data_8OG
#

_chem_comp.id                                   8OG
_chem_comp.name                                 "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C10 H14 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2000-10-03
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        G42
_chem_comp.formula_weight                       363.221
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    8OG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1FYI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8OG  OP3     O3P   O  0  1  N  Y  N  7.429   2.159  13.160  -2.374  -1.097   5.276  OP3     8OG   1  
8OG  P       P     P  0  1  N  N  N  8.128   0.716  13.345  -1.154  -0.182   4.760  P       8OG   2  
8OG  OP1     O1P   O  0  1  N  N  N  9.570   0.857  13.045  -1.651   1.177   4.455  OP1     8OG   3  
8OG  OP2     O2P   O  0  1  N  Y  N  7.319  -0.291  12.620  -0.026  -0.096   5.906  OP2     8OG   4  
8OG  "O5'"   O5*   O  0  1  N  N  N  7.962   0.444  14.922  -0.520  -0.832   3.431  "O5'"   8OG   5  
8OG  "C5'"   C5*   C  0  1  N  N  N  8.821   1.090  15.868   0.551   0.020   3.025  "C5'"   8OG   6  
8OG  "C4'"   C4*   C  0  1  N  N  R  8.557   0.605  17.292   1.200  -0.543   1.759  "C4'"   8OG   7  
8OG  "O4'"   O4*   O  0  1  N  N  N  7.204   0.919  17.702   0.277  -0.503   0.648  "O4'"   8OG   8  
8OG  "C3'"   C3*   C  0  1  N  N  S  8.735  -0.908  17.399   2.369   0.362   1.295  "C3'"   8OG   9  
8OG  "O3'"   O3*   O  0  1  N  N  N  9.677  -1.231  18.432   3.583   0.011   1.960  "O3'"   8OG  10  
8OG  "C2'"   C2*   C  0  1  N  N  N  7.362  -1.441  17.714   2.451   0.036  -0.215  "C2'"   8OG  11  
8OG  "C1'"   C1*   C  0  1  N  N  R  6.602  -0.255  18.274   1.066  -0.549  -0.552  "C1'"   8OG  12  
8OG  N9      N9    N  0  1  N  N  N  5.163  -0.328  17.949   0.428   0.251  -1.599  N9      8OG  13  
8OG  C8      C8    C  0  1  N  N  N  4.182  -0.132  18.866   0.134   1.562  -1.514  C8      8OG  14  
8OG  N7      N7    N  0  1  N  N  N  2.999  -0.208  18.425  -0.447   1.967  -2.660  N7      8OG  15  
8OG  C5      C5    C  0  1  N  N  N  3.127  -0.485  17.066  -0.526   0.864  -3.514  C5      8OG  16  
8OG  C6      C6    C  0  1  N  N  N  2.154  -0.681  16.054  -1.019   0.670  -4.812  C6      8OG  17  
8OG  O6      O6    O  0  1  N  N  N  0.931  -0.645  16.151  -1.513   1.595  -5.437  O6      8OG  18  
8OG  N1      N1    N  0  1  N  N  N  2.753  -0.941  14.827  -0.930  -0.563  -5.358  N1      8OG  19  
8OG  C2      C2    C  0  1  N  N  N  4.117  -1.003  14.598  -0.381  -1.587  -4.647  C2      8OG  20  
8OG  N2      N2    N  0  1  N  N  N  4.494  -1.251  13.345  -0.306  -2.832  -5.218  N2      8OG  21  
8OG  N3      N3    N  0  1  N  N  N  5.044  -0.818  15.548   0.082  -1.411  -3.429  N3      8OG  22  
8OG  C4      C4    C  0  1  N  N  N  4.490  -0.565  16.752   0.028  -0.213  -2.835  C4      8OG  23  
8OG  O8      O8    O  0  1  N  N  N  4.496   0.091  20.033   0.357   2.271  -0.551  O8      8OG  24  
8OG  HOP3    3HOP  H  0  0  N  N  N  6.503   2.068  13.352  -2.725  -0.673   6.071  HOP3    8OG  25  
8OG  HOP2    2HOP  H  0  0  N  N  N  7.730  -1.140  12.728   0.270  -1.001   6.075  HOP2    8OG  26  
8OG  "H5'"   1H5*  H  0  1  N  N  N  8.655   2.166  15.823   1.294   0.074   3.821  "H5'"   8OG  27  
8OG  "H5''"  2H5*  H  0  0  N  N  N  9.858   0.878  15.608   0.164   1.018   2.820  "H5''"  8OG  28  
8OG  "H4'"   H4*   H  0  1  N  N  N  9.255   1.094  17.970   1.549  -1.562   1.930  "H4'"   8OG  29  
8OG  "H3'"   H3*   H  0  1  N  N  N  9.068  -1.308  16.446   2.131   1.414   1.453  "H3'"   8OG  30  
8OG  "HO3'"  H3T   H  0  0  N  Y  N  9.787  -2.172  18.498   4.285   0.544   1.562  "HO3'"  8OG  31  
8OG  "H2'"   1H2*  H  0  1  N  N  N  6.884  -1.789  16.798   3.233  -0.699  -0.404  "H2'"   8OG  32  
8OG  "H2''"  2H2*  H  0  0  N  N  N  7.416  -2.255  18.441   2.633   0.942  -0.792  "H2''"  8OG  33  
8OG  "H1'"   H1*   H  0  1  N  N  N  6.728  -0.223  19.355   1.172  -1.581  -0.887  "H1'"   8OG  34  
8OG  H7      H7    H  0  1  N  N  N  2.149  -0.134  18.957  -0.755   2.865  -2.858  H7      8OG  35  
8OG  H1      H1    H  0  1  N  N  N  2.123  -1.093  14.052  -1.264  -0.721  -6.255  H1      8OG  36  
8OG  H21     1H2   H  0  1  N  N  N  5.475  -1.299  13.114   0.084  -3.569  -4.725  H21     8OG  37  
8OG  H22     2H2   H  0  1  N  N  N  3.798  -1.392  12.628  -0.649  -2.976  -6.114  H22     8OG  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8OG  OP3    P       SING  N  N   1  
8OG  OP3    HOP3    SING  N  N   2  
8OG  P      OP1     DOUB  N  N   3  
8OG  P      OP2     SING  N  N   4  
8OG  P      "O5'"   SING  N  N   5  
8OG  OP2    HOP2    SING  N  N   6  
8OG  "O5'"  "C5'"   SING  N  N   7  
8OG  "C5'"  "C4'"   SING  N  N   8  
8OG  "C5'"  "H5'"   SING  N  N   9  
8OG  "C5'"  "H5''"  SING  N  N  10  
8OG  "C4'"  "O4'"   SING  N  N  11  
8OG  "C4'"  "C3'"   SING  N  N  12  
8OG  "C4'"  "H4'"   SING  N  N  13  
8OG  "O4'"  "C1'"   SING  N  N  14  
8OG  "C3'"  "O3'"   SING  N  N  15  
8OG  "C3'"  "C2'"   SING  N  N  16  
8OG  "C3'"  "H3'"   SING  N  N  17  
8OG  "O3'"  "HO3'"  SING  N  N  18  
8OG  "C2'"  "C1'"   SING  N  N  19  
8OG  "C2'"  "H2'"   SING  N  N  20  
8OG  "C2'"  "H2''"  SING  N  N  21  
8OG  "C1'"  N9      SING  N  N  22  
8OG  "C1'"  "H1'"   SING  N  N  23  
8OG  N9     C8      SING  N  N  24  
8OG  N9     C4      SING  N  N  25  
8OG  C8     N7      SING  N  N  26  
8OG  C8     O8      DOUB  N  N  27  
8OG  N7     C5      SING  N  N  28  
8OG  N7     H7      SING  N  N  29  
8OG  C5     C6      SING  N  N  30  
8OG  C5     C4      DOUB  N  N  31  
8OG  C6     O6      DOUB  N  N  32  
8OG  C6     N1      SING  N  N  33  
8OG  N1     C2      SING  N  N  34  
8OG  N1     H1      SING  N  N  35  
8OG  C2     N2      SING  N  N  36  
8OG  C2     N3      DOUB  N  N  37  
8OG  N2     H21     SING  N  N  38  
8OG  N2     H22     SING  N  N  39  
8OG  N3     C4      SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8OG  SMILES            ACDLabs               10.04  "O=C1C=2NC(=O)N(C=2N=C(N)N1)C3OC(C(O)C3)COP(=O)(O)O"  
8OG  SMILES_CANONICAL  CACTVS                3.341  "NC1=NC2=C(NC(=O)N2[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)C(=O)N1"  
8OG  SMILES            CACTVS                3.341  "NC1=NC2=C(NC(=O)N2[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)C(=O)N1"  
8OG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@@H]([C@H](O[C@H]1N2C3=C(C(=O)NC(=N3)N)NC2=O)COP(=O)(O)O)O"  
8OG  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C(C(OC1N2C3=C(C(=O)NC(=N3)N)NC2=O)COP(=O)(O)O)O"  
8OG  InChI             InChI                 1.03   "InChI=1S/C10H14N5O8P/c11-9-13-7-6(8(17)14-9)12-10(18)15(7)5-1-3(16)4(23-5)2-22-24(19,20)21/h3-5,16H,1-2H2,(H,12,18)(H2,19,20,21)(H3,11,13,14,17)/t3-,4+,5+/m0/s1"  
8OG  InChIKey          InChI                 1.03   AQIVLFLYHYFRKU-VPENINKCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8OG  "SYSTEMATIC NAME"  ACDLabs               10.04  "2'-deoxy-8-oxoguanosine 5'-(dihydrogen phosphate)"  
8OG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,5R)-5-(2-amino-6,8-dioxo-1,7-dihydropurin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8OG  "Create component"   2000-10-03  RCSB  
8OG  "Modify descriptor"  2011-06-04  RCSB  
8OG  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     8OG
_pdbx_chem_comp_synonyms.name        "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
