data_A1ITF
# 
_chem_comp.id                                    A1ITF 
_chem_comp.name                                  "4-[(3~{S},5~{R})-3-[2-[(3~{R})-3-fluoranylpyrrolidin-1-yl]pyrimidin-4-yl]-5-methoxy-piperidin-1-yl]carbonyl-1~{H}-pyrrole-2-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H23 F N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-10-30 
_chem_comp.pdbx_modified_date                    2025-01-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        398.434 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ITF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9H8S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ITF N1  N1  N 0 1 Y N N N N N 3.161 53.984 53.899 -6.333 -0.747 1.508  N1  A1ITF 1  
A1ITF N3  N2  N 0 1 Y N N N N N 7.975 59.537 51.045 4.150  -1.417 -1.301 N3  A1ITF 2  
A1ITF C4  C1  C 0 1 N N N N N N 5.968 55.210 50.062 -0.729 -1.243 -0.585 C4  A1ITF 3  
A1ITF C5  C2  C 0 1 N N N N N N 5.274 53.757 48.228 -2.460 0.594  -0.733 C5  A1ITF 4  
A1ITF C6  C3  C 0 1 N N N N N N 4.139 53.564 50.403 -2.938 -1.502 0.439  C6  A1ITF 5  
A1ITF C7  C4  C 0 1 Y N N N N N 3.906 54.067 51.801 -4.327 -1.050 0.631  C7  A1ITF 6  
A1ITF C8  C5  C 0 1 Y N N N N N 3.454 53.226 52.808 -5.146 -1.347 1.702  C8  A1ITF 7  
A1ITF C10 C6  C 0 1 Y N N N N N 3.910 55.377 52.348 -5.074 -0.230 -0.247 C10 A1ITF 8  
A1ITF C13 C7  C 0 1 Y N N N N N 7.451 58.246 49.092 1.862  -1.301 -1.755 C13 A1ITF 9  
A1ITF C15 C8  C 0 1 Y N N N N N 6.981 58.865 51.653 3.944  -0.794 -0.150 C15 A1ITF 10 
A1ITF C17 C9  C 0 1 N N N N N N 7.107 59.791 55.192 7.395  -0.228 0.796  C17 A1ITF 11 
A1ITF F   F1  F 0 1 N N N N N N 4.794 60.245 54.885 7.303  2.184  0.696  F   A1ITF 12 
A1ITF C18 C10 C 0 1 N N R N N N 5.720 59.204 55.054 6.707  1.063  1.284  C18 A1ITF 13 
A1ITF C16 C11 C 0 1 N N N N N N 7.498 60.127 53.759 6.286  -1.032 0.083  C16 A1ITF 14 
A1ITF C19 C12 C 0 1 N N N N N N 5.754 58.436 53.780 5.239  0.934  0.825  C19 A1ITF 15 
A1ITF N5  N3  N 0 1 N N N N N N 6.750 59.140 52.972 5.020  -0.531 0.679  N5  A1ITF 16 
A1ITF C14 C13 C 0 1 Y N N N N N 8.185 59.201 49.762 3.144  -1.683 -2.116 C14 A1ITF 17 
A1ITF N4  N4  N 0 1 Y N N N N N 6.196 57.918 51.095 2.730  -0.415 0.225  N4  A1ITF 18 
A1ITF C12 C14 C 0 1 Y N N N N N 6.454 57.617 49.814 1.681  -0.650 -0.545 C12 A1ITF 19 
A1ITF C3  C15 C 0 1 N N S N N N 5.631 56.478 49.264 0.304  -0.216 -0.110 C3  A1ITF 20 
A1ITF C2  C16 C 0 1 N N N N N N 5.736 56.192 47.756 -0.019 1.148  -0.724 C2  A1ITF 21 
A1ITF N   N5  N 0 1 N N N N N N 5.087 54.124 49.633 -2.075 -0.746 -0.268 N   A1ITF 22 
A1ITF C1  C17 C 0 1 N N R N N N 4.904 54.966 47.390 -1.403 1.604  -0.257 C1  A1ITF 23 
A1ITF O   O1  O 0 1 N N N N N N 4.434 54.606 46.085 -1.691 2.891  -0.806 O   A1ITF 24 
A1ITF C   C18 C 0 1 N N N N N N 5.366 54.808 45.057 -2.543 3.695  0.013  C   A1ITF 25 
A1ITF O1  O2  O 0 1 N N N N N N 3.427 52.654 50.004 -2.570 -2.558 0.918  O1  A1ITF 26 
A1ITF C9  C19 C 0 1 Y N N N N N 3.429 55.302 53.631 -6.304 -0.061 0.315  C9  A1ITF 27 
A1ITF C11 C20 C 0 1 N N N N N N 3.157 56.356 54.556 -7.381 0.703  -0.240 C11 A1ITF 28 
A1ITF N2  N6  N 0 1 N N N N N N 2.915 57.157 55.330 -8.236 1.309  -0.680 N2  A1ITF 29 
A1ITF H1  H1  H 0 1 N N N N N N 2.804 53.633 54.765 -7.091 -0.793 2.112  H1  A1ITF 30 
A1ITF H2  H2  H 0 1 N N N N N N 7.015 54.928 49.880 -0.636 -1.385 -1.661 H2  A1ITF 31 
A1ITF H3  H3  H 0 1 N N N N N N 5.821 55.401 51.135 -0.561 -2.192 -0.076 H3  A1ITF 32 
A1ITF H4  H4  H 0 1 N N N N N N 4.623 52.908 47.971 -2.508 0.602  -1.822 H4  A1ITF 33 
A1ITF H5  H5  H 0 1 N N N N N N 6.324 53.482 48.048 -3.435 0.857  -0.322 H5  A1ITF 34 
A1ITF H6  H6  H 0 1 N N N N N N 3.352 52.153 52.738 -4.879 -1.958 2.552  H6  A1ITF 35 
A1ITF H7  H7  H 0 1 N N N N N N 4.235 56.275 51.843 -4.733 0.183  -1.185 H7  A1ITF 36 
A1ITF H8  H8  H 0 1 N N N N N N 7.645 58.002 48.058 1.022  -1.505 -2.403 H8  A1ITF 37 
A1ITF H9  H9  H 0 1 N N N N N N 7.802 59.058 55.627 8.197  0.011  0.097  H9  A1ITF 38 
A1ITF H10 H10 H 0 1 N N N N N N 7.090 60.696 55.817 7.787  -0.792 1.642  H10 A1ITF 39 
A1ITF H11 H11 H 0 1 N N N N N N 5.479 58.554 55.908 6.761  1.133  2.371  H11 A1ITF 40 
A1ITF H12 H12 H 0 1 N N N N N N 8.582 60.014 53.608 6.304  -0.837 -0.989 H12 A1ITF 41 
A1ITF H13 H13 H 0 1 N N N N N N 7.197 61.152 53.497 6.404  -2.098 0.278  H13 A1ITF 42 
A1ITF H14 H14 H 0 1 N N N N N N 4.770 58.450 53.288 4.567  1.346  1.579  H14 A1ITF 43 
A1ITF H15 H15 H 0 1 N N N N N N 6.060 57.395 53.959 5.093  1.439  -0.130 H15 A1ITF 44 
A1ITF H16 H16 H 0 1 N N N N N N 8.973 59.708 49.225 3.319  -2.192 -3.053 H16 A1ITF 45 
A1ITF H17 H17 H 0 1 N N N N N N 4.576 56.712 49.470 0.272  -0.144 0.977  H17 A1ITF 46 
A1ITF H18 H18 H 0 1 N N N N N N 6.788 56.008 47.494 0.729  1.875  -0.408 H18 A1ITF 47 
A1ITF H19 H19 H 0 1 N N N N N N 5.366 57.063 47.195 -0.011 1.068  -1.811 H19 A1ITF 48 
A1ITF H20 H20 H 0 1 N N N N N N 3.953 55.240 47.871 -1.420 1.660  0.831  H20 A1ITF 49 
A1ITF H21 H21 H 0 1 N N N N N N 4.924 54.507 44.096 -2.713 4.656  -0.474 H21 A1ITF 50 
A1ITF H22 H22 H 0 1 N N N N N N 5.642 55.872 45.016 -3.496 3.186  0.155  H22 A1ITF 51 
A1ITF H23 H23 H 0 1 N N N N N N 6.264 54.204 45.252 -2.069 3.857  0.981  H23 A1ITF 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ITF C   O   SING N N 1  
A1ITF O   C1  SING N N 2  
A1ITF C1  C2  SING N N 3  
A1ITF C1  C5  SING N N 4  
A1ITF C2  C3  SING N N 5  
A1ITF C5  N   SING N N 6  
A1ITF C13 C14 DOUB Y N 7  
A1ITF C13 C12 SING Y N 8  
A1ITF C3  C12 SING N N 9  
A1ITF C3  C4  SING N N 10 
A1ITF N   C4  SING N N 11 
A1ITF N   C6  SING N N 12 
A1ITF C14 N3  SING Y N 13 
A1ITF C12 N4  DOUB Y N 14 
A1ITF O1  C6  DOUB N N 15 
A1ITF C6  C7  SING N N 16 
A1ITF N3  C15 DOUB Y N 17 
A1ITF N4  C15 SING Y N 18 
A1ITF C15 N5  SING N N 19 
A1ITF C7  C10 SING Y N 20 
A1ITF C7  C8  DOUB Y N 21 
A1ITF C10 C9  DOUB Y N 22 
A1ITF C8  N1  SING Y N 23 
A1ITF N5  C16 SING N N 24 
A1ITF N5  C19 SING N N 25 
A1ITF C9  N1  SING Y N 26 
A1ITF C9  C11 SING N N 27 
A1ITF C16 C17 SING N N 28 
A1ITF C19 C18 SING N N 29 
A1ITF C11 N2  TRIP N N 30 
A1ITF F   C18 SING N N 31 
A1ITF C18 C17 SING N N 32 
A1ITF N1  H1  SING N N 33 
A1ITF C4  H2  SING N N 34 
A1ITF C4  H3  SING N N 35 
A1ITF C5  H4  SING N N 36 
A1ITF C5  H5  SING N N 37 
A1ITF C8  H6  SING N N 38 
A1ITF C10 H7  SING N N 39 
A1ITF C13 H8  SING N N 40 
A1ITF C17 H9  SING N N 41 
A1ITF C17 H10 SING N N 42 
A1ITF C18 H11 SING N N 43 
A1ITF C16 H12 SING N N 44 
A1ITF C16 H13 SING N N 45 
A1ITF C19 H14 SING N N 46 
A1ITF C19 H15 SING N N 47 
A1ITF C14 H16 SING N N 48 
A1ITF C3  H17 SING N N 49 
A1ITF C2  H18 SING N N 50 
A1ITF C2  H19 SING N N 51 
A1ITF C1  H20 SING N N 52 
A1ITF C   H21 SING N N 53 
A1ITF C   H22 SING N N 54 
A1ITF C   H23 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ITF InChI            InChI                1.06  "InChI=1S/C20H23FN6O2/c1-29-17-7-14(10-27(12-17)19(28)13-6-16(8-22)24-9-13)18-2-4-23-20(25-18)26-5-3-15(21)11-26/h2,4,6,9,14-15,17,24H,3,5,7,10-12H2,1H3/t14-,15+,17+/m0/s1" 
A1ITF InChIKey         InChI                1.06  OVZHFGJRKASRRF-ZMSDIMECSA-N                                                                                                                                                  
A1ITF SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1C[C@@H](CN(C1)C(=O)c2c[nH]c(c2)C#N)c3ccnc(n3)N4CC[C@@H](F)C4"                                                                                                      
A1ITF SMILES           CACTVS               3.385 "CO[CH]1C[CH](CN(C1)C(=O)c2c[nH]c(c2)C#N)c3ccnc(n3)N4CC[CH](F)C4"                                                                                                            
A1ITF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@@H]1C[C@@H](CN(C1)C(=O)c2cc([nH]c2)C#N)c3ccnc(n3)N4CC[C@H](C4)F"                                                                                                       
A1ITF SMILES           "OpenEye OEToolkits" 2.0.7 "COC1CC(CN(C1)C(=O)c2cc([nH]c2)C#N)c3ccnc(n3)N4CCC(C4)F"                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           A1ITF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[(3~{S},5~{R})-3-[2-[(3~{R})-3-fluoranylpyrrolidin-1-yl]pyrimidin-4-yl]-5-methoxy-piperidin-1-yl]carbonyl-1~{H}-pyrrole-2-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ITF "Create component" 2024-10-30 PDBE 
A1ITF "Initial release"  2025-01-22 RCSB 
# 
