22.679 7.906  2.276  -0.460 N1    RSE 28 
RSE C6    C9  C  0 1 N N N -73.315 -71.889 22.482 7.120  2.549  0.604  C6    RSE 29 
RSE O6    O13 O  0 1 N N N -71.996 -72.170 22.553 7.443  3.397  1.419  O6    RSE 30 
RSE C5    C10 C  0 1 Y N N -73.809 -70.611 22.252 5.912  1.827  0.751  C5    RSE 31 
RSE N7    N5  N  1 1 Y N N -73.176 -69.442 22.017 4.911  1.836  1.665  N7    RSE 32 
RSE CM7   C11 C  0 1 N N N -71.718 -69.156 21.970 4.851  2.701  2.846  CM7   RSE 33 
RSE C8    C12 C  0 1 Y N N -74.149 -68.497 21.838 4.010  0.962  1.325  C8    RSE 34 
RSE H1    H1  H  0 1 N N N -71.852 -65.183 21.252 -2.817 -3.162 -0.721 H1    RSE 35 
RSE H2    H2  H  0 1 N N N -71.114 -61.213 22.650 -6.042 -1.727 -0.980 H2    RSE 36 
RSE H3    H3  H  0 1 N N N -75.853 -62.012 25.232 -7.196 1.237  -2.293 H3    RSE 37 
RSE H4    H4  H  0 1 N N N -73.083 -59.360 25.268 -6.249 4.248  -2.341 H4    RSE 38 
RSE H5    H5  H  0 1 N N N -76.522 -64.243 22.769 0.659  -2.097 1.410  H5    RSE 39 
RSE H6    H6  H  0 1 N N N -76.399 -64.574 21.008 0.199  -3.348 0.230  H6    RSE 40 
RSE H7    H7  H  0 1 N N N -78.114 -66.038 22.061 1.537  -2.083 -1.519 H7    RSE 41 
RSE H8    H8  H  0 1 N N N -75.763 -66.849 23.832 2.706  -3.364 0.957  H8    RSE 42 
RSE H9    H9  H  0 1 N N N -77.542 -66.722 25.350 2.163  -4.599 -1.040 H9    RSE 43 
RSE H10   H10 H  0 1 N N N -76.734 -69.033 23.944 4.618  -2.068 0.886  H10   RSE 44 
RSE H11   H11 H  0 1 N N N -80.198 -69.804 23.277 6.668  -3.906 -1.330 H11   RSE 45 
RSE H12   H12 H  0 1 N N N -78.743 -70.274 22.334 6.598  -3.083 0.246  H12   RSE 46 
RSE H13   H13 H  0 1 N N N -78.703 -70.319 24.130 5.473  -4.415 -0.113 H13   RSE 47 
RSE H14   H14 H  0 1 N N N -77.383 -69.173 21.260 3.730  -0.594 -1.602 H14   RSE 48 
RSE H15   H15 H  0 1 N N N -77.388 -73.503 22.797 8.102  0.397  -3.088 H15   RSE 49 
RSE H16   H16 H  0 1 N N N -76.059 -74.592 23.011 9.182  1.562  -2.541 H16   RSE 50 
RSE H17   H17 H  0 1 N N N -73.870 -73.814 22.863 8.738  2.759  -0.582 H17   RSE 51 
RSE H18   H18 H  0 1 N N N -71.156 -70.085 22.144 4.342  3.630  2.590  H18   RSE 52 
RSE H19   H19 H  0 1 N N N -71.456 -68.749 20.982 4.303  2.193  3.640  H19   RSE 53 
RSE H20   H20 H  0 1 N N N -71.463 -68.422 22.748 5.862  2.923  3.186  H20   RSE 54 
RSE H21   H21 H  0 1 N N N -73.984 -67.445 21.656 3.101  0.762  1.874  H21   RSE 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RSE OC1   PC    DOUB N N 1  
RSE OB    PB    DOUB N N 2  
RSE "O4'" "C1'" SING N N 3  
RSE "O4'" "C4'" SING N N 4  
RSE SEB   PB    SING N N 5  
RSE PC    OC2   SING N N 6  
RSE PC    "O5'" SING N N 7  
RSE PC    OBC   SING N N 8  
RSE PB    OBC   SING N N 9  
RSE PB    OAB   SING N N 10 
RSE "C1'" N9    SING N N 11 
RSE "C1'" "C2'" SING N N 12 
RSE C8    N9    SING Y N 13 
RSE C8    N7    DOUB Y N 14 
RSE N9    C4    SING Y N 15 
RSE CM7   N7    SING N N 16 
RSE "C5'" "O5'" SING N N 17 
RSE "C5'" "C4'" SING N N 18 
RSE N7    C5    SING Y N 19 
RSE "C4'" "C3'" SING N N 20 
RSE C4    C5    DOUB Y N 21 
RSE C4    N3    SING N N 22 
RSE C5    C6    SING N N 23 
RSE N3    C2    DOUB N N 24 
RSE C6    O6    DOUB N N 25 
RSE C6    N1    SING N N 26 
RSE C2    N1    SING N N 27 
RSE C2    N2    SING N N 28 
RSE OAB   PA    SING N N 29 
RSE "C2'" "O2'" SING N N 30 
RSE "C2'" "C3'" SING N N 31 
RSE CM2   "O2'" SING N N 32 
RSE "C3'" "O3'" SING N N 33 
RSE PA    OA1   DOUB N N 34 
RSE PA    OA2   SING N N 35 
RSE PA    OA3   SING N N 36 
RSE OC2   H1    SING N N 37 
RSE SEB   H2    SING N N 38 
RSE OA2   H3    SING N N 39 
RSE OA3   H4    SING N N 40 
RSE "C5'" H5    SING N N 41 
RSE "C5'" H6    SING N N 42 
RSE "C4'" H7    SING N N 43 
RSE "C3'" H8    SING N N 44 
RSE "O3'" H9    SING N N 45 
RSE "C2'" H10   SING N N 46 
RSE CM2   H11   SING N N 47 
RSE CM2   H12   SING N N 48 
RSE CM2   H13   SING N N 49 
RSE "C1'" H14   SING N N 50 
RSE N2    H15   SING N N 51 
RSE N2    H16   SING N N 52 
RSE N1    H17   SING N N 53 
RSE CM7   H18   SING N N 54 
RSE CM7   H19   SING N N 55 
RSE CM7   H20   SING N N 56 
RSE C8    H21   SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RSE InChI            InChI                1.03  
"InChI=1S/C12H20N5O13P3Se/c1-16-4-17(9-6(16)10(19)15-12(13)14-9)11-8(26-2)7(18)5(28-11)3-27-32(23,24)30-33(25,34)29-31(20,21)22/h4-5,7-8,11,18H,3H2,1-2H3,(H6-,13,14,15,19,20,21,22,23,24,25,34)/p+1/t5-,7-,8-,11-,33-/m1/s1" 
RSE InChIKey         InChI                1.03  FCPLZYTYUZTIIR-ZRDSBRMSSA-O 
RSE SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(=O)O[P@@]([SeH])(=O)O[P](O)(O)=O)O[C@H]1n2c[n+](C)c3C(=O)NC(=Nc23)N" 
RSE SMILES           CACTVS               3.385 "CO[CH]1[CH](O)[CH](CO[P](O)(=O)O[P]([SeH])(=O)O[P](O)(O)=O)O[CH]1n2c[n+](C)c3C(=O)NC(=Nc23)N" 
RSE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[n+]1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[P@@](=O)(OP(=O)(O)O)[SeH])O)OC" 
RSE SMILES           "OpenEye OEToolkits" 2.0.6 "C[n+]1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(OP(=O)(O)O)[SeH])O)OC" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RSE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl [phosphonooxy(selanyl)phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RSE "Create component" 2016-10-28 EBI  
RSE "Initial release"  2017-11-29 RCSB 
# 
