data_VHF
# 
_chem_comp.id                                    VHF 
_chem_comp.name                                  "(2~{S})-2-azanyl-5-oxidanylidene-5-phosphonooxy-pentanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C5 H10 N O7 P" 
_chem_comp.mon_nstd_parent_comp_id               GLU 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-06 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        227.109 
_chem_comp.one_letter_code                       E 
_chem_comp.three_letter_code                     VHF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7OY3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VHF PA  PA  P 0 1 N N N N N N 110.735 114.059 -3.318 3.211  -0.018 0.042  PA  VHF 1  
VHF OA1 OA1 O 0 1 N N N N N N 111.168 114.932 -4.462 3.172  -0.025 1.521  OA1 VHF 2  
VHF OA2 OA2 O 0 1 N N N N N N 111.726 113.598 -2.275 4.482  0.835  -0.457 OA2 VHF 3  
VHF OA3 OA3 O 0 1 N N N N N N 109.721 113.005 -3.725 3.332  -1.529 -0.500 OA3 VHF 4  
VHF OE2 OE2 O 0 1 N N N N N N 109.728 115.272 -2.309 1.860  0.649  -0.527 OE2 VHF 5  
VHF CD  CD  C 0 1 N N N N N N 108.508 115.588 -2.542 0.698  0.117  -0.117 CD  VHF 6  
VHF OE1 OE1 O 0 1 N N N N N N 107.943 115.277 -3.593 0.699  -0.820 0.646  OE1 VHF 7  
VHF CG  CG  C 0 1 N N N N N N 107.729 116.311 -1.457 -0.607 0.689  -0.607 CG  VHF 8  
VHF CB  CB  C 0 1 N N N N N N 106.967 115.250 -0.631 -1.770 -0.094 0.007  CB  VHF 9  
VHF CA  CA  C 0 1 N N S Y N N 105.889 115.878 0.242  -3.095 0.487  -0.491 CA  VHF 10 
VHF C   C   C 0 1 N N N Y N Y 105.001 114.790 0.942  -4.235 -0.359 0.016  C   VHF 11 
VHF O   O   O 0 1 N N N Y N Y 105.131 113.601 0.579  -4.871 -0.001 0.979  O   VHF 12 
VHF OXT OXT O 0 1 N Y N Y N Y 104.187 115.205 1.810  -4.544 -1.508 -0.604 OXT VHF 13 
VHF N   N   N 0 1 N N N Y Y N 106.528 116.735 1.244  -3.245 1.861  0.007  N   VHF 14 
VHF HA2 HA2 H 0 1 N N N N N N 112.587 113.944 -2.480 5.332  0.490  -0.151 HA2 VHF 15 
VHF HA3 HA3 H 0 1 N N N N N N 109.535 113.086 -4.653 3.363  -1.600 -1.464 HA3 VHF 16 
VHF HG2 HG2 H 0 1 N N N N N N 108.421 116.865 -0.806 -0.678 1.736  -0.313 HG2 VHF 17 
VHF HG3 HG3 H 0 1 N N N N N N 107.015 117.012 -1.914 -0.652 0.613  -1.693 HG3 VHF 18 
VHF HB2 HB2 H 0 1 N N N N N N 106.495 114.534 -1.320 -1.698 -1.141 -0.287 HB2 VHF 19 
VHF HB3 HB3 H 0 1 N N N N N N 107.683 114.720 0.014  -1.725 -0.017 1.094  HB3 VHF 20 
VHF HA  HA  H 0 1 N N N Y N N 105.235 116.490 -0.396 -3.102 0.492  -1.581 HA  VHF 21 
VHF HXT HXT H 0 1 N Y N Y N Y 103.684 114.474 2.149  -5.284 -2.016 -0.243 HXT VHF 22 
VHF H2  H   H 0 1 N Y N Y Y N 105.827 117.152 1.822  -4.082 2.289  -0.360 H   VHF 23 
VHF H   H2  H 0 1 N N N Y Y N 107.143 116.185 1.809  -3.241 1.883  1.016  H2  VHF 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VHF OA1 PA  DOUB N N 1  
VHF OA3 PA  SING N N 2  
VHF OE1 CD  DOUB N N 3  
VHF PA  OE2 SING N N 4  
VHF PA  OA2 SING N N 5  
VHF CD  OE2 SING N N 6  
VHF CD  CG  SING N N 7  
VHF CG  CB  SING N N 8  
VHF CB  CA  SING N N 9  
VHF CA  C   SING N N 10 
VHF CA  N   SING N N 11 
VHF O   C   DOUB N N 12 
VHF C   OXT SING N N 13 
VHF OA2 HA2 SING N N 14 
VHF OA3 HA3 SING N N 15 
VHF CG  HG2 SING N N 16 
VHF CG  HG3 SING N N 17 
VHF CB  HB2 SING N N 18 
VHF CB  HB3 SING N N 19 
VHF CA  HA  SING N N 20 
VHF OXT HXT SING N N 21 
VHF N   H2  SING N N 22 
VHF N   H   SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VHF InChI            InChI                1.06  "InChI=1S/C5H10NO7P/c6-3(5(8)9)1-2-4(7)13-14(10,11)12/h3H,1-2,6H2,(H,8,9)(H2,10,11,12)/t3-/m0/s1" 
VHF InChIKey         InChI                1.06  PJRXVIJAERNUIP-VKHMYHEASA-N                                                                       
VHF SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCC(=O)O[P](O)(O)=O)C(O)=O"                                                              
VHF SMILES           CACTVS               3.385 "N[CH](CCC(=O)O[P](O)(O)=O)C(O)=O"                                                                
VHF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)OP(=O)(O)O)[C@@H](C(=O)O)N"                                                              
VHF SMILES           "OpenEye OEToolkits" 2.0.7 "C(CC(=O)OP(=O)(O)O)C(C(=O)O)N"                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           VHF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-5-oxidanylidene-5-phosphonooxy-pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VHF "Create component" 2023-03-06 PDBE 
VHF "Modify atom id"   2023-03-06 PDBE 
VHF "Initial release"  2023-03-15 RCSB 
VHF "Modify backbone"  2023-11-03 PDBE 
VHF "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 VHF GLU Phosphorylation "Named protein modification"     "Amino-acid side chain" "Any position" ?  ?  ? ? 
2 VHF CYS None            "Covalent chemical modification" "Amino-acid side chain" "Any position" CD SG ? ? 
# 
