data_5LG
# 
_chem_comp.id                                    5LG 
_chem_comp.name                                  "(phenylmethyl) ~{N}-[(8~{S},11~{S},14~{S})-8-(hydroxymethyl)-11-(2-methylpropyl)-5,10,13-tris(oxidanylidene)-1,4,9,12,17,18-hexazabicyclo[14.2.1]nonadeca-16(19),17-dien-14-yl]carbamate" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C26 H37 N7 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        543.615 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5E0G 
_chem_comp.pdbx_subcomponent_list                "PHQ 5LB GAU LEU" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5LG C30 C8  C 0 1 N N N N N N 18.581 -55.131 140.242 2.687  1.154  0.373  C1   PHQ 1  
5LG O39 O3  O 0 1 N N N N N N 19.081 -56.037 140.820 2.154  0.808  1.408  O1   PHQ 2  
5LG O31 O2  O 0 1 N N N N N N 17.950 -54.084 140.906 4.021  1.044  0.232  O2   PHQ 3  
5LG C1  C20 C 0 1 N N N N N N ?      ?       ?       4.760  0.502  1.359  C2   PHQ 4  
5LG C2  C26 C 0 1 Y N N N N N ?      ?       ?       6.227  0.454  1.021  C3   PHQ 5  
5LG C3  C21 C 0 1 Y N N N N N ?      ?       ?       7.039  1.536  1.306  C4   PHQ 6  
5LG C4  C22 C 0 1 Y N N N N N ?      ?       ?       8.385  1.492  0.996  C5   PHQ 7  
5LG C5  C23 C 0 1 Y N N N N N ?      ?       ?       8.920  0.365  0.400  C6   PHQ 8  
5LG C6  C24 C 0 1 Y N N N N N ?      ?       ?       8.109  -0.718 0.116  C7   PHQ 9  
5LG C7  C25 C 0 1 Y N N N N N ?      ?       ?       6.764  -0.675 0.430  C8   PHQ 10 
5LG N15 N1  N 0 1 N N N N N N 17.006 -53.282 134.198 -5.716 1.383  -0.016 N15  5LB 11 
5LG C16 C1  C 0 1 N N N N N N 15.713 -53.797 133.778 -5.008 2.352  0.824  C16  5LB 12 
5LG C17 C2  C 0 1 N N N N N N 15.673 -55.315 133.757 -4.769 3.635  0.026  C17  5LB 13 
5LG N26 N2  N 0 1 Y N N N N N 16.105 -55.831 135.039 -3.332 3.797  -0.214 N26  5LB 14 
5LG O01 O1  O 0 1 N N N N N N 20.058 -54.278 136.680 -1.219 0.417  -1.427 O01  5LB 15 
5LG C02 C3  C 0 1 N N N N N N 20.251 -55.395 137.048 -0.159 0.444  -0.839 C02  5LB 16 
5LG C22 C4  C 0 1 N N S N N N 19.428 -56.071 138.139 0.488  1.759  -0.487 C22  5LB 17 
5LG C23 C5  C 0 1 N N N N N N 18.538 -57.191 137.598 -0.037 2.852  -1.420 C23  5LB 18 
5LG C24 C6  C 0 1 Y N N N N N 17.384 -56.675 136.760 -1.289 3.454  -0.838 C24  5LB 19 
5LG C25 C7  C 0 1 Y N N N N N 17.346 -56.207 135.405 -2.527 2.906  -0.836 C25  5LB 20 
5LG N27 N3  N 0 1 Y N N N N N 15.378 -56.045 136.111 -2.620 4.811  0.134  N27  5LB 21 
5LG N28 N4  N 0 1 Y N N N N N 16.115 -56.537 137.106 -1.396 4.637  -0.222 N28  5LB 22 
5LG N29 N5  N 0 1 N N N N N N 18.619 -55.077 138.804 1.941  1.644  -0.637 N29  5LB 23 
5LG N10 N7  N 0 1 N N N N N N 21.860 -54.068 133.609 -2.528 -2.600 -0.016 N    GAU 24 
5LG C11 C15 C 0 1 N N S N N N 21.212 -53.577 132.413 -3.419 -2.827 1.148  CA   GAU 25 
5LG C12 C16 C 0 1 N N N N N N 20.461 -52.301 132.774 -4.747 -2.112 0.890  CB   GAU 26 
5LG C13 C17 C 0 1 N N N N N N 19.360 -52.540 133.800 -4.511 -0.601 0.840  CG   GAU 27 
5LG C14 C18 C 0 1 N N N N N N 18.063 -53.112 133.240 -5.758 0.084  0.341  CD   GAU 28 
5LG O18 O5  O 0 1 N N N N N N 17.886 -53.414 132.093 -6.798 -0.534 0.262  OE1  GAU 29 
5LG C19 C19 C 0 1 N N N N N N 22.275 -53.323 131.350 -3.668 -4.327 1.320  C    GAU 30 
5LG O20 O6  O 0 1 N N N N N N 22.921 -54.494 130.961 -2.445 -4.975 1.676  OXT  GAU 31 
5LG N03 N6  N 0 1 N N N N N N 21.319 -56.188 136.513 0.467  -0.715 -0.486 N    LEU 32 
5LG C04 C9  C 0 1 N N S N N N 22.183 -55.627 135.502 -0.252 -1.966 -0.805 CA   LEU 33 
5LG C09 C10 C 0 1 N N N N N N 21.396 -55.260 134.256 -1.239 -2.274 0.308  C    LEU 34 
5LG O21 O4  O 0 1 N N N N N N 20.476 -55.899 133.846 -0.888 -2.217 1.468  O    LEU 35 
5LG C05 C11 C 0 1 N N N N N N 23.297 -56.583 135.114 0.749  -3.116 -0.930 CB   LEU 36 
5LG C06 C12 C 0 1 N N N N N N 24.182 -56.960 136.288 1.669  -2.863 -2.127 CG   LEU 37 
5LG C07 C13 C 0 1 N N N N N N 25.211 -57.990 135.825 2.748  -3.947 -2.179 CD1  LEU 38 
5LG C08 C14 C 0 1 N N N N N N 24.852 -55.747 136.934 0.847  -2.899 -3.417 CD2  LEU 39 
5LG H11 H11 H 0 1 N N N N N N ?      ?       ?       4.609  1.137  2.232  H21  PHQ 40 
5LG H32 H32 H 0 1 N N N N N N ?      ?       ?       4.404  -0.505 1.577  H22  PHQ 41 
5LG H33 H33 H 0 1 N N N N N N ?      ?       ?       6.620  2.417  1.771  H41  PHQ 42 
5LG H34 H34 H 0 1 N N N N N N ?      ?       ?       9.018  2.338  1.218  H51  PHQ 43 
5LG H35 H35 H 0 1 N N N N N N ?      ?       ?       9.972  0.331  0.157  H61  PHQ 44 
5LG H36 H36 H 0 1 N N N N N N ?      ?       ?       8.528  -1.598 -0.350 H71  PHQ 45 
5LG H37 H37 H 0 1 N N N N N N ?      ?       ?       6.130  -1.521 0.208  H81  PHQ 46 
5LG H2  H2  H 0 1 N N N N N N 15.496 -53.424 132.766 -5.610 2.577  1.705  H7   5LB 47 
5LG H3  H3  H 0 1 N N N N N N 14.944 -53.433 134.476 -4.051 1.933  1.135  H8   5LB 48 
5LG H5  H5  H 0 1 N N N N N N 16.343 -55.688 132.968 -5.292 3.573  -0.928 H9   5LB 49 
5LG H4  H4  H 0 1 N N N N N N 14.645 -55.651 133.555 -5.142 4.490  0.591  H10  5LB 50 
5LG H6  H6  H 0 1 N N N N N N 20.125 -56.513 138.867 0.249  2.017  0.545  H26  5LB 51 
5LG H7  H7  H 0 1 N N N N N N 18.129 -57.756 138.449 0.721  3.627  -1.533 H27  5LB 52 
5LG H8  H8  H 0 1 N N N N N N 19.153 -57.858 136.976 -0.261 2.419  -2.395 H28  5LB 53 
5LG H9  H9  H 0 1 N N N N N N 18.208 -56.161 134.756 -2.814 1.950  -1.249 H29  5LB 54 
5LG H1  H1  H 0 1 N N N N N N 17.160 -53.045 135.157 -6.158 1.677  -0.828 H2   5LB 55 
5LG H10 H10 H 0 1 N N N N N N 18.110 -54.385 138.291 2.366  1.921  -1.464 H1   5LB 56 
5LG H23 H23 H 0 1 N N N N N N 22.640 -53.571 133.989 -2.835 -2.676 -0.933 H    GAU 57 
5LG H24 H24 H 0 1 N N N N N N 20.496 -54.322 132.036 -2.955 -2.424 2.048  HA   GAU 58 
5LG H25 H25 H 0 1 N N N N N N 21.177 -51.576 133.188 -5.161 -2.447 -0.062 HB2  GAU 59 
5LG H26 H26 H 0 1 N N N N N N 20.008 -51.888 131.861 -5.447 -2.344 1.692  HB3  GAU 60 
5LG H27 H27 H 0 1 N N N N N N 19.744 -53.243 134.554 -4.271 -0.238 1.839  HG2  GAU 61 
5LG H28 H28 H 0 1 N N N N N N 19.128 -51.578 134.280 -3.682 -0.384 0.166  HG3  GAU 62 
5LG H29 H29 H 0 1 N N N N N N 23.022 -52.625 131.756 -4.406 -4.485 2.107  HO1  GAU 63 
5LG H30 H30 H 0 1 N N N N N N 21.794 -52.874 130.468 -4.041 -4.743 0.384  HO2  GAU 64 
5LG H31 H31 H 0 1 N N N N N N 23.573 -54.292 130.300 -2.528 -5.930 1.802  HXT  GAU 65 
5LG H12 H12 H 0 1 N N N N N N 21.464 -57.123 136.838 1.334  -0.717 -0.052 H    LEU 66 
5LG H13 H13 H 0 1 N N N N N N 22.644 -54.709 135.895 -0.793 -1.848 -1.743 HA   LEU 67 
5LG H14 H14 H 0 1 N N N N N N 22.847 -57.499 134.704 1.346  -3.178 -0.020 HB2  LEU 68 
5LG H15 H15 H 0 1 N N N N N N 23.919 -56.104 134.344 0.211  -4.052 -1.077 HB3  LEU 69 
5LG H16 H16 H 0 1 N N N N N N 23.548 -57.438 137.049 2.140  -1.886 -2.023 HG   LEU 70 
5LG H17 H17 H 0 1 N N N N N N 25.857 -58.269 136.670 2.276  -4.924 -2.282 HD11 LEU 71 
5LG H18 H18 H 0 1 N N N N N N 24.691 -58.884 135.450 3.402  -3.767 -3.031 HD12 LEU 72 
5LG H19 H19 H 0 1 N N N N N N 25.825 -57.559 135.021 3.333  -3.921 -1.259 HD13 LEU 73 
5LG H20 H20 H 0 1 N N N N N N 25.478 -56.078 137.775 0.079  -2.128 -3.380 HD21 LEU 74 
5LG H21 H21 H 0 1 N N N N N N 25.479 -55.235 136.189 1.502  -2.720 -4.270 HD22 LEU 75 
5LG H22 H22 H 0 1 N N N N N N 24.080 -55.055 137.302 0.376  -3.877 -3.521 HD23 LEU 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5LG O20 C19 SING N N 1  
5LG C19 C11 SING N N 2  
5LG O18 C14 DOUB N N 3  
5LG C11 C12 SING N N 4  
5LG C11 N10 SING N N 5  
5LG C12 C13 SING N N 6  
5LG C14 C13 SING N N 7  
5LG C14 N15 SING N N 8  
5LG N10 C09 SING N N 9  
5LG C17 C16 SING N N 10 
5LG C17 N26 SING N N 11 
5LG C16 N15 SING N N 12 
5LG O21 C09 DOUB N N 13 
5LG C09 C04 SING N N 14 
5LG N26 C25 SING Y N 15 
5LG N26 N27 SING Y N 16 
5LG C05 C04 SING N N 17 
5LG C05 C06 SING N N 18 
5LG C25 C24 DOUB Y N 19 
5LG C04 N03 SING N N 20 
5LG C07 C06 SING N N 21 
5LG N27 N28 DOUB Y N 22 
5LG C06 C08 SING N N 23 
5LG N03 C02 SING N N 24 
5LG O01 C02 DOUB N N 25 
5LG C24 N28 SING Y N 26 
5LG C24 C23 SING N N 27 
5LG C02 C22 SING N N 28 
5LG C23 C22 SING N N 29 
5LG C22 N29 SING N N 30 
5LG N29 C30 SING N N 31 
5LG C30 O39 DOUB N N 32 
5LG C30 O31 SING N N 33 
5LG N15 H1  SING N N 34 
5LG C16 H2  SING N N 35 
5LG C16 H3  SING N N 36 
5LG C17 H4  SING N N 37 
5LG C17 H5  SING N N 38 
5LG C22 H6  SING N N 39 
5LG C23 H7  SING N N 40 
5LG C23 H8  SING N N 41 
5LG C25 H9  SING N N 42 
5LG N29 H10 SING N N 43 
5LG N03 H12 SING N N 44 
5LG C04 H13 SING N N 45 
5LG C05 H14 SING N N 46 
5LG C05 H15 SING N N 47 
5LG C06 H16 SING N N 48 
5LG C07 H17 SING N N 49 
5LG C07 H18 SING N N 50 
5LG C07 H19 SING N N 51 
5LG C08 H20 SING N N 52 
5LG C08 H21 SING N N 53 
5LG C08 H22 SING N N 54 
5LG N10 H23 SING N N 55 
5LG C11 H24 SING N N 56 
5LG C12 H25 SING N N 57 
5LG C12 H26 SING N N 58 
5LG C13 H27 SING N N 59 
5LG C13 H28 SING N N 60 
5LG C19 H29 SING N N 61 
5LG C19 H30 SING N N 62 
5LG O20 H31 SING N N 63 
5LG O31 C1  SING N N 64 
5LG C1  C2  SING N N 65 
5LG C2  C3  DOUB Y N 66 
5LG C3  C4  SING Y N 67 
5LG C4  C5  DOUB Y N 68 
5LG C5  C6  SING Y N 69 
5LG C6  C7  DOUB Y N 70 
5LG C7  C2  SING Y N 71 
5LG C1  H11 SING N N 72 
5LG C1  H32 SING N N 73 
5LG C3  H33 SING N N 74 
5LG C4  H34 SING N N 75 
5LG C5  H35 SING N N 76 
5LG C6  H36 SING N N 77 
5LG C7  H37 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5LG InChI            InChI                1.03  "InChI=1S/C26H37N7O6/c1-17(2)12-21-24(36)28-19(15-34)8-9-23(35)27-10-11-33-14-20(31-32-33)13-22(25(37)29-21)30-26(38)39-16-18-6-4-3-5-7-18/h3-7,14,17,19,21-22,34H,8-13,15-16H2,1-2H3,(H,27,35)(H,28,36)(H,29,37)(H,30,38)/t19-,21-,22-/m0/s1" 
5LG InChIKey         InChI                1.03  SZXOIWBJCNDQNX-BVSLBCMMSA-N                                                                                                                                                                                                                    
5LG SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@@H]1NC(=O)[C@H](Cc2cn(CCNC(=O)CC[C@@H](CO)NC1=O)nn2)NC(=O)OCc3ccccc3"                                                                                                                                                                
5LG SMILES           CACTVS               3.385 "CC(C)C[CH]1NC(=O)[CH](Cc2cn(CCNC(=O)CC[CH](CO)NC1=O)nn2)NC(=O)OCc3ccccc3"                                                                                                                                                                     
5LG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC(C)C[C@H]1C(=O)N[C@@H](CCC(=O)NCCn2cc(nn2)C[C@@H](C(=O)N1)NC(=O)OCc3ccccc3)CO"                                                                                                                                                              
5LG SMILES           "OpenEye OEToolkits" 2.0.4 "CC(C)CC1C(=O)NC(CCC(=O)NCCn2cc(nn2)CC(C(=O)N1)NC(=O)OCc3ccccc3)CO"                                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           5LG 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.4 
_pdbx_chem_comp_identifier.identifier        "(phenylmethyl) ~{N}-[(8~{S},11~{S},14~{S})-8-(hydroxymethyl)-11-(2-methylpropyl)-5,10,13-tris(oxidanylidene)-1,4,9,12,17,18-hexazabicyclo[14.2.1]nonadeca-16(19),17-dien-14-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5LG "Create component"         2015-10-20 RCSB 
5LG "Modify subcomponent list" 2015-10-20 RCSB 
5LG "Other modification"       2015-10-20 RCSB 
5LG "Initial release"          2016-05-04 RCSB 
5LG "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5LG 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
