data_VTF
# 
_chem_comp.id                                    VTF 
_chem_comp.name                                  "~{N}-[4-[4-(4-cyano-6-methyl-pyrimidin-2-yl)piperazin-1-yl]sulfonylphenyl]-2-[methyl(methylsulfonyl)amino]benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H27 N7 O5 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-18 
_chem_comp.pdbx_modified_date                    2024-04-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        569.656 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VTF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QK2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VTF C5  C1  C 0 1 Y N N N N N 5.648  7.765  5.539  8.911  -1.555 0.397  C5  VTF 1  
VTF C6  C2  C 0 1 Y N N N N N 4.800  6.817  5.007  9.528  -0.425 0.910  C6  VTF 2  
VTF N7  N1  N 0 1 N N N N N N 3.991  10.816 4.593  5.506  -0.521 0.307  N7  VTF 3  
VTF C8  C3  C 0 1 N N N N N N 5.144  11.675 4.669  4.879  0.749  0.698  C8  VTF 4  
VTF C9  C4  C 0 1 N N N N N N 4.648  13.009 5.218  3.355  0.607  0.627  C9  VTF 5  
VTF C10 C5  C 0 1 N N N N N N 3.115  11.221 3.531  5.193  -0.863 -1.087 C10 VTF 6  
VTF C11 C6  C 0 1 N N N N N N 2.505  12.580 3.960  3.681  -1.071 -1.231 C11 VTF 7  
VTF C1  C7  C 0 1 Y N N N N N 3.654  7.244  4.329  8.735  0.685  1.216  C1  VTF 8  
VTF N2  N2  N 0 1 Y N N N N N 3.412  8.555  4.178  7.422  0.616  1.005  N2  VTF 9  
VTF C3  C8  C 0 1 Y N N N N N 4.307  9.460  4.623  6.874  -0.483 0.514  C3  VTF 10 
VTF N4  N3  N 0 1 Y N N N N N 5.375  9.068  5.353  7.602  -1.548 0.209  N4  VTF 11 
VTF N12 N4  N 0 1 N N N N N N 3.620  13.573 4.300  2.994  0.121  -0.714 N12 VTF 12 
VTF S13 S1  S 0 1 N N N N N N 3.010  15.001 4.905  1.842  0.897  -1.616 S13 VTF 13 
VTF C14 C9  C 0 1 Y N N N N N 2.027  14.704 6.340  0.289  0.162  -1.224 C14 VTF 14 
VTF O15 O1  O 0 1 N N N N N N 4.124  15.871 5.211  1.787  2.233  -1.134 O15 VTF 15 
VTF O16 O2  O 0 1 N N N N N N 2.205  15.571 3.901  2.109  0.571  -2.973 O16 VTF 16 
VTF C17 C10 C 0 1 Y N N N N N 0.721  14.336 6.172  -0.161 -0.927 -1.949 C17 VTF 17 
VTF C18 C11 C 0 1 Y N N N N N -0.074 14.063 7.257  -1.378 -1.505 -1.644 C18 VTF 18 
VTF C19 C12 C 0 1 Y N N N N N 0.403  14.183 8.552  -2.148 -0.993 -0.608 C19 VTF 19 
VTF C20 C13 C 0 1 Y N N N N N 2.560  14.831 7.656  -0.473 0.670  -0.189 C20 VTF 20 
VTF C21 C14 C 0 1 Y N N N N N 1.735  14.556 8.771  -1.692 0.100  0.118  C21 VTF 21 
VTF N22 N5  N 0 1 N N N N N N -0.467 13.828 9.601  -3.381 -1.577 -0.297 N22 VTF 22 
VTF C23 C15 C 0 1 N N N N N N -0.300 14.148 10.921 -4.393 -0.811 0.156  C23 VTF 23 
VTF O24 O3  O 0 1 N N N N N N 0.649  14.825 11.305 -4.268 0.398  0.203  O24 VTF 24 
VTF C25 C16 C 0 1 Y N N N N N -1.358 13.669 11.901 -5.653 -1.439 0.594  C25 VTF 25 
VTF C26 C17 C 0 1 Y N N N N N -1.817 12.354 11.821 -5.800 -2.828 0.547  C26 VTF 26 
VTF C27 C18 C 0 1 Y N N N N N -2.800 11.905 12.686 -6.980 -3.408 0.958  C27 VTF 27 
VTF C28 C19 C 0 1 Y N N N N N -3.365 12.775 13.611 -8.024 -2.623 1.419  C28 VTF 28 
VTF C29 C20 C 0 1 Y N N N N N -2.932 14.095 13.689 -7.895 -1.250 1.471  C29 VTF 29 
VTF C30 C21 C 0 1 Y N N N N N -1.949 14.558 12.817 -6.711 -0.646 1.066  C30 VTF 30 
VTF N31 N6  N 0 1 N N N N N N -1.456 15.929 12.928 -6.576 0.735  1.123  N31 VTF 31 
VTF C32 C22 C 0 1 N N N N N N -1.606 16.435 14.311 -6.153 1.379  2.368  C32 VTF 32 
VTF S33 S2  S 0 1 N N N N N N -2.206 16.910 11.871 -6.895 1.654  -0.218 S33 VTF 33 
VTF C34 C23 C 0 1 N N N N N N -3.874 17.222 12.424 -8.661 2.048  -0.087 C34 VTF 34 
VTF O35 O4  O 0 1 N N N N N N -1.482 18.143 11.779 -6.109 2.823  -0.036 O35 VTF 35 
VTF O36 O5  O 0 1 N N N N N N -2.231 16.302 10.604 -6.660 0.775  -1.309 O36 VTF 36 
VTF C37 C24 C 0 1 N N N N N N 6.902  7.359  6.311  9.724  -2.776 0.051  C37 VTF 37 
VTF C38 C25 C 0 1 N N N N N N 2.753  6.302  3.773  9.325  1.876  1.748  C38 VTF 38 
VTF N39 N7  N 0 1 N N N N N N 2.019  5.573  3.319  9.793  2.821  2.170  N39 VTF 39 
VTF H1  H1  H 0 1 N N N N N N 5.017  5.764  5.112  10.595 -0.402 1.069  H1  VTF 40 
VTF H2  H2  H 0 1 N N N N N N 5.898  11.242 5.343  5.174  1.002  1.717  H2  VTF 41 
VTF H3  H3  H 0 1 N N N N N N 5.582  11.814 3.670  5.203  1.538  0.019  H3  VTF 42 
VTF H4  H4  H 0 1 N N N N N N 5.492  13.709 5.297  3.019  -0.108 1.378  H4  VTF 43 
VTF H5  H5  H 0 1 N N N N N N 4.205  12.854 6.213  2.888  1.575  0.807  H5  VTF 44 
VTF H6  H6  H 0 1 N N N N N N 2.319  10.475 3.389  5.512  -0.051 -1.741 H6  VTF 45 
VTF H7  H7  H 0 1 N N N N N N 3.681  11.337 2.595  5.714  -1.779 -1.362 H7  VTF 46 
VTF H8  H8  H 0 1 N N N N N N 1.898  12.983 3.136  3.430  -1.212 -2.282 H8  VTF 47 
VTF H9  H9  H 0 1 N N N N N N 1.869  12.430 4.845  3.376  -1.947 -0.658 H9  VTF 48 
VTF H10 H10 H 0 1 N N N N N N 0.311  14.259 5.176  0.439  -1.324 -2.754 H10 VTF 49 
VTF H11 H11 H 0 1 N N N N N N -1.095 13.747 7.098  -1.729 -2.355 -2.210 H11 VTF 50 
VTF H12 H12 H 0 1 N N N N N N 3.586  15.135 7.800  -0.116 1.518  0.378  H12 VTF 51 
VTF H13 H13 H 0 1 N N N N N N 2.126  14.632 9.775  -2.289 0.500  0.924  H13 VTF 52 
VTF H14 H14 H 0 1 N N N N N N -1.278 13.295 9.360  -3.507 -2.532 -0.407 H14 VTF 53 
VTF H15 H15 H 0 1 N N N N N N -1.404 11.684 11.082 -4.989 -3.445 0.189  H15 VTF 54 
VTF H16 H16 H 0 1 N N N N N N -3.128 10.877 12.642 -7.091 -4.482 0.921  H16 VTF 55 
VTF H17 H17 H 0 1 N N N N N N -4.144 12.425 14.272 -8.945 -3.087 1.739  H17 VTF 56 
VTF H18 H18 H 0 1 N N N N N N -3.358 14.761 14.425 -8.713 -0.644 1.831  H18 VTF 57 
VTF H19 H19 H 0 1 N N N N N N -1.092 15.757 15.008 -5.066 1.456  2.387  H19 VTF 58 
VTF H20 H20 H 0 1 N N N N N N -1.164 17.440 14.384 -6.588 2.377  2.428  H20 VTF 59 
VTF H21 H21 H 0 1 N N N N N N -2.674 16.485 14.569 -6.490 0.785  3.218  H21 VTF 60 
VTF H22 H22 H 0 1 N N N N N N -3.849 17.698 13.416 -8.843 2.598  0.836  H22 VTF 61 
VTF H23 H23 H 0 1 N N N N N N -4.378 17.890 11.710 -8.961 2.658  -0.939 H23 VTF 62 
VTF H24 H24 H 0 1 N N N N N N -4.423 16.271 12.487 -9.240 1.124  -0.080 H24 VTF 63 
VTF H25 H25 H 0 1 N N N N N N 7.445  8.261  6.630  9.786  -3.429 0.921  H25 VTF 64 
VTF H26 H26 H 0 1 N N N N N N 6.614  6.773  7.196  9.247  -3.309 -0.771 H26 VTF 65 
VTF H27 H27 H 0 1 N N N N N N 7.550  6.750  5.663  10.727 -2.471 -0.247 H27 VTF 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VTF N39 C38 TRIP N N 1  
VTF C10 C11 SING N N 2  
VTF C10 N7  SING N N 3  
VTF C38 C1  SING N N 4  
VTF O16 S13 DOUB N N 5  
VTF C11 N12 SING N N 6  
VTF N2  C1  DOUB Y N 7  
VTF N2  C3  SING Y N 8  
VTF N12 S13 SING N N 9  
VTF N12 C9  SING N N 10 
VTF C1  C6  SING Y N 11 
VTF N7  C3  SING N N 12 
VTF N7  C8  SING N N 13 
VTF C3  N4  DOUB Y N 14 
VTF C8  C9  SING N N 15 
VTF S13 O15 DOUB N N 16 
VTF S13 C14 SING N N 17 
VTF C6  C5  DOUB Y N 18 
VTF N4  C5  SING Y N 19 
VTF C5  C37 SING N N 20 
VTF C17 C14 DOUB Y N 21 
VTF C17 C18 SING Y N 22 
VTF C14 C20 SING Y N 23 
VTF C18 C19 DOUB Y N 24 
VTF C20 C21 DOUB Y N 25 
VTF C19 C21 SING Y N 26 
VTF C19 N22 SING N N 27 
VTF N22 C23 SING N N 28 
VTF O36 S33 DOUB N N 29 
VTF C23 O24 DOUB N N 30 
VTF C23 C25 SING N N 31 
VTF O35 S33 DOUB N N 32 
VTF C26 C25 DOUB Y N 33 
VTF C26 C27 SING Y N 34 
VTF S33 C34 SING N N 35 
VTF S33 N31 SING N N 36 
VTF C25 C30 SING Y N 37 
VTF C27 C28 DOUB Y N 38 
VTF C30 N31 SING N N 39 
VTF C30 C29 DOUB Y N 40 
VTF N31 C32 SING N N 41 
VTF C28 C29 SING Y N 42 
VTF C6  H1  SING N N 43 
VTF C8  H2  SING N N 44 
VTF C8  H3  SING N N 45 
VTF C9  H4  SING N N 46 
VTF C9  H5  SING N N 47 
VTF C10 H6  SING N N 48 
VTF C10 H7  SING N N 49 
VTF C11 H8  SING N N 50 
VTF C11 H9  SING N N 51 
VTF C17 H10 SING N N 52 
VTF C18 H11 SING N N 53 
VTF C20 H12 SING N N 54 
VTF C21 H13 SING N N 55 
VTF N22 H14 SING N N 56 
VTF C26 H15 SING N N 57 
VTF C27 H16 SING N N 58 
VTF C28 H17 SING N N 59 
VTF C29 H18 SING N N 60 
VTF C32 H19 SING N N 61 
VTF C32 H20 SING N N 62 
VTF C32 H21 SING N N 63 
VTF C34 H22 SING N N 64 
VTF C34 H23 SING N N 65 
VTF C34 H24 SING N N 66 
VTF C37 H25 SING N N 67 
VTF C37 H26 SING N N 68 
VTF C37 H27 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VTF InChI            InChI                1.06  "InChI=1S/C25H27N7O5S2/c1-18-16-20(17-26)29-25(27-18)31-12-14-32(15-13-31)39(36,37)21-10-8-19(9-11-21)28-24(33)22-6-4-5-7-23(22)30(2)38(3,34)35/h4-11,16H,12-15H2,1-3H3,(H,28,33)" 
VTF InChIKey         InChI                1.06  GYNDUARBATVDGK-UHFFFAOYSA-N                                                                                                                                                        
VTF SMILES_CANONICAL CACTVS               3.385 "CN(c1ccccc1C(=O)Nc2ccc(cc2)[S](=O)(=O)N3CCN(CC3)c4nc(C)cc(n4)C#N)[S](C)(=O)=O"                                                                                                    
VTF SMILES           CACTVS               3.385 "CN(c1ccccc1C(=O)Nc2ccc(cc2)[S](=O)(=O)N3CCN(CC3)c4nc(C)cc(n4)C#N)[S](C)(=O)=O"                                                                                                    
VTF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCN(CC2)S(=O)(=O)c3ccc(cc3)NC(=O)c4ccccc4N(C)S(=O)(=O)C)C#N"                                                                                                        
VTF SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCN(CC2)S(=O)(=O)c3ccc(cc3)NC(=O)c4ccccc4N(C)S(=O)(=O)C)C#N"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           VTF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[4-[4-(4-cyano-6-methyl-pyrimidin-2-yl)piperazin-1-yl]sulfonylphenyl]-2-[methyl(methylsulfonyl)amino]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VTF "Create component" 2023-09-18 PDBE 
VTF "Initial release"  2024-04-17 RCSB 
# 
