data_NCF
# 
_chem_comp.id                                    NCF 
_chem_comp.name                                  "(2R)-2-{(1R)-2-OXO-1-[(2-THIENYLACETYL)AMINO]ETHYL}-5,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H14 N2 O5 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "NITROCEFIN, open form without dinitrophenyl-ethenyl group; (2R)-2-[(1R)-2-oxo-1-{[(thiophen-2-yl)acetyl]amino}ethyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-10-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        342.391 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NCF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1W8Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NCF S1    S1    S 0 1 N N N N N N -1.475 -0.305 38.986 -3.353 1.481  -0.658 S1    NCF 1  
NCF C2    C2    C 0 1 N N N N N N -3.264 -0.395 39.030 -4.799 0.451  -0.249 C2    NCF 2  
NCF C3    C3    C 0 1 N N N N N N -3.929 -1.688 39.390 -4.437 -1.005 -0.550 C3    NCF 3  
NCF C4    C4    C 0 1 N N N N N N -3.121 -2.984 39.234 -3.120 -1.380 0.039  C4    NCF 4  
NCF "C4'" "C4'" C 0 1 N N N N N N -3.703 -4.355 39.567 -2.893 -2.838 0.175  "C4'" NCF 5  
NCF O4A   O4A   O 0 1 N N N N N N -4.857 -4.514 39.980 -1.737 -3.294 0.695  O4A   NCF 6  
NCF O4B   O4B   O 0 1 N N N N N N -2.905 -5.256 39.379 -3.749 -3.622 -0.181 O4B   NCF 7  
NCF N5    N5    N 0 1 N N N N N N -1.808 -3.024 38.780 -2.179 -0.666 0.434  N5    NCF 8  
NCF C6    C6    C 0 1 N N R N N N -0.923 -1.943 38.364 -2.102 0.789  0.465  C6    NCF 9  
NCF C7    C7    C 0 1 N N R N N N -0.767 -1.993 36.738 -0.709 1.236  0.015  C7    NCF 10 
NCF C8    C8    C 0 1 N N N N N N -0.872 -3.505 36.335 -0.590 2.731  0.159  C8    NCF 11 
NCF O9    O9    O 0 1 N N N N N N -1.799 -3.913 35.594 0.255  3.203  0.882  O9    NCF 12 
NCF N10   N10   N 0 1 N N N N N N -1.915 -1.316 36.049 0.305  0.583  0.846  N10   NCF 13 
NCF C11   C11   C 0 1 N N N N N N -1.859 0.086  35.669 1.552  0.400  0.369  C11   NCF 14 
NCF O12   O12   O 0 1 N N N N N N -0.878 0.840  35.873 1.835  0.776  -0.749 O12   NCF 15 
NCF C13   C13   C 0 1 N N N N N N -3.130 0.605  34.996 2.596  -0.271 1.224  C13   NCF 16 
NCF C14   C14   C 0 1 Y N N N N N -2.795 1.213  33.666 3.894  -0.352 0.462  C14   NCF 17 
NCF C15   C15   C 0 1 Y N N N N N -2.755 0.550  32.339 4.851  0.576  0.474  C15   NCF 18 
NCF C16   C16   C 0 1 Y N N N N N -2.391 1.557  31.418 5.957  0.283  -0.305 C16   NCF 19 
NCF C17   C17   C 0 1 Y N N N N N -2.171 2.816  31.899 5.898  -0.883 -0.949 C17   NCF 20 
NCF S19   S19   S 0 1 Y N N N N N -2.416 2.836  33.605 4.380  -1.688 -0.573 S19   NCF 21 
NCF H2C1  H2C1  H 0 0 N N N N N N -3.604 0.354  39.760 -5.043 0.561  0.808  H2C1  NCF 22 
NCF H2C2  H2C2  H 0 0 N N N N N N -3.623 -0.119 38.028 -5.652 0.753  -0.858 H2C2  NCF 23 
NCF H3C1  H3C1  H 0 0 N N N N N N -4.232 -1.617 40.445 -5.208 -1.656 -0.137 H3C1  NCF 24 
NCF H3C2  H3C2  H 0 0 N N N N N N -4.824 -1.783 38.757 -4.396 -1.145 -1.630 H3C2  NCF 25 
NCF H4A   H4A   H 0 1 N N N N N N -5.017 -5.439 40.125 -1.635 -4.253 0.764  H4A   NCF 26 
NCF H6    H6    H 0 1 N N N N N N 0.077  -2.098 38.795 -2.288 1.142  1.479  H6    NCF 27 
NCF H7    H7    H 0 1 N N N N N N 0.203  -1.570 36.437 -0.558 0.958  -1.028 H7    NCF 28 
NCF H10   H10   H 0 1 N N N N N N -2.740 -1.843 35.846 0.079  0.282  1.741  H10   NCF 29 
NCF H131  H131  H 0 0 N N N N N N -3.831 -0.230 34.849 2.745  0.307  2.136  H131  NCF 30 
NCF H132  H132  H 0 0 N N N N N N -3.597 1.367  35.638 2.263  -1.277 1.482  H132  NCF 31 
NCF H15   H15   H 0 1 N N N N N N -2.961 -0.488 32.122 4.770  1.488  1.048  H15   NCF 32 
NCF H16   H16   H 0 1 N N N N N N -2.290 1.338  30.365 6.804  0.949  -0.385 H16   NCF 33 
NCF H17   H17   H 0 1 N N N N N N -1.887 3.669  31.301 6.666  -1.274 -1.600 H17   NCF 34 
NCF OXY   OXY   O 0 1 N Y N N N N ?      ?      ?      -1.424 3.538  -0.516 OXY   NCF 35 
NCF HXY   HXY   H 0 1 N Y N N N N ?      ?      ?      -1.309 4.490  -0.391 HXY   NCF 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NCF S1    C2    SING N N 1  
NCF S1    C6    SING N N 2  
NCF C2    C3    SING N N 3  
NCF C2    H2C1  SING N N 4  
NCF C2    H2C2  SING N N 5  
NCF C3    C4    SING N N 6  
NCF C3    H3C1  SING N N 7  
NCF C3    H3C2  SING N N 8  
NCF C4    "C4'" SING N N 9  
NCF C4    N5    DOUB N N 10 
NCF "C4'" O4A   SING N N 11 
NCF "C4'" O4B   DOUB N N 12 
NCF O4A   H4A   SING N N 13 
NCF N5    C6    SING N N 14 
NCF C6    C7    SING N N 15 
NCF C6    H6    SING N N 16 
NCF C7    C8    SING N N 17 
NCF C7    N10   SING N N 18 
NCF C7    H7    SING N N 19 
NCF C8    O9    DOUB N N 20 
NCF N10   C11   SING N N 21 
NCF N10   H10   SING N N 22 
NCF C11   O12   DOUB N N 23 
NCF C11   C13   SING N N 24 
NCF C13   C14   SING N N 25 
NCF C13   H131  SING N N 26 
NCF C13   H132  SING N N 27 
NCF C14   C15   DOUB Y N 28 
NCF C14   S19   SING Y N 29 
NCF C15   C16   SING Y N 30 
NCF C15   H15   SING N N 31 
NCF C16   C17   DOUB Y N 32 
NCF C16   H16   SING N N 33 
NCF C17   S19   SING Y N 34 
NCF C17   H17   SING N N 35 
NCF C8    OXY   SING N N 36 
NCF OXY   HXY   SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NCF SMILES           ACDLabs              12.01 "S1CCC(C(O)=O)=NC1C(C=O)NC(=O)Cc2cccs2"                                                                                                                 
NCF InChI            InChI                1.03  "InChI=1S/C13H14N2O5S2/c16-9(6-7-2-1-4-21-7)15-10(13(19)20)11-14-8(12(17)18)3-5-22-11/h1-2,4,10-11H,3,5-6H2,(H,15,16)(H,17,18)(H,19,20)/t10-,11+/m0/s1" 
NCF InChIKey         InChI                1.03  LNPNJPUNJYVKHH-WDEREUQCSA-N                                                                                                                             
NCF SMILES_CANONICAL CACTVS               3.385 "OC(=O)[C@@H](NC(=O)Cc1sccc1)[C@H]2SCCC(=N2)C(O)=O"                                                                                                     
NCF SMILES           CACTVS               3.385 "OC(=O)[CH](NC(=O)Cc1sccc1)[CH]2SCCC(=N2)C(O)=O"                                                                                                        
NCF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)CC(=O)N[C@@H]([C@@H]2N=C(CCS2)C(=O)O)C(=O)O"                                                                                                  
NCF SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)CC(=O)NC(C2N=C(CCS2)C(=O)O)C(=O)O"                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NCF "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-[(1R)-2-oxo-1-{[(thiophen-2-yl)acetyl]amino}ethyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid"                               
NCF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[(1~{R})-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-5,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 NCF "NITROCEFIN, open form without dinitrophenyl-ethenyl group"                                               AUTHOR ? 
2 NCF "(2R)-2-[(1R)-2-oxo-1-{[(thiophen-2-yl)acetyl]amino}ethyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid" PDB    ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NCF "Create component"         2004-10-01 EBI  
NCF "Modify descriptor"        2011-06-04 RCSB 
NCF "Modify synonyms"          2018-12-19 RCSB 
NCF "Modify synonyms"          2020-06-05 PDBE 
NCF "Modify leaving atom flag" 2021-09-06 PDBE 
NCF "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            NCF 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
