data_T6F
#

_chem_comp.id                                   T6F
_chem_comp.name                                 "2-C-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium-2-yl}-6-O-phosphono-D-glucitol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H32 N4 O16 P3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "D-FRUCTOSE-6-PHOSPHATE THIAMIN DIPHOSPHATE ADDUCT"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2007-10-26
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       685.450
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    T6F
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2R8P
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T6F  O2A     O2A     O  0  1  N  N  N  16.952  -16.940   5.140   -5.027  -2.905  -1.453  O2A     T6F   1  
T6F  PA      PA      P  0  1  N  N  R  15.850  -17.675   4.438   -5.661  -1.871  -0.394  PA      T6F   2  
T6F  O1A     O1A     O  0  1  N  N  N  15.915  -17.976   2.981   -6.059  -0.630  -1.095  O1A     T6F   3  
T6F  O3A     O3A     O  0  1  N  N  N  15.431  -18.952   5.324   -6.954  -2.536   0.297  O3A     T6F   4  
T6F  PB      PB      P  0  1  N  N  N  15.716  -20.531   5.172   -8.462  -2.820  -0.191  PB      T6F   5  
T6F  O3B     O3B     O  0  1  N  N  N  16.995  -20.682   5.969   -9.290  -1.439  -0.203  O3B     T6F   6  
T6F  O2B     O2B     O  0  1  N  N  N  15.830  -20.917   3.718   -8.439  -3.394  -1.555  O2B     T6F   7  
T6F  O1B     O1B     O  0  1  N  N  N  14.587  -21.229   5.873   -9.165  -3.859   0.817  O1B     T6F   8  
T6F  O7      O7      O  0  1  N  N  N  14.483  -16.834   4.487   -4.568  -1.523   0.735  O7      T6F   9  
T6F  C7      C7      C  0  1  N  N  N  13.562  -16.849   5.563   -3.351  -0.828   0.453  C7      T6F  10  
T6F  C6      C6      C  0  1  N  N  N  13.314  -15.392   5.865   -2.547  -0.663   1.744  C6      T6F  11  
T6F  C5      C5      C  0  1  Y  N  N  12.882  -15.229   7.298   -1.264   0.070   1.447  C5      T6F  12  
T6F  S1      S1      S  0  1  Y  N  N  13.503  -16.080   8.758    0.268  -0.668   0.987  S1      T6F  13  
T6F  C2      C2      C  0  1  Y  N  N  12.570  -15.049   9.947    0.994   0.877   0.892  C2      T6F  14  
T6F  CF2     CF2     C  0  1  N  N  S  12.039  -15.477  11.310    2.431   1.134   0.521  CF2     T6F  15  
T6F  OF2     OF2     O  0  1  N  N  N  11.812  -14.327  12.132    3.049   1.931   1.533  OF2     T6F  16  
T6F  CF1     CF1     C  0  1  N  N  N  13.127  -16.293  12.022    2.489   1.874  -0.817  CF1     T6F  17  
T6F  OF1     OF1     O  0  1  N  N  N  14.227  -15.483  12.506    1.821   1.103  -1.817  OF1     T6F  18  
T6F  CF3     CF3     C  0  1  N  N  S  10.697  -16.230  11.132    3.172  -0.199   0.398  CF3     T6F  19  
T6F  OF3     OF3     O  0  1  N  N  N  10.899  -17.569  10.644    2.632  -0.946  -0.694  OF3     T6F  20  
T6F  CF4     CF4     C  0  1  N  N  R   9.765  -16.311  12.361    4.659   0.064   0.150  CF4     T6F  21  
T6F  OF4     OF4     O  0  1  N  N  N  10.325  -17.175  13.364    4.824   0.701  -1.119  OF4     T6F  22  
T6F  CF5     CF5     C  0  1  N  N  R   8.376  -16.861  12.000    5.420  -1.262   0.158  CF5     T6F  23  
T6F  OF5     OF5     O  0  1  N  N  N   7.756  -16.119  10.936    5.255  -1.899   1.427  OF5     T6F  24  
T6F  CF6     CF6     C  0  1  N  N  N   7.413  -16.880  13.188    6.907  -0.999  -0.090  CF6     T6F  25  
T6F  OF6     OF6     O  0  1  N  N  N   6.159  -17.405  12.743    7.600  -2.244  -0.198  OF6     T6F  26  
T6F  PF      PF      P  0  1  N  N  N   4.809  -17.264  13.621    9.185  -2.345  -0.461  PF      T6F  27  
T6F  OF8     OF8     O  0  1  N  N  N   3.748  -16.832  12.627    9.533  -1.584  -1.682  OF8     T6F  28  
T6F  OF7     OF7     O  0  1  N  N  N   5.165  -16.247  14.686    9.978  -1.731   0.798  OF7     T6F  29  
T6F  OF9     OF9     O  0  1  N  N  N   4.574  -18.665  14.159    9.599  -3.889  -0.655  OF9     T6F  30  
T6F  N3      N3      N  1  1  Y  N  N  12.251  -14.034   9.111    0.131   1.792   1.183  N3      T6F  31  
T6F  C4      C4      C  0  1  Y  N  N  12.240  -14.095   7.764   -1.090   1.394   1.479  C4      T6F  32  
T6F  CM4     CM4     C  0  1  N  N  N  11.473  -13.247   6.767   -2.197   2.354   1.830  CM4     T6F  33  
T6F  "C7,"   "C7,"   C  0  1  N  N  N  11.808  -12.773   9.686    0.492   3.212   1.178  "C7,"   T6F  34  
T6F  "C5,"   "C5,"   C  0  1  Y  N  N  12.875  -11.687   9.655   -0.378   3.948   0.193  "C5,"   T6F  35  
T6F  "C4,"   "C4,"   C  0  1  Y  N  N  14.086  -11.737  10.369   -1.365   4.833   0.632  "C4,"   T6F  36  
T6F  "N4,"   "N4,"   N  0  1  N  N  N  14.446  -12.782  11.172   -1.563   5.051   1.985  "N4,"   T6F  37  
T6F  "N3,"   "N3,"   N  0  1  Y  N  N  14.959  -10.700  10.257   -2.112   5.463  -0.271  "N3,"   T6F  38  
T6F  "C2,"   "C2,"   C  0  1  Y  N  N  14.657   -9.625   9.497   -1.926   5.258  -1.559  "C2,"   T6F  39  
T6F  CM2     CM2     C  0  1  N  N  N  15.613   -8.471   9.406   -2.793   5.992  -2.549  CM2     T6F  40  
T6F  "N1,"   "N1,"   N  0  1  Y  N  N  13.486   -9.561   8.819   -1.003   4.430  -2.005  "N1,"   T6F  41  
T6F  "C6,"   "C6,"   C  0  1  Y  N  N  12.602  -10.569   8.871   -0.217   3.769  -1.167  "C6,"   T6F  42  
T6F  HO2A    HO2A    H  0  0  N  N  N  17.666  -16.785   4.533   -4.743  -3.743  -1.063  HO2A    T6F  43  
T6F  HO3B    HO3B    H  0  0  N  N  N  17.736  -20.714   5.376   -9.346  -1.007   0.660  HO3B    T6F  44  
T6F  HO1B    HO1B    H  0  0  N  N  N  14.821  -21.376   6.782  -10.078  -4.077   0.584  HO1B    T6F  45  
T6F  H71     1H7     H  0  1  N  N  N  12.630  -17.361   5.282   -2.767  -1.398  -0.269  H71     T6F  46  
T6F  H72     2H7     H  0  1  N  N  N  13.949  -17.396   6.436   -3.581   0.154   0.040  H72     T6F  47  
T6F  H61     1H6     H  0  1  N  N  N  14.241  -14.823   5.698   -3.132  -0.093   2.466  H61     T6F  48  
T6F  H62     2H6     H  0  1  N  N  N  12.520  -15.016   5.203   -2.317  -1.645   2.157  H62     T6F  49  
T6F  HOF2    HOF2    H  0  0  N  N  N  11.762  -14.593  13.043    3.049   1.523   2.410  HOF2    T6F  50  
T6F  HF11    1HF1    H  0  0  N  N  N  12.668  -16.800  12.884    1.999   2.843  -0.717  HF11    T6F  51  
T6F  HF12    2HF1    H  0  0  N  N  N  13.539  -17.001  11.288    3.529   2.022  -1.106  HF12    T6F  52  
T6F  HOF1    HOF1    H  0  0  N  N  N  14.828  -15.306  11.792    1.818   1.512  -2.693  HOF1    T6F  53  
T6F  HF3     HF3     H  0  1  N  N  N  10.180  -15.593  10.399    3.053  -0.767   1.321  HF3     T6F  54  
T6F  HOF3    HOF3    H  0  0  N  N  N  10.944  -17.557   9.695    2.823  -0.566  -1.562  HOF3    T6F  55  
T6F  HF4     HF4     H  0  1  N  N  N   9.664  -15.283  12.738    5.049   0.712   0.935  HF4     T6F  56  
T6F  HOF4    HOF4    H  0  0  N  N  N  10.449  -18.044  13.001    4.498   0.180  -1.865  HOF4    T6F  57  
T6F  HF5     HF5     H  0  1  N  N  N   8.565  -17.895  11.674    5.030  -1.910  -0.627  HF5     T6F  58  
T6F  HOF5    HOF5    H  0  0  N  N  N   7.619  -15.221  11.214    5.581  -1.378   2.174  HOF5    T6F  59  
T6F  HF61    1HF6    H  0  0  N  N  N   7.820  -17.515  13.989    7.026  -0.435  -1.015  HF61    T6F  60  
T6F  HF62    2HF6    H  0  0  N  N  N   7.278  -15.862  13.581    7.318  -0.425   0.741  HF62    T6F  61  
T6F  HOF7    HOF7    H  0  0  N  N  N   5.240  -16.682  15.527    9.798  -2.182   1.635  HOF7    T6F  62  
T6F  HOF9    HOF9    H  0  0  N  N  N   4.525  -19.279  13.435   10.543  -4.025  -0.818  HOF9    T6F  63  
T6F  HM41    1HM4    H  0  0  N  N  N  11.287  -12.252   7.197   -2.111   2.640   2.879  HM41    T6F  64  
T6F  HM42    2HM4    H  0  0  N  N  N  12.063  -13.143   5.844   -2.120   3.243   1.204  HM42    T6F  65  
T6F  HM43    3HM4    H  0  0  N  N  N  10.513  -13.731   6.536   -3.161   1.874   1.663  HM43    T6F  66  
T6F  "H7,1"  "1H7,"  H  0  0  N  N  N  10.941  -12.419   9.110    0.345   3.628   2.174  "H7,1"  T6F  67  
T6F  "H7,2"  "2H7,"  H  0  0  N  N  N  11.565  -12.962  10.742    1.538   3.320   0.890  "H7,2"  T6F  68  
T6F  "H4,1"  "1H4,"  H  0  0  N  N  N  14.534  -13.612  10.621   -0.929   4.701   2.631  "H4,1"  T6F  69  
T6F  "H4,2"  "2H4,"  H  0  0  N  N  N  15.321  -12.579  11.611   -2.335   5.555   2.288  "H4,2"  T6F  70  
T6F  HM21    1HM2    H  0  0  N  N  N  15.847   -8.107  10.417   -2.322   6.939  -2.813  HM21    T6F  71  
T6F  HM22    2HM2    H  0  0  N  N  N  16.539   -8.800   8.912   -2.914   5.384  -3.446  HM22    T6F  72  
T6F  HM23    3HM2    H  0  0  N  N  N  15.154   -7.660   8.822   -3.770   6.183  -2.106  HM23    T6F  73  
T6F  "H6,"   "H6,"   H  0  1  N  N  N  11.683  -10.514   8.307    0.537   3.093  -1.544  "H6,"   T6F  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T6F  O1A    PA      DOUB  N  N   1  
T6F  O2B    PB      DOUB  N  N   2  
T6F  PA     O7      SING  N  N   3  
T6F  PA     O2A     SING  N  N   4  
T6F  PA     O3A     SING  N  N   5  
T6F  O7     C7      SING  N  N   6  
T6F  PB     O3A     SING  N  N   7  
T6F  PB     O1B     SING  N  N   8  
T6F  PB     O3B     SING  N  N   9  
T6F  C7     C6      SING  N  N  10  
T6F  C6     C5      SING  N  N  11  
T6F  CM4    C4      SING  N  N  12  
T6F  C5     C4      DOUB  Y  N  13  
T6F  C5     S1      SING  Y  N  14  
T6F  C4     N3      SING  Y  N  15  
T6F  S1     C2      SING  Y  N  16  
T6F  "N1,"  "C6,"   DOUB  Y  N  17  
T6F  "N1,"  "C2,"   SING  Y  N  18  
T6F  "C6,"  "C5,"   SING  Y  N  19  
T6F  N3     "C7,"   SING  N  N  20  
T6F  N3     C2      DOUB  Y  N  21  
T6F  CM2    "C2,"   SING  N  N  22  
T6F  "C2,"  "N3,"   DOUB  Y  N  23  
T6F  "C5,"  "C7,"   SING  N  N  24  
T6F  "C5,"  "C4,"   DOUB  Y  N  25  
T6F  C2     CF2     SING  N  N  26  
T6F  "N3,"  "C4,"   SING  Y  N  27  
T6F  "C4,"  "N4,"   SING  N  N  28  
T6F  OF3    CF3     SING  N  N  29  
T6F  OF5    CF5     SING  N  N  30  
T6F  CF3    CF2     SING  N  N  31  
T6F  CF3    CF4     SING  N  N  32  
T6F  CF2    CF1     SING  N  N  33  
T6F  CF2    OF2     SING  N  N  34  
T6F  CF5    CF4     SING  N  N  35  
T6F  CF5    CF6     SING  N  N  36  
T6F  CF1    OF1     SING  N  N  37  
T6F  CF4    OF4     SING  N  N  38  
T6F  OF8    PF      DOUB  N  N  39  
T6F  OF6    CF6     SING  N  N  40  
T6F  OF6    PF      SING  N  N  41  
T6F  PF     OF9     SING  N  N  42  
T6F  PF     OF7     SING  N  N  43  
T6F  O2A    HO2A    SING  N  N  44  
T6F  O3B    HO3B    SING  N  N  45  
T6F  O1B    HO1B    SING  N  N  46  
T6F  C7     H71     SING  N  N  47  
T6F  C7     H72     SING  N  N  48  
T6F  C6     H61     SING  N  N  49  
T6F  C6     H62     SING  N  N  50  
T6F  OF2    HOF2    SING  N  N  51  
T6F  CF1    HF11    SING  N  N  52  
T6F  CF1    HF12    SING  N  N  53  
T6F  OF1    HOF1    SING  N  N  54  
T6F  CF3    HF3     SING  N  N  55  
T6F  OF3    HOF3    SING  N  N  56  
T6F  CF4    HF4     SING  N  N  57  
T6F  OF4    HOF4    SING  N  N  58  
T6F  CF5    HF5     SING  N  N  59  
T6F  OF5    HOF5    SING  N  N  60  
T6F  CF6    HF61    SING  N  N  61  
T6F  CF6    HF62    SING  N  N  62  
T6F  OF7    HOF7    SING  N  N  63  
T6F  OF9    HOF9    SING  N  N  64  
T6F  CM4    HM41    SING  N  N  65  
T6F  CM4    HM42    SING  N  N  66  
T6F  CM4    HM43    SING  N  N  67  
T6F  "C7,"  "H7,1"  SING  N  N  68  
T6F  "C7,"  "H7,2"  SING  N  N  69  
T6F  "N4,"  "H4,1"  SING  N  N  70  
T6F  "N4,"  "H4,2"  SING  N  N  71  
T6F  CM2    HM21    SING  N  N  72  
T6F  CM2    HM22    SING  N  N  73  
T6F  CM2    HM23    SING  N  N  74  
T6F  "C6,"  "H6,"   SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T6F  SMILES            ACDLabs               10.04  "O=P(O)(O)OCC(O)C(O)C(O)C(O)(c1sc(c([n+]1Cc2cnc(nc2N)C)C)CCOP(=O)(O)OP(=O)(O)O)CO"  
T6F  SMILES_CANONICAL  CACTVS                3.341  "Cc1ncc(C[n+]2c(C)c(CCO[P@](O)(=O)O[P](O)(O)=O)sc2[C@](O)(CO)[C@@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c(N)n1"  
T6F  SMILES            CACTVS                3.341  "Cc1ncc(C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[C](O)(CO)[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c(N)n1"  
T6F  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1c(sc([n+]1Cc2cnc(nc2N)C)[C@](CO)([C@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)O)CCO[P@@](=O)(O)OP(=O)(O)O"  
T6F  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(CO)(C(C(C(COP(=O)(O)O)O)O)O)O)CCOP(=O)(O)OP(=O)(O)O"  
T6F  InChI             InChI                 1.03   "InChI=1S/C18H31N4O16P3S/c1-9-13(3-4-36-41(34,35)38-40(31,32)33)42-17(22(9)6-11-5-20-10(2)21-16(11)19)18(27,8-23)15(26)14(25)12(24)7-37-39(28,29)30/h5,12,14-15,23-27H,3-4,6-8H2,1-2H3,(H6-,19,20,21,28,29,30,31,32,33,34,35)/p+1/t12-,14-,15+,18+/m1/s1"  
T6F  InChIKey          InChI                 1.03   AJFWOWNNZFXSES-TXPWEPMLSA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T6F  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-C-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium-2-yl}-6-O-phosphono-D-glucitol"  
T6F  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-[(2S,3S,4R,5R)-1,2,3,4,5-pentahydroxy-6-phosphonooxy-hexan-2-yl]-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T6F  "Create component"      2007-10-26  RCSB  
T6F  "Modify aromatic_flag"  2011-06-04  RCSB  
T6F  "Modify descriptor"     2011-06-04  RCSB  
T6F  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     T6F
_pdbx_chem_comp_synonyms.name        "D-FRUCTOSE-6-PHOSPHATE THIAMIN DIPHOSPHATE ADDUCT"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
