data_XEF
# 
_chem_comp.id                                    XEF 
_chem_comp.name                                  Ziprasidone 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H21 Cl N4 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "5-[2-[4-(1,2-benzothiazol-3-yl)piperazin-1-yl]ethyl]-6-chloranyl-1,3-dihydroindol-2-one" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-31 
_chem_comp.pdbx_modified_date                    2024-11-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        412.936 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XEF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WTY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XEF C14  C1  C  0 1 Y N N N N N 105.065 108.910 108.757 4.398  -0.413 0.407  C14  XEF 1  
XEF C13  C2  C  0 1 N N N N N N 101.628 113.991 109.651 -1.899 -0.276 -0.802 C13  XEF 2  
XEF C15  C3  C  0 1 Y N N N N N 100.419 114.679 108.934 -3.376 -0.156 -0.524 C15  XEF 3  
XEF C12  C4  C  0 1 N N N N N N 102.710 113.644 108.621 -1.171 -0.695 0.477  C12  XEF 4  
XEF C11  C5  C  0 1 N N N N N N 103.952 110.713 110.213 2.330  0.323  -0.466 C11  XEF 5  
XEF C08  C6  C  0 1 N N N N N N 104.480 112.512 108.148 0.968  -1.437 1.336  C08  XEF 6  
XEF C09  C7  C  0 1 N N N N N N 102.962 111.760 109.701 0.852  0.498  -0.112 C09  XEF 7  
XEF C10  C8  C  0 1 N N N N N N 105.511 111.457 108.575 2.447  -1.613 0.983  C10  XEF 8  
XEF C16  C9  C  0 1 Y N N N N N 105.105 107.657 109.751 5.198  0.754  0.067  C16  XEF 9  
XEF C17  C10 C  0 1 Y N N N N N 97.894  114.610 108.046 -5.291 1.193  -0.051 C17  XEF 10 
XEF C18  C11 C  0 1 Y N N N N N 99.099  113.920 108.762 -3.942 1.088  -0.305 C18  XEF 11 
XEF C19  C12 C  0 1 Y N N N N N 98.027  116.026 107.526 -6.098 0.063  -0.010 C19  XEF 12 
XEF C20  C13 C  0 1 Y N N N N N 100.549 116.135 108.396 -4.170 -1.289 -0.491 C20  XEF 13 
XEF C21  C14 C  0 1 N N N N N N 96.505  114.133 107.735 -6.195 2.373  0.223  C21  XEF 14 
XEF C22  C15 C  0 1 Y N N N N N 105.315 106.458 108.970 6.545  0.411  -0.152 C22  XEF 15 
XEF C23  C16 C  0 1 Y N N N N N 99.355  116.800 107.696 -5.523 -1.185 -0.237 C23  XEF 16 
XEF C24  C17 C  0 1 N N N N N N 95.769  115.257 107.016 -7.562 1.751  0.414  C24  XEF 17 
XEF C25  C18 C  0 1 Y N N N N N 104.958 107.589 111.315 4.831  2.109  -0.067 C25  XEF 18 
XEF C26  C19 C  0 1 Y N N N N N 105.400 105.084 109.676 7.482  1.378  -0.488 C26  XEF 19 
XEF C27  C20 C  0 1 Y N N N N N 105.038 106.261 112.011 5.762  3.044  -0.399 C27  XEF 20 
XEF C28  C21 C  0 1 Y N N N N N 105.256 105.001 111.196 7.090  2.693  -0.610 C28  XEF 21 
XEF N04  N1  N  0 1 N N N N N N 103.587 112.853 109.127 0.268  -0.812 0.205  N04  XEF 22 
XEF N05  N2  N  0 1 N N N N N N 104.863 110.301 109.165 3.031  -0.303 0.665  N05  XEF 23 
XEF N06  N3  N  0 1 Y N N N N N 105.250 108.422 107.411 4.997  -1.556 0.455  N06  XEF 24 
XEF N07  N4  N  0 1 N N N N N N 96.714  116.420 106.891 -7.418 0.424  0.262  N07  XEF 25 
XEF O03  O1  O  0 1 N N N N N N 94.658  115.224 106.627 -8.594 2.341  0.657  O03  XEF 26 
XEF S02  S1  S  0 1 Y N N N N N 105.415 106.880 107.480 6.638  -1.334 0.097  S02  XEF 27 
XEF CL01 CL1 CL 0 0 N N N N N N 102.080 117.035 108.589 -3.461 -2.849 -0.772 CL01 XEF 28 
XEF H1   H1  H  0 1 N N N N N N 101.284 113.070 110.145 -1.735 -1.026 -1.576 H1   XEF 29 
XEF H2   H2  H  0 1 N N N N N N 102.045 114.677 110.403 -1.514 0.685  -1.141 H2   XEF 30 
XEF H3   H3  H  0 1 N N N N N N 103.206 114.570 108.294 -1.336 0.055  1.250  H3   XEF 31 
XEF H4   H4  H  0 1 N N N N N N 102.240 113.154 107.756 -1.557 -1.657 0.816  H4   XEF 32 
XEF H5   H5  H  0 1 N N N N N N 103.394 109.835 110.570 2.421  -0.314 -1.346 H5   XEF 33 
XEF H6   H6  H  0 1 N N N N N N 104.531 111.142 111.044 2.773  1.297  -0.674 H6   XEF 34 
XEF H7   H7  H  0 1 N N N N N N 105.021 113.420 107.844 0.525  -2.412 1.544  H7   XEF 35 
XEF H8   H8  H  0 1 N N N N N N 103.917 112.116 107.290 0.877  -0.801 2.216  H8   XEF 36 
XEF H9   H9  H  0 1 N N N N N N 102.351 112.109 110.546 0.760  1.156  0.752  H9   XEF 37 
XEF H10  H10 H  0 1 N N N N N N 102.312 111.291 108.947 0.325  0.936  -0.960 H10  XEF 38 
XEF H11  H11 H  0 1 N N N N N N 106.083 111.136 107.692 2.974  -2.050 1.831  H11  XEF 39 
XEF H12  H12 H  0 1 N N N N N N 106.195 111.901 109.313 2.539  -2.271 0.119  H12  XEF 40 
XEF H13  H13 H  0 1 N N N N N N 99.002  112.911 109.135 -3.326 1.974  -0.334 H13  XEF 41 
XEF H14  H14 H  0 1 N N N N N N 95.980  113.880 108.668 -5.882 2.891  1.129  H14  XEF 42 
XEF H15  H15 H  0 1 N N N N N N 96.552  113.244 107.088 -6.199 3.057  -0.625 H15  XEF 43 
XEF H16  H16 H  0 1 N N N N N N 99.443  117.809 107.322 -6.136 -2.074 -0.209 H16  XEF 44 
XEF H17  H17 H  0 1 N N N N N N 104.800 108.492 111.885 3.805  2.406  0.094  H17  XEF 45 
XEF H18  H18 H  0 1 N N N N N N 105.561 104.186 109.097 8.513  1.101  -0.653 H18  XEF 46 
XEF H19  H19 H  0 1 N N N N N N 104.941 106.204 113.085 5.465  4.077  -0.498 H19  XEF 47 
XEF H20  H20 H  0 1 N N N N N N 105.310 104.042 111.690 7.814  3.450  -0.871 H20  XEF 48 
XEF H22  H22 H  0 1 N N N N N N 96.509  117.300 106.463 -8.148 -0.211 0.335  H22  XEF 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XEF O03 C24  DOUB N N 1  
XEF N07 C24  SING N N 2  
XEF N07 C19  SING N N 3  
XEF C24 C21  SING N N 4  
XEF N06 S02  SING Y N 5  
XEF N06 C14  DOUB Y N 6  
XEF S02 C22  SING Y N 7  
XEF C19 C23  DOUB Y N 8  
XEF C19 C17  SING Y N 9  
XEF C23 C20  SING Y N 10 
XEF C21 C17  SING N N 11 
XEF C17 C18  DOUB Y N 12 
XEF C08 C10  SING N N 13 
XEF C08 N04  SING N N 14 
XEF C20 CL01 SING N N 15 
XEF C20 C15  DOUB Y N 16 
XEF C10 N05  SING N N 17 
XEF C12 N04  SING N N 18 
XEF C12 C13  SING N N 19 
XEF C14 N05  SING N N 20 
XEF C14 C16  SING Y N 21 
XEF C18 C15  SING Y N 22 
XEF C15 C13  SING N N 23 
XEF C22 C26  DOUB Y N 24 
XEF C22 C16  SING Y N 25 
XEF N04 C09  SING N N 26 
XEF N05 C11  SING N N 27 
XEF C26 C28  SING Y N 28 
XEF C09 C11  SING N N 29 
XEF C16 C25  DOUB Y N 30 
XEF C28 C27  DOUB Y N 31 
XEF C25 C27  SING Y N 32 
XEF C13 H1   SING N N 33 
XEF C13 H2   SING N N 34 
XEF C12 H3   SING N N 35 
XEF C12 H4   SING N N 36 
XEF C11 H5   SING N N 37 
XEF C11 H6   SING N N 38 
XEF C08 H7   SING N N 39 
XEF C08 H8   SING N N 40 
XEF C09 H9   SING N N 41 
XEF C09 H10  SING N N 42 
XEF C10 H11  SING N N 43 
XEF C10 H12  SING N N 44 
XEF C18 H13  SING N N 45 
XEF C21 H14  SING N N 46 
XEF C21 H15  SING N N 47 
XEF C23 H16  SING N N 48 
XEF C25 H17  SING N N 49 
XEF C26 H18  SING N N 50 
XEF C27 H19  SING N N 51 
XEF C28 H20  SING N N 52 
XEF N07 H22  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XEF InChI            InChI                1.06  "InChI=1S/C21H21ClN4OS/c22-17-13-18-15(12-20(27)23-18)11-14(17)5-6-25-7-9-26(10-8-25)21-16-3-1-2-4-19(16)28-24-21/h1-4,11,13H,5-10,12H2,(H,23,27)" 
XEF InChIKey         InChI                1.06  MVWVFYHBGMAFLY-UHFFFAOYSA-N                                                                                                                        
XEF SMILES_CANONICAL CACTVS               3.385 "Clc1cc2NC(=O)Cc2cc1CCN3CCN(CC3)c4nsc5ccccc45"                                                                                                     
XEF SMILES           CACTVS               3.385 "Clc1cc2NC(=O)Cc2cc1CCN3CCN(CC3)c4nsc5ccccc45"                                                                                                     
XEF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(ns2)N3CCN(CC3)CCc4cc5c(cc4Cl)NC(=O)C5"                                                                                               
XEF SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(ns2)N3CCN(CC3)CCc4cc5c(cc4Cl)NC(=O)C5"                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           XEF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-[2-[4-(1,2-benzothiazol-3-yl)piperazin-1-yl]ethyl]-6-chloranyl-1,3-dihydroindol-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XEF "Create component" 2023-10-31 PDBJ 
XEF "Initial release"  2024-08-07 RCSB 
XEF "Modify name"      2024-11-11 PDBJ 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      XEF 
_pdbx_chem_comp_synonyms.name         "5-[2-[4-(1,2-benzothiazol-3-yl)piperazin-1-yl]ethyl]-6-chloranyl-1,3-dihydroindol-2-one" 
_pdbx_chem_comp_synonyms.provenance   DRUGBANK 
_pdbx_chem_comp_synonyms.type         ? 
# 
