data_2YG
# 
_chem_comp.id                                    2YG 
_chem_comp.name                                  N~6~-L-lysyl-L-lysine 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C12 H26 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-14 
_chem_comp.pdbx_modified_date                    2014-04-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        274.360 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2YG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4Q3C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2YG O2  O2  O 0 1 N N N -12.250 42.860 16.645 -6.855 -1.885 0.258  O2  2YG 1  
2YG C11 C11 C 0 1 N N N -11.541 41.984 17.127 -6.448 -0.911 -0.329 C11 2YG 2  
2YG O1  O1  O 0 1 N Y N -11.854 41.436 18.297 -6.933 -0.607 -1.543 O1  2YG 3  
2YG C   C   C 0 1 N N S -10.307 41.515 16.418 -5.400 -0.033 0.305  C   2YG 4  
2YG N   N   N 0 1 N N N -10.506 41.656 14.994 -5.383 -0.260 1.756  N   2YG 5  
2YG C1  C1  C 0 1 N N N -9.147  42.362 16.892 -4.028 -0.373 -0.280 C1  2YG 6  
2YG C2  C2  C 0 1 N N N -7.820  41.895 16.318 -2.983 0.600  0.270  C2  2YG 7  
2YG C3  C3  C 0 1 N N N -6.691  42.653 16.994 -1.611 0.260  -0.315 C3  2YG 8  
2YG C4  C4  C 0 1 N N N -5.340  42.135 16.545 -0.566 1.233  0.235  C4  2YG 9  
2YG N1  N1  N 0 1 N N N -4.312  43.010 17.045 0.748  0.907  -0.325 N1  2YG 10 
2YG C5  C5  C 0 1 N N N -3.727  42.734 18.201 1.827  1.637  0.020  C5  2YG 11 
2YG O   O   O 0 1 N N N -3.952  41.728 18.843 1.711  2.563  0.794  O   2YG 12 
2YG C6  C6  C 0 1 N N S -2.779  43.724 18.765 3.178  1.302  -0.556 C6  2YG 13 
2YG N2  N2  N 0 1 N N N -1.453  43.400 18.301 4.065  2.466  -0.434 N2  2YG 14 
2YG C7  C7  C 0 1 N N N -3.139  45.146 18.355 3.780  0.120  0.208  C7  2YG 15 
2YG C8  C8  C 0 1 N N N -2.881  46.093 19.504 5.094  -0.300 -0.455 C8  2YG 16 
2YG C9  C9  C 0 1 N N N -1.433  46.048 19.962 5.695  -1.481 0.309  C9  2YG 17 
2YG C10 C10 C 0 1 N N N -1.058  44.962 20.964 7.009  -1.901 -0.354 C10 2YG 18 
2YG N3  N3  N 0 1 N N N -1.977  45.046 22.080 7.586  -3.036 0.380  N3  2YG 19 
2YG H1  H1  H 0 1 N Y N -12.652 41.831 18.629 -7.607 -1.197 -1.907 H1  2YG 20 
2YG H2  H2  H 0 1 N N N -10.116 40.462 16.673 -5.631 1.013  0.103  H2  2YG 21 
2YG H3  H3  H 0 1 N N N -11.277 41.087 14.707 -6.258 0.019  2.176  H3  2YG 22 
2YG H4  H4  H 0 1 N N N -10.699 42.613 14.778 -5.170 -1.223 1.969  H4  2YG 23 
2YG H6  H6  H 0 1 N N N -9.096  42.309 17.990 -3.757 -1.392 -0.003 H6  2YG 24 
2YG H7  H7  H 0 1 N N N -9.320  43.403 16.582 -4.065 -0.290 -1.366 H7  2YG 25 
2YG H8  H8  H 0 1 N N N -7.700  40.817 16.499 -3.254 1.619  -0.008 H8  2YG 26 
2YG H9  H9  H 0 1 N N N -7.798  42.090 15.236 -2.946 0.517  1.356  H9  2YG 27 
2YG H10 H10 H 0 1 N N N -6.770  43.720 16.737 -1.340 -0.759 -0.038 H10 2YG 28 
2YG H11 H11 H 0 1 N N N -6.778  42.531 18.084 -1.648 0.343  -1.401 H11 2YG 29 
2YG H12 H12 H 0 1 N N N -5.184  41.120 16.940 -0.837 2.252  -0.043 H12 2YG 30 
2YG H13 H13 H 0 1 N N N -5.301  42.111 15.446 -0.529 1.150  1.321  H13 2YG 31 
2YG H14 H14 H 0 1 N N N -4.042  43.820 16.524 0.841  0.167  -0.945 H14 2YG 32 
2YG H15 H15 H 0 1 N N N -2.809  43.661 19.863 3.070  1.037  -1.608 H15 2YG 33 
2YG H16 H16 H 0 1 N N N -0.799  44.059 18.673 3.723  3.241  -0.983 H16 2YG 34 
2YG H17 H17 H 0 1 N N N -1.209  42.480 18.607 4.182  2.732  0.532  H17 2YG 35 
2YG H19 H19 H 0 1 N N N -2.525  45.443 17.492 3.971  0.415  1.240  H19 2YG 36 
2YG H20 H20 H 0 1 N N N -4.203  45.188 18.080 3.081  -0.716 0.192  H20 2YG 37 
2YG H21 H21 H 0 1 N N N -3.120  47.117 19.181 4.902  -0.594 -1.487 H21 2YG 38 
2YG H22 H22 H 0 1 N N N -3.529  45.814 20.347 5.792  0.537  -0.439 H22 2YG 39 
2YG H23 H23 H 0 1 N N N -0.807  45.906 19.069 5.886  -1.187 1.341  H23 2YG 40 
2YG H24 H24 H 0 1 N N N -1.200  47.019 20.423 4.996  -2.318 0.293  H24 2YG 41 
2YG H25 H25 H 0 1 N N N -1.137  43.973 20.489 6.817  -2.196 -1.385 H25 2YG 42 
2YG H26 H26 H 0 1 N N N -0.028  45.119 21.316 7.707  -1.065 -0.338 H26 2YG 43 
2YG H27 H27 H 0 1 N N N -1.751  44.341 22.753 8.455  -3.332 -0.038 H27 2YG 44 
2YG H28 H28 H 0 1 N N N -1.904  45.948 22.505 7.713  -2.809 1.355  H28 2YG 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2YG N   C   SING N N 1  
2YG C2  C1  SING N N 2  
2YG C2  C3  SING N N 3  
2YG C   C1  SING N N 4  
2YG C   C11 SING N N 5  
2YG C4  C3  SING N N 6  
2YG C4  N1  SING N N 7  
2YG O2  C11 DOUB N N 8  
2YG N1  C5  SING N N 9  
2YG C11 O1  SING N N 10 
2YG C5  C6  SING N N 11 
2YG C5  O   DOUB N N 12 
2YG N2  C6  SING N N 13 
2YG C7  C6  SING N N 14 
2YG C7  C8  SING N N 15 
2YG C8  C9  SING N N 16 
2YG C9  C10 SING N N 17 
2YG C10 N3  SING N N 18 
2YG O1  H1  SING N N 19 
2YG C   H2  SING N N 20 
2YG N   H3  SING N N 21 
2YG N   H4  SING N N 22 
2YG C1  H6  SING N N 23 
2YG C1  H7  SING N N 24 
2YG C2  H8  SING N N 25 
2YG C2  H9  SING N N 26 
2YG C3  H10 SING N N 27 
2YG C3  H11 SING N N 28 
2YG C4  H12 SING N N 29 
2YG C4  H13 SING N N 30 
2YG N1  H14 SING N N 31 
2YG C6  H15 SING N N 32 
2YG N2  H16 SING N N 33 
2YG N2  H17 SING N N 34 
2YG C7  H19 SING N N 35 
2YG C7  H20 SING N N 36 
2YG C8  H21 SING N N 37 
2YG C8  H22 SING N N 38 
2YG C9  H23 SING N N 39 
2YG C9  H24 SING N N 40 
2YG C10 H25 SING N N 41 
2YG C10 H26 SING N N 42 
2YG N3  H27 SING N N 43 
2YG N3  H28 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2YG SMILES           ACDLabs              12.01 "O=C(O)C(N)CCCCNC(=O)C(N)CCCCN"                                                                                            
2YG InChI            InChI                1.03  "InChI=1S/C12H26N4O3/c13-7-3-1-5-9(14)11(17)16-8-4-2-6-10(15)12(18)19/h9-10H,1-8,13-15H2,(H,16,17)(H,18,19)/t9-,10-/m0/s1" 
2YG InChIKey         InChI                1.03  ISWYJQKGNGBKJG-UWVGGRQHSA-N                                                                                                
2YG SMILES_CANONICAL CACTVS               3.385 "NCCCC[C@H](N)C(=O)NCCCC[C@H](N)C(O)=O"                                                                                    
2YG SMILES           CACTVS               3.385 "NCCCC[CH](N)C(=O)NCCCC[CH](N)C(O)=O"                                                                                      
2YG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C(CCN)C[C@@H](C(=O)NCCCC[C@@H](C(=O)O)N)N"                                                                                
2YG SMILES           "OpenEye OEToolkits" 1.7.6 "C(CCN)CC(C(=O)NCCCCC(C(=O)O)N)N"                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2YG "SYSTEMATIC NAME" ACDLabs              12.01 N~6~-L-lysyl-L-lysine                                                
2YG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-6-[[(2S)-2,6-bis(azanyl)hexanoyl]amino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2YG "Create component" 2014-04-14 RCSB 
2YG "Initial release"  2014-04-23 RCSB 
# 
