data_XLF
#

_chem_comp.id                                   XLF
_chem_comp.name                                 beta-D-xylulofuranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "beta-D-xylulose; D-xylulose; xylulose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-04-18
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XLF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3CTP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  XLF  beta-D-xylulose  PDB  ?  
2  XLF  D-xylulose       PDB  ?  
3  XLF  xylulose         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XLF  O4   O10   O  0  1  N  N  N  28.514  30.977  3.262   2.128   1.288   0.834  O4   XLF   1  
XLF  C4   C4    C  0  1  N  N  R  27.234  30.377  3.476   1.801   0.174   0.001  C4   XLF   2  
XLF  C5   C5    C  0  1  N  N  N  26.192  31.483  3.397   1.154   0.645  -1.326  C5   XLF   3  
XLF  O5   O1    O  0  1  N  N  N  25.732  31.689  4.737  -0.223   0.882  -0.964  O5   XLF   4  
XLF  C3   C3    C  0  1  N  N  S  27.117  29.845  4.895   0.668  -0.673   0.631  C3   XLF   5  
XLF  O3   O9    O  0  1  N  N  N  27.147  28.412  4.929   0.875  -2.062   0.367  O3   XLF   6  
XLF  C2   C2    C  0  1  N  N  R  25.775  30.384  5.308  -0.610  -0.175  -0.070  C2   XLF   7  
XLF  O2   O8    O  0  1  N  Y  N  24.708  29.590  4.750  -1.206  -1.242  -0.810  O2   XLF   8  
XLF  C1   C6    C  0  1  N  N  N  25.627  30.503  6.811  -1.600   0.358   0.968  C1   XLF   9  
XLF  O1   O7    O  0  1  N  N  N  24.375  31.137  7.114  -2.774   0.832   0.308  O1   XLF  10  
XLF  HO4  HO10  H  0  1  N  Y  N  28.650  31.110  2.331   2.833   1.849   0.481  HO4  XLF  11  
XLF  H4   H4    H  0  1  N  N  N  27.099  29.573  2.737   2.683  -0.438  -0.191  H4   XLF  12  
XLF  H51  H5    H  0  1  N  N  N  26.635  32.405  2.993   1.623   1.565  -1.676  H51  XLF  13  
XLF  H52  H5A   H  0  1  N  N  N  25.364  31.207  2.727   1.223  -0.135  -2.085  H52  XLF  14  
XLF  H3   H3    H  0  1  N  N  N  27.943  30.148  5.555   0.611  -0.494   1.705  H3   XLF  15  
XLF  HO3  HO9   H  0  1  N  Y  N  27.154  28.074  4.041   1.696  -2.414   0.736  HO3  XLF  16  
XLF  HO2  HO8   H  0  1  N  Y  N  24.058  29.415  5.421  -2.010  -0.991  -1.285  HO2  XLF  17  
XLF  H11  H6    H  0  1  N  N  N  25.651  29.501  7.264  -1.869  -0.442   1.658  H11  XLF  18  
XLF  H12  H6A   H  0  1  N  N  N  26.453  31.105  7.217  -1.139   1.176   1.523  H12  XLF  19  
XLF  HO1  HO7   H  0  1  N  Y  N  24.309  31.277  8.051  -3.447   1.185   0.906  HO1  XLF  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XLF  O4  C4   SING  N  N   1  
XLF  O4  HO4  SING  N  N   2  
XLF  C5  C4   SING  N  N   3  
XLF  C4  C3   SING  N  N   4  
XLF  C4  H4   SING  N  N   5  
XLF  C5  O5   SING  N  N   6  
XLF  C5  H51  SING  N  N   7  
XLF  C5  H52  SING  N  N   8  
XLF  O5  C2   SING  N  N   9  
XLF  C3  O3   SING  N  N  10  
XLF  C3  C2   SING  N  N  11  
XLF  C3  H3   SING  N  N  12  
XLF  O3  HO3  SING  N  N  13  
XLF  O2  C2   SING  N  N  14  
XLF  C2  C1   SING  N  N  15  
XLF  O2  HO2  SING  N  N  16  
XLF  C1  O1   SING  N  N  17  
XLF  C1  H11  SING  N  N  18  
XLF  C1  H12  SING  N  N  19  
XLF  O1  HO1  SING  N  N  20  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XLF  SMILES            ACDLabs               10.04  "OCC1(O)OCC(O)C1O"  
XLF  SMILES_CANONICAL  CACTVS                3.341  "OC[C@@]1(O)OC[C@@H](O)[C@@H]1O"  
XLF  SMILES            CACTVS                3.341  "OC[C]1(O)OC[CH](O)[CH]1O"  
XLF  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@H]([C@@H]([C@](O1)(CO)O)O)O"  
XLF  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C(C(C(O1)(CO)O)O)O"  
XLF  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-2-5(9)4(8)3(7)1-10-5/h3-4,6-9H,1-2H2/t3-,4+,5-/m1/s1"  
XLF  InChIKey          InChI                 1.03   LQXVFWRQNMEDEE-MROZADKFSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XLF  "SYSTEMATIC NAME"                      ACDLabs               10.04  beta-D-xylulofuranose  
XLF  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2R,3S,4R)-2-(hydroxymethyl)oxolane-2,3,4-triol"  
XLF  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DXulfb  
XLF  "COMMON NAME"                          GMML                  1.0    b-D-xylulofuranose  
XLF  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    b-D-Xulf  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
XLF  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
XLF  "CARBOHYDRATE RING"                    furanose  PDB  ?  
XLF  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
XLF  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XLF  "Create component"          2008-04-18  RCSB  
XLF  "Modify descriptor"         2011-06-04  RCSB  
XLF  "Other modification"        2019-08-12  RCSB  
XLF  "Other modification"        2019-12-19  RCSB  
XLF  "Other modification"        2020-07-03  RCSB  
XLF  "Modify synonyms"           2020-07-17  RCSB  
XLF  "Modify atom id"            2020-07-17  RCSB  
XLF  "Modify component atom id"  2020-07-17  RCSB  
##
