data_SSE
# 
_chem_comp.id                                    SSE 
_chem_comp.name                                  "1,4-DIDEOXY-1,4-[[2S,3S)-2,4-DIHYDROXY-3-(SULFOXY)BUTYL]EPISELENONIUMYLIDENE]-D-ARABINITOL INNER SALT" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H18 O9 S Se" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "SELENO-SALACINOL; BLINTOL" 
_chem_comp.pdbx_formal_charge                    -2 
_chem_comp.pdbx_initial_date                     2004-06-22 
_chem_comp.pdbx_modified_date                    2020-05-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        381.259 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SSE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        1TQV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SSE C1   C1   C  0  1 N N S 31.621 66.207 6.850  ? ? ? C1   SSE 1  
SSE O1   O1   O  0  1 N N N 31.578 67.220 5.843  ? ? ? O1   SSE 2  
SSE C2   C2   C  0  1 N N S 32.735 66.414 7.851  ? ? ? C2   SSE 3  
SSE O2   O2   O  0  1 N N N 33.861 65.780 7.298  ? ? ? O2   SSE 4  
SSE C3   C3   C  0  1 N N N 32.390 66.091 9.294  ? ? ? C3   SSE 5  
SSE SE4  SE4  SE 1  0 N N S 30.684 65.182 9.168  ? ? ? SE4  SSE 6  
SSE C5   C5   C  0  1 N N R 30.361 66.434 7.670  ? ? ? C5   SSE 7  
SSE C6   C6   C  0  1 N N N 29.100 66.222 6.857  ? ? ? C6   SSE 8  
SSE O6   O6   O  0  1 N N N 27.820 66.332 7.453  ? ? ? O6   SSE 9  
SSE C7   C7   C  0  1 N N N 29.714 66.115 10.577 ? ? ? C7   SSE 10 
SSE C8   C8   C  0  1 N N S 28.376 65.376 10.537 ? ? ? C8   SSE 11 
SSE O8   O8   O  0  1 N N N 28.300 63.915 10.617 ? ? ? O8   SSE 12 
SSE C9   C9   C  0  1 N N R 27.544 66.036 11.590 ? ? ? C9   SSE 13 
SSE C10  C10  C  0  1 N N N 26.961 65.252 12.738 ? ? ? C10  SSE 14 
SSE O10  O10  O  0  1 N N N 25.635 65.722 12.603 ? ? ? O10  SSE 15 
SSE O9   O9   O  0  1 N N N 27.520 67.471 11.483 ? ? ? O9   SSE 16 
SSE S9   S9   S  0  1 N N N 27.414 68.529 12.527 ? ? ? S9   SSE 17 
SSE O11  O11  O  -1 1 N N N 26.926 67.979 13.802 ? ? ? O11  SSE 18 
SSE O12  O12  O  -1 1 N N N 26.509 69.525 11.982 ? ? ? O12  SSE 19 
SSE O13  O13  O  -1 1 N N N 28.785 68.993 12.663 ? ? ? O13  SSE 20 
SSE H1   H1   H  0  1 N N N 31.743 65.215 6.355  ? ? ? H1   SSE 21 
SSE HO1  HO1  H  0  1 N N N 30.878 67.090 5.214  ? ? ? HO1  SSE 22 
SSE H2   H2   H  0  1 N N N 32.956 67.498 7.993  ? ? ? H2   SSE 23 
SSE HO2  HO2  H  0  1 N N N 34.561 65.910 7.927  ? ? ? HO2  SSE 24 
SSE H31  1H3  H  0  1 N N N 32.392 66.973 9.976  ? ? ? H31  SSE 25 
SSE H32  2H3  H  0  1 N N N 33.177 65.519 9.838  ? ? ? H32  SSE 26 
SSE H5   H5   H  0  1 N N N 30.181 67.474 8.030  ? ? ? H5   SSE 27 
SSE H61  1H6  H  0  1 N N N 29.169 65.223 6.366  ? ? ? H61  SSE 28 
SSE H62  2H6  H  0  1 N N N 29.134 66.910 5.980  ? ? ? H62  SSE 29 
SSE HO6  HO6  H  0  1 N N N 27.029 66.199 6.943  ? ? ? HO6  SSE 30 
SSE H71  1H7  H  0  1 N N N 29.655 67.223 10.469 ? ? ? H71  SSE 31 
SSE H72  2H7  H  0  1 N N N 30.219 66.144 11.571 ? ? ? H72  SSE 32 
SSE H8   H8   H  0  1 N N N 28.018 65.473 9.485  ? ? ? H8   SSE 33 
SSE HO8  HO8  H  0  1 N N N 27.469 63.456 10.592 ? ? ? HO8  SSE 34 
SSE H9   H9   H  0  1 N N N 26.464 65.784 11.709 ? ? ? H9   SSE 35 
SSE H101 1H10 H  0  0 N N N 27.445 65.373 13.735 ? ? ? H101 SSE 36 
SSE H102 2H10 H  0  0 N N N 27.113 64.147 12.729 ? ? ? H102 SSE 37 
SSE H10  H10  H  0  1 N N N 25.268 65.228 13.327 ? ? ? H10  SSE 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SSE C1  O1   SING N N 1  
SSE C1  C2   SING N N 2  
SSE C1  C5   SING N N 3  
SSE C1  H1   SING N N 4  
SSE O1  HO1  SING N N 5  
SSE C2  O2   SING N N 6  
SSE C2  C3   SING N N 7  
SSE C2  H2   SING N N 8  
SSE O2  HO2  SING N N 9  
SSE C3  SE4  SING N N 10 
SSE C3  H31  SING N N 11 
SSE C3  H32  SING N N 12 
SSE SE4 C5   SING N N 13 
SSE SE4 C7   SING N N 14 
SSE C5  C6   SING N N 15 
SSE C5  H5   SING N N 16 
SSE C6  O6   SING N N 17 
SSE C6  H61  SING N N 18 
SSE C6  H62  SING N N 19 
SSE O6  HO6  SING N N 20 
SSE C7  C8   SING N N 21 
SSE C7  H71  SING N N 22 
SSE C7  H72  SING N N 23 
SSE C8  O8   SING N N 24 
SSE C8  C9   SING N N 25 
SSE C8  H8   SING N N 26 
SSE O8  HO8  SING N N 27 
SSE C9  C10  SING N N 28 
SSE C9  O9   SING N N 29 
SSE C9  H9   SING N N 30 
SSE C10 O10  SING N N 31 
SSE C10 H101 SING N N 32 
SSE C10 H102 SING N N 33 
SSE O10 H10  SING N N 34 
SSE O9  S9   SING N N 35 
SSE S9  O11  SING N N 36 
SSE S9  O12  SING N N 37 
SSE S9  O13  SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SSE SMILES           ACDLabs              10.04 "[O-]S([O-])([O-])OC(CO)C(O)C[Se+]1C(CO)C(O)C(O)C1"                                                                                    
SSE SMILES_CANONICAL CACTVS               3.341 "OC[C@@H](O[S]([O-])([O-])[O-])[C@H](O)C[Se@+]1C[C@@H](O)[C@H](O)[C@H]1CO"                                                             
SSE SMILES           CACTVS               3.341 "OC[CH](O[S]([O-])([O-])[O-])[CH](O)C[Se+]1C[CH](O)[CH](O)[CH]1CO"                                                                     
SSE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@@H]([C@H]([Se@@+]1C[C@H](C(CO)OS([O-])([O-])[O-])O)CO)O)O"                                                                 
SSE SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(C([Se+]1CC(C(CO)OS([O-])([O-])[O-])O)CO)O)O"                                                                                    
SSE InChI            InChI                1.03  "InChI=1S/C9H20O9SSe/c10-1-7(18-19(15,16)17)5(12)3-20-4-6(13)9(14)8(20)2-11/h5-14H,1-4H2,(H2-,15,16,17)/p-2/t5-,6-,7-,8-,9+,20-/m1/s1" 
SSE InChIKey         InChI                1.03  WLNWUNIGATZIKW-ZCYZNMBRSA-L                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           SSE 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   10.04 
_pdbx_chem_comp_identifier.identifier        "({[(1R,2S)-3-[(2R,3S,4S)-3,4-dihydroxy-2-(hydroxymethyl)tetrahydroselenophenium-1-yl]-2-hydroxy-1-(hydroxymethyl)propyl]oxy}-lambda~4~-sulfanetriyl)trioxidanide (non-preferred name)" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SSE "Create component"  2004-06-22 RCSB 
SSE "Modify descriptor" 2011-06-04 RCSB 
SSE "Modify synonyms"   2020-05-27 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 SSE SELENO-SALACINOL ? ? 
2 SSE BLINTOL          ? ? 
# 
